Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 11:10:35 (44184): vboxwrapper version 26210
2025-10-12 11:10:35 (44184): BOINC client version: 8.2.5
2025-10-12 11:10:35 (44184): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-12 11:10:36 (44184): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 11:10:36 (44184): Create VM. (boinc_f6a5b1a693e6aef0, slot#22)
2025-10-12 11:10:36 (44184): Setting Memory Size for VM. (4096MB)
2025-10-12 11:10:37 (44184): Setting CPU Count for VM. (1)
2025-10-12 11:10:37 (44184): Setting Chipset Options for VM.
2025-10-12 11:10:37 (44184): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 11:10:37 (44184): Setting Boot Options for VM.
2025-10-12 11:10:38 (44184): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 11:10:38 (44184): Enabling VM Network Access.
2025-10-12 11:10:38 (44184): Disabling USB Support for VM.
2025-10-12 11:10:39 (44184): Disabling COM Port Support for VM.
2025-10-12 11:10:39 (44184): Disabling LPT Port Support for VM.
2025-10-12 11:10:39 (44184): Disabling Audio Support for VM.
2025-10-12 11:10:39 (44184): Disabling Clipboard Support for VM.
2025-10-12 11:10:40 (44184): Disabling Drag and Drop Support for VM.
2025-10-12 11:10:40 (44184): Adding storage controller(s) to VM.
2025-10-12 11:10:40 (44184): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 11:10:41 (44184): Adding VirtualBox Guest Additions to VM.
2025-10-12 11:10:41 (44184): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 11:10:41 (44184): forwarding host port 49268 to guest port 80
2025-10-12 11:10:41 (44184): Enabling remote desktop for VM.
2025-10-12 11:10:42 (44184): Enabling shared directory for VM.
2025-10-12 11:10:43 (44184): Starting VM using VBoxManage interface. (boinc_f6a5b1a693e6aef0, slot#22)
2025-10-12 11:10:47 (44184): Successfully started VM. (PID = '37132')
2025-10-12 11:10:47 (44184): Reporting VM Process ID to BOINC.
2025-10-12 11:10:47 (44184): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-12 11:10:47 (44184): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 11:10:47 (44184): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 11:10:47 (44184): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 11:10:47 (44184): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 11:10:47 (44184): Detected: Web Application Enabled (http://localhost:49268)
2025-10-12 11:10:47 (44184): Detected: Remote Desktop Enabled (localhost:57178)
2025-10-12 11:10:47 (44184): Preference change detected
2025-10-12 11:10:47 (44184): Setting CPU throttle for VM. (100%)
2025-10-12 11:10:47 (44184): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 11:10:49 (44184): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 11:10:49 (44184): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 11:10:51 (44184): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 11:10:51 (44184): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 11:10:51 (44184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 11:10:54 (44184): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 11:10:54 (44184): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 11:10:59 (44184): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 11:10:59 (44184): Guest Log: 00:00:00.000136 main     Log opened 2025-10-12T11:10:57.465287000Z
2025-10-12 11:10:59 (44184): Guest Log: 00:00:00.000278 main     OS Product: Linux
2025-10-12 11:10:59 (44184): Guest Log: 00:00:00.000292 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 11:10:59 (44184): Guest Log: 00:00:00.000303 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 11:10:59 (44184): Guest Log: 00:00:00.000314 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 11:10:59 (44184): Guest Log: 00:00:00.000315 main     Process ID: 1243
2025-10-12 11:10:59 (44184): Guest Log: 00:00:00.000315 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 11:10:59 (44184): Guest Log: 00:00:00.001302 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 11:10:59 (44184): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 11:10:59 (44184): Guest Log: [INFO] Mounting shared directory
2025-10-12 11:10:59 (44184): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 11:11:01 (44184): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 11:11:01 (44184): Guest Log: [INFO] Detected branch: prod
2025-10-12 11:11:01 (44184): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 11:11:01 (44184): Guest Log: Copying input files
2025-10-12 11:11:02 (44184): Guest Log: Copied input files into RunAtlas.
