Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
06:53:34 (156210): wrapper (7.7.26015): starting
06:53:34 (156210): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 06:53:34] Arguments: --nthreads 12
[2025-10-12 06:53:34] Threads: 12
[2025-10-12 06:53:34] Checking for CVMFS
[2025-10-12 06:53:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:53:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:53:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:53:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:53:34] 2.12.7.0 2061225 1806 73376 151617 0 188 2289059 4194305 917 130560 0 5111813 99.997 65969 2288 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2025-10-12 06:53:34] CVMFS is ok
[2025-10-12 06:53:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:53:34] Checking for apptainer binary...
[2025-10-12 06:53:34] apptainer is not installed, using version from CVMFS
[2025-10-12 06:53:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:53:35] Trebeth
[2025-10-12 06:53:35] apptainer works
[2025-10-12 06:53:35] Set ATHENA_PROC_NUMBER=12
[2025-10-12 06:53:35] Set ATHENA_CORE_NUMBER=12
[2025-10-12 06:53:35] Starting ATLAS job with PandaID=6838366678
[2025-10-12 06:53:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:34:55]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:34:55]  workdir=None
[2025-10-12 07:34:55] ]
[2025-10-12 07:34:55] 2025-10-12 11:33:39,973 | INFO     | transferring file log.46676269._057545.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6838366678/log.46676269._057545.job.log.tgz.1 to /var/lib/boinc
[2025-10-12 07:34:55] 2025-10-12 11:33:39,973 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6838366678/log.46676269._057545.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.466762
[2025-10-12 07:34:55] 2025-10-12 11:33:39,990 | INFO     | adding to output.list: log.46676269._057545.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7a/63/log.46676269._057545.job.log.tg
[2025-10-12 07:34:55] 2025-10-12 11:33:39,991 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 07:34:55] 2025-10-12 11:33:39,991 | INFO     | summary of transferred files:
[2025-10-12 07:34:55] 2025-10-12 11:33:39,991 | INFO     |  -- lfn=log.46676269._057545.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 07:34:55] 2025-10-12 11:33:39,991 | INFO     | stage-out finished correctly
[2025-10-12 07:34:55] 2025-10-12 11:33:40,732 | INFO     | time since job start (2395s) is within the limit (172800.0s)
[2025-10-12 07:34:55] 2025-10-12 11:33:42,089 | INFO     | monitor loop #184: job 0:6838366678 is in state 'finished'
[2025-10-12 07:34:55] 2025-10-12 11:33:42,090 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:34:55] 2025-10-12 11:33:42,738 | INFO     | time since job start (2397s) is within the limit (172800.0s)
[2025-10-12 07:34:55] 2025-10-12 11:33:43,410 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 07:34:55] 2025-10-12 11:33:43,460 | INFO     | job 6838366678 has state=finished
[2025-10-12 07:34:55] 2025-10-12 11:33:43,460 | INFO     | preparing for final server update for job 6838366678 in state='finished'
[2025-10-12 07:34:55] 2025-10-12 11:33:43,461 | INFO     | this job has now completed (state=finished)
[2025-10-12 07:34:55] 2025-10-12 11:33:43,461 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 07:34:55] 2025-10-12 11:33:43,461 | INFO     | log transfer has been attempted: DONE
[2025-10-12 07:34:55] 2025-10-12 11:33:43,461 | INFO     | job 6838366678 has finished - writing final server update
[2025-10-12 07:34:55] 2025-10-12 11:33:43,461 | INFO     | total number of processed events: 400 (read)
[2025-10-12 07:34:55] 2025-10-12 11:33:43,464 | INFO     | executing command: lscpu