2025-10-12 11:11:02 (44184): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-10-12 11:11:08 (44184): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 11:11:09 (44184): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 11:11:09 (44184): Guest Log: 2.6.3.0 1513 0 31740 151614 4 1 3120538 4096000 0 65024 0 0 n/a 1291 20822 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-10-12 11:11:09 (44184): Guest Log: copied the webapp to /var/www
2025-10-12 11:11:09 (44184): Guest Log: core_number=1
2025-10-12 11:11:09 (44184): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 11:11:09 (44184): Guest Log: 00:00:10.020465 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 720 267 000ns (GuestNow=1 760 260 268 764 663 000 ns GuestLast=1 760 267 457 484 930 000 ns fSetTimeLastLoop=true )
2025-10-12 11:11:09 (44184): Guest Log:  *** Starting ATLAS job. (PandaID=6838453201 taskID=46676269) ***
2025-10-12 12:50:50 (44184): Status Report: Elapsed Time: '6000.000000'
2025-10-12 12:50:50 (44184): Status Report: CPU Time: '5934.312500'
2025-10-12 13:44:30 (44184): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 13:59:16 (44184): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 14:45:39 (44184): Status Report: Elapsed Time: '12000.000000'
2025-10-12 14:45:39 (44184): Status Report: CPU Time: '11912.015625'
2025-10-12 16:25:42 (44184): Status Report: Elapsed Time: '18000.000000'
2025-10-12 16:25:42 (44184): Status Report: CPU Time: '17885.453125'
2025-10-12 18:05:44 (44184): Status Report: Elapsed Time: '24000.000000'
2025-10-12 18:05:44 (44184): Status Report: CPU Time: '23853.718750'
2025-10-12 18:10:38 (44184): Guest Log:  *** Job finished ***
2025-10-12 18:10:38 (44184): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:23,980 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:23,980 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:49,916 | INFO     | [monitor] cgroup control has ended
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:50,294 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140242019657536)>', '<ExcThread(monitor, started 140241704818432)>']
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:51,012 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:51,013 | INFO     | [monitor] control thread has ended
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,300 | INFO     | all workflow threads have been joined
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,300 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,300 | INFO     | traces error code: 0
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,301 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,411 [wrapper] ==== pilot stdout END ====
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,413 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,415 [wrapper] pilotpid: 5852
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,416 [wrapper] Pilot exit status: 0
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,460 [wrapper] pandaids: 6838453201
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,473 [wrapper] cleanup supervisor_pilot 29232 5853
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,476 [wrapper] Test setup, not cleaning
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,479 [wrapper] apfmon messages muted
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,481 [wrapper] ==== wrapper stdout END ====
2025-10-12 18:10:38 (44184): Guest Log: 2025-10-12 15:55:55,483 [wrapper] ==== wrapper stderr END ====
2025-10-12 18:10:38 (44184): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 18:10:38 (44184): Guest Log:     "exeErrorCode": 0,
2025-10-12 18:10:38 (44184): Guest Log:     "exeErrorDiag": "",
2025-10-12 18:10:38 (44184): Guest Log:     "pilotErrorCode": 0,
2025-10-12 18:10:38 (44184): Guest Log:     "pilotErrorDiag": "",
2025-10-12 18:10:38 (44184): Guest Log:  *** Listing of results directory ***
2025-10-12 18:10:38 (44184): Guest Log: total 208936
2025-10-12 18:10:38 (44184): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 14:01 pilot3.tar.gz
2025-10-12 18:10:38 (44184): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 14:05 queuedata.json
2025-10-12 18:10:38 (44184): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 14:06 runpilot2-wrapper.sh
2025-10-12 18:10:38 (44184): Guest Log: -rwxr-xr-x. 1 atlas atlas      9354 Oct 12 09:11 init_data.xml
2025-10-12 18:10:38 (44184): Guest Log: -rwxr-xr-x. 1 atlas atlas    569679 Oct 12 09:11 input.tar.gz
2025-10-12 18:10:38 (44184): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 09:11 start_atlas.sh
2025-10-12 18:10:38 (44184): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 09:11 EVNT.46676267._002372.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 18:10:38 (44184): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 09:11 pandaJob.out
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas    975520 Oct 12 09:11 agis_schedconf.cvmfs.json
2025-10-12 18:10:38 (44184): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 09:11 pilot3
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas 202333932 