[2025-10-12 07:34:55] 2025-10-12 11:33:43,517 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 07:34:55] 2025-10-12 11:33:44,593 | INFO     | monitor loop #185: job 0:6838366678 is in state 'finished'
[2025-10-12 07:34:55] 2025-10-12 11:33:44,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:34:55] 2025-10-12 11:33:44,744 | INFO     | time since job start (2399s) is within the limit (172800.0s)
[2025-10-12 07:34:55] 2025-10-12 11:33:46,749 | INFO     | time since job start (2401s) is within the limit (172800.0s)
[2025-10-12 07:34:55] 2025-10-12 11:33:47,094 | INFO     | monitor loop #186: job 0:6838366678 is in state 'finished'
[2025-10-12 07:34:55] 2025-10-12 11:33:47,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:34:55] 2025-10-12 11:33:48,755 | INFO     | time since job start (2403s) is within the limit (172800.0s)
[2025-10-12 07:34:55] 2025-10-12 11:33:49,598 | INFO     | monitor loop #187: job 0:6838366678 is in state 'finished'
[2025-10-12 07:34:55] 2025-10-12 11:33:49,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:34:55] 2025-10-12 11:33:49,843 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 07:34:55] 2025-10-12 11:33:49,878 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 1685.710607142857
[2025-10-12 07:34:55] 2025-10-12 11:33:49,885 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6838366678/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:34:55] 2025-10-12 11:33:49,886 | INFO     | extracted standard info from prmon json
[2025-10-12 07:34:55] 2025-10-12 11:33:49,886 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 07:34:55] 2025-10-12 11:33:49,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:34:55] 2025-10-12 11:33:49,886 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:34:55] 2025-10-12 11:33:49,886 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:34:55] 2025-10-12 11:33:49,887 | INFO     | fitting pss+swap vs Time
[2025-10-12 07:34:55] 2025-10-12 11:33:49,888 | INFO     | sum of square deviations: 10150888.0
[2025-10-12 07:34:55] 2025-10-12 11:33:49,888 | INFO     | sum of deviations: -677903004.0
[2025-10-12 07:34:55] 2025-10-12 11:33:49,888 | INFO     | mean x: 1760267699.5
[2025-10-12 07:34:55] 2025-10-12 11:33:49,888 | INFO     | mean y: 2727557.1875
[2025-10-12 07:34:55] 2025-10-12 11:33:49,888 | INFO     | -- intersect: 117558035165.27254
[2025-10-12 07:34:55] 2025-10-12 11:33:49,888 | INFO     | intersect: 117558035165.27254
[2025-10-12 07:34:55] 2025-10-12 11:33:49,888 | INFO     | chi2: 0.040540636420383164
[2025-10-12 07:34:55] 2025-10-12 11:33:49,889 | INFO     | -- intersect: 117558035165.27254
[2025-10-12 07:34:55] 2025-10-12 11:33:49,889 | INFO     | current memory leak: -66.78 B/s (using 32 data points, chi2=0.04)
[2025-10-12 07:34:55] 2025-10-12 11:33:49,889 | INFO     | could have reported an average CPU frequency of 1698 MHz (5 samples)
[2025-10-12 07:34:55] 2025-10-12 11:33:49,889 | INFO     | ..............................
[2025-10-12 07:34:55] 2025-10-12 11:33:49,889 | INFO     | . Timing measurements:
[2025-10-12 07:34:55] 2025-10-12 11:33:49,889 | INFO     | . get job = 0 s
[2025-10-12 07:34:55] 2025-10-12 11:33:49,889 | INFO     | . initial setup = 2 s
[2025-10-12 07:34:55] 2025-10-12 11:33:49,890 | INFO     | . payload setup = 5 s
[2025-10-12 07:34:55] 2025-10-12 11:33:49,890 | INFO     | . stage-in = 0 s
[2025-10-12 07:34:55] 2025-10-12 11:33:49,890 | INFO     | . payload execution = 2369 s
[2025-10-12 07:34:55] 2025-10-12 11:33:49,890 | INFO     | . stage-out = 0 s
[2025-10-12 07:34:55] 2025-10-12 11:33:49,890 | INFO     | . log creation = 0 s
[2025-10-12 07:34:55] 2025-10-12 11:33:49,890 | INFO     | ..............................
[2025-10-12 07:34:55] 2025-10-12 11:33:50,016 | INFO     | PID=160218 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 07:34:55] 2025-10-12 11:33:50,016 | INFO     | .. there are 2 such processes running
[2025-10-12 07:34:55] 2025-10-12 11:33:50,166 | INFO     | 
[2025-10-12 07:34:55] 2025-10-12 11:33:50,166 | INFO     | job summary report
[2025-10-12 07:34:55] 2025-10-12 11:33:50,166 | INFO     | --------------------------------------------------
[2025-10-12 07:34:55] 2025-10-12 11:33:50,166 | INFO     | PanDA job id: 6838366678
[2025-10-12 07:34:55] 2025-10-12 11:33:50,166 | INFO     | task id: 46676269
[2025-10-12 07:34:55] 2025-10-12 11:33:50,166 | INFO     | errors: (none)
[2025-10-12 07:34:55] 2025-10-12 11:33:50,167 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:34:55] 2025-10-12 11:33:50,167 | INFO     | pilot state: finished 
[2025-10-12 07:34:55] 2025-10-12 11:33:50,167 | INFO     | transexitcode: 0
[2025-10-12 07:34:55] 2025-10-12 11:33:50,167 | INFO     | exeerrorcode: 0
[2025-10-12 07:34:55] 2025-10-12 11:33:50,167 | INFO     | exeerrordiag: 
[2025-10-12 07:34:55] 2025-10-12 11:33:50,167 | INFO     | exitcode: 0
[2025-10-12 07:34:55] 2025-10-12 11:33:50,167 | INFO     | exitmsg: OK
[2025-10-12 07:34:55] 2025-10-12 11:33:50,167 | INFO     | cpuconsumptiontime: 22970 s
[2025-10-12 07:34:55] 2025-10-12 11:33:50,167 | INFO     | nevents: 400
[2025-10-12 07:34:55] 2025-10-12 11:33:50,167 | INFO     | neventsw: 0
[2025-10-12 07:34:55] 2025-10-12 11:33:50,168 | INFO     | pid: 167148
[2025-10-12 07:34:55] 2025-10-12 11:33:50,168 | INFO     | pgrp: 167148
[2025-10-12 07:34:55] 2025-10-12 11:33:50,168 | INFO     | corecount: 12
[2025-10-12 07:34:55] 2025-10-12 11:33:50,168 | INFO     | event service: False
[2025-10-12 07:34:55] 2025-10-12 11:33:50,168 | INFO     | sizes: {0: 2348864, 4: 2349126, 11: 2349154, 2378: 2374309, 2380: 2383321, 2383: 2383377, 2390: 2383731}
[2025-10-12 07:34:55] 2025-10-12 11:33:50,168 | INFO     | --------------------------------------------------
[2025-10-12 07:34:55] 2025-10-12 11:33:50,168 | INFO     | 
[2025-10-12 07:34:55] 2025-10-12 11:33:50,168 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-10-12 07:34:55] 2025-10-12 11:33:50,192 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,192 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,192 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,192 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,192 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,192 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,192 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,193 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,193 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,193 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,193 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,193 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,193 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,193 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,193 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,193 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,194 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:34:55] 2025-10-12 11:33:50,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,194 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:34:55] 2025-10-12 11:33:50,194 | INFO     | job 6838366678 has completed (purged errors)
[2025-10-12 07:34:55] 2025-10-12 11:33:50,194 | INFO     | overall cleanup function is called
[2025-10-12 07:34:55] 2025-10-12 11:33:51,202 | INFO     | --- collectZombieJob: --- 10, [167148]
[2025-10-12 07:34:55] 2025-10-12 11:33:51,203 | INFO     | zombie collector waiting for pid 167148
[2025-10-12 07:34:55] 2025-10-12 11:33:51,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:34:55] 2025-10-12 11:33:51,203 | INFO     | collected zombie processes
[2025-10-12 07:34:55] 2025-10-12 11:33:51,203 | INFO     | will attempt to kill all subprocesses of pid=167148
[2025-10-12 07:34:55] 2025-10-12 11:33:51,349 | INFO     | process IDs to be killed: [167148] (in reverse order)
[2025-10-12 07:34:55] 2025-10-12 11:33:51,402 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:34:55] 2025-10-12 11:33:51,402 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:34:55] 2025-10-12 11:33:51,407 | INFO     | did not find any defunct processes belonging to 167148
[2025-10-12 07:34:55] 2025-10-12 11:33:51,411 | INFO     | did not find any defunct processes belonging to 167148
[2025-10-12 07:34:55] 2025-10-12 11:33:51,411 | INFO     | ready for new job
[2025-10-12 07:34:55] 2025-10-12 11:33:51,412 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:34:55] 2025-10-12 11:33:51,413 | INFO     | ***************************************
[2025-10-12 07:34:55] 2025-10-12 11:33:51,413 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:34:55] 2025-10-12 11:33:51,413 | INFO     | ***************************************
[2025-10-12 07:34:55] 2025-10-12 11:33:51,413 | INFO     | 
[2025-10-12 07:34:55] 2025-10-12 11:33:51,434 | INFO     | architecture information:
[2025-10-12 07:34:55] 2025-10-12 11:33:51,435 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:34:55] 2025-10-12 11:33:51,445 | INFO     | cat /etc/os-release:
[2025-10-12 07:34:55] NAME="CentOS Linux"
[2025-10-12 07:34:55] VERSION="7 (Core)"
[2025-10-12 07:34:55] ID="centos"
[2025-10-12 07:34:55] ID_LIKE="rhel fedora"
[2025-10-12 07:34:55] VERSION_ID="7"
[2025-10-12 07:34:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:34:55] ANSI_COLOR="0;31"
[2025-10-12 07:34:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:34:55] HOME_URL="https://www.centos.org/"
[2025-10-12 07:34:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:34:55] 
[2025-10-12 07:34:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:34:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:34:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:34:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:34:55] 
[2025-10-12 07:34:55] 2025-10-12 11:33:51,445 | INFO     | ***************************************
[2025-10-12 07:34:55] 2025-10-12 11:33:51,949 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-10-12 07:34:55] 2025-10-12 11:33:51,970 | INFO     | sufficient remaining disk space (403164889088 B)
[2025-10-12 07:34:55] 2025-10-12 11:33:51,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:34:55] 2025-10-12 11:33:51,971 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:34:55] 2025-10-12 11:33:51,971 | INFO     | update_server=False
[2025-10-12 07:34:55] 2025-10-12 11:33:51,971 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:34:55] 2025-10-12 11:33:52,101 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 07:34:55] 2025-10-12 11:33:52,101 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 07:34:55] 2025-10-12 11:33:52,102 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:34:55] 2025-10-12 11:33:52,102 | INFO     | will abort loop
[2025-10-12 07:34:55] 2025-10-12 11:33:52,437 | INFO     | all data control threads have been joined
[2025-10-12 07:34:55] 2025-10-12 11:33:52,664 | INFO     | all job control threads have been joined
[2025-10-12 07:34:55] 2025-10-12 11:33:52,977 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:52,990 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:53,053 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:53,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:34:55] 2025-10-12 11:33:53,106 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:53,423 | INFO     | all payload control threads have been joined
[2025-10-12 07:34:55] 2025-10-12 11:33:53,442 | INFO     | [data] control thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:53,670 | INFO     | [job] control thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:53,708 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:53,935 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:53,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:34:55] 2025-10-12 11:33:54,089 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:54,186 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:54,192 | INFO     | [job] validate thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:54,369 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:54,428 | INFO     | [payload] control thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:54,948 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:34:55] 2025-10-12 11:33:55,061 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:55,954 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:33:57,975 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:34:55] 2025-10-12 11:34:22,266 | INFO     | PID=160218 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 07:34:55] 2025-10-12 11:34:22,266 | INFO     | .. there are 2 such processes running
[2025-10-12 07:34:55] 2025-10-12 11:34:22,267 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:34:55] 2025-10-12 11:34:22,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:34:55] 2025-10-12 11:34:22,267 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:34:55] 2025-10-12 11:34:48,758 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:34:55] 2025-10-12 11:34:49,851 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139860153321280)>', '<ExcThread(monitor, started 139859863774976)>']
[2025-10-12 07:34:55] 2025-10-12 11:34:50,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:34:55] 2025-10-12 11:34:50,409 | INFO     | [monitor] control thread has ended
[2025-10-12 07:34:55] 2025-10-12 11:34:54,877 | INFO     | all workflow threads have been joined
[2025-10-12 07:34:55] 2025-10-12 11:34:54,877 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:34:55] 2025-10-12 11:34:54,878 | INFO     | traces error code: 0
[2025-10-12 07:34:55] 2025-10-12 11:34:54,878 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:34:55] 2025-10-12 11:34:54,959 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:34:55] 2025-10-12 11:34:54,963 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:34:55] 2025-10-12 11:34:54,965 [wrapper] pilotpid: 160218
[2025-10-12 07:34:55] 2025-10-12 11:34:54,968 [wrapper] Pilot exit status: 0
[2025-10-12 07:34:55] 2025-10-12 11:34:54,979 [wrapper] pandaids: 6838366678
[2025-10-12 07:34:55] 2025-10-12 11:34:55,014 [wrapper] cleanup supervisor_pilot  199739 160219
[2025-10-12 07:34:55] 2025-10-12 11:34:55,017 [wrapper] Test setup, not cleaning
[2025-10-12 07:34:55] 2025-10-12 11:34:55,020 [wrapper] apfmon messages muted
[2025-10-12 07:34:55] 2025-10-12 11:34:55,022 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:34:55] 2025-10-12 11:34:55,025 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:34:55]  *** Error codes and diagnostics ***
[2025-10-12 07:34:55]     "exeErrorCode": 0,
[2025-10-12 07:34:55]     "exeErrorDiag": "",
[2025-10-12 07:34:55]     "pilotErrorCode": 0,
[2025-10-12 07:34:55]     "pilotErrorDiag": "",
[2025-10-12 07:34:55]  *** Listing of results directory ***
[2025-10-12 07:34:55] total 403992
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc    557409 Oct 11 08:28 pilot3.tar.gz
[2025-10-12 07:34:55] -rwx------ 1 boinc boinc     36292 Oct 11 08:32 runpilot2-wrapper.sh
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc      5112 Oct 11 08:32 queuedata.json
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc       100 Oct 12 06:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:34:55] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 06:53 run_atlas
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc       105 Oct 12 06:53 job.xml
[2025-10-12 07:34:55] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:53 start_atlas.sh
[2025-10-12 07:34:55] drwxrwx--x 2 boinc boinc      4096 Oct 12 06:53 shared
[2025-10-12 07:34:55] -rw-r--r-- 2 boinc boinc    569678 Oct 12 06:53 input.tar.gz
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc      7601 Oct 12 06:53 init_data.xml
[2025-10-12 07:34:55] -rw-r--r-- 2 boinc boinc 221115135 Oct 12 06:53 EVNT.46676267._002310.pool.root.1
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:53 boinc_lockfile
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc      2550 Oct 12 06:53 pandaJob.out
[2025-10-12 07:34:55] -rw------- 1 boinc boinc    975520 Oct 12 06:53 agis_schedconf.cvmfs.json
[2025-10-12 07:34:55] -rw------- 1 boinc boinc   1560580 Oct 12 06:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:34:55] drwx------ 5 boinc boinc      4096 Oct 12 06:53 pilot3
[2025-10-12 07:34:55] -rw------- 1 boinc boinc 187185120 Oct 12 07:33 HITS.46676269._057545.pool.root.1
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc       529 Oct 12 07:33 boinc_task_state.xml
[2025-10-12 07:34:55] -rw------- 1 boinc boinc      1028 Oct 12 07:33 memory_monitor_summary.json
[2025-10-12 07:34:55] -rw------- 1 boinc boinc    354552 Oct 12 07:33 log.46676269._057545.job.log.tgz.1
[2025-10-12 07:34:55] -rw------- 1 boinc boinc      7780 Oct 12 07:33 heartbeat.json
[2025-10-12 07:34:55] -rw------- 1 boinc boinc        95 Oct 12 07:34 pilot_heartbeat.json
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc      8192 Oct 12 07:34 boinc_mmap_file
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc        27 Oct 12 07:34 wrapper_checkpoint.txt
[2025-10-12 07:34:55] -rw------- 1 boinc boinc      5016 Oct 12 07:34 pilotlog.txt
[2025-10-12 07:34:55] -rw------- 1 boinc boinc    387225 Oct 12 07:34 log.46676269._057545.job.log.1
[2025-10-12 07:34:55] -rw------- 1 boinc boinc       357 Oct 12 07:34 output.list
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc       620 Oct 12 07:34 runtime_log
[2025-10-12 07:34:55] -rw------- 1 boinc boinc    757760 Oct 12 07:34 result.tar.gz
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc      8772 Oct 12 07:34 runtime_log.err
[2025-10-12 07:34:55] -rw------- 1 boinc boinc       648 Oct 12 07:34 FcOKDm1wnR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmerRMDmSH5kNm.diag
[2025-10-12 07:34:55] -rw-r--r-- 1 boinc boinc     22050 Oct 12 07:34 stderr.txt
[2025-10-12 07:34:55] HITS file was successfully produced:
[2025-10-12 07:34:55] -rw------- 1 boinc boinc 187185120 Oct 12 07:33 shared/HITS.pool.root.1
[2025-10-12 07:34:55]  *** Contents of shared directory: ***
[2025-10-12 07:34:55] total 400060
[2025-10-12 07:34:55] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:53 start_atlas.sh
[2025-10-12 07:34:55] -rw-r--r-- 2 boinc boinc    569678 Oct 12 06:53 input.tar.gz
[2025-10-12 07:34:55] -rw-r--r-- 2 boinc boinc 221115135 Oct 12 06:53 ATLAS.root_0
[2025-10-12 07:34:55] -rw------- 1 boinc boinc 187185120 Oct 12 07:33 HITS.pool.root.1
[2025-10-12 07:34:55] -rw------- 1 boinc boinc    757760 Oct 12 07:34 result.tar.gz
07:34:56 (156210): run_atlas exited; CPU time 22999.311581
07:34:56 (156210): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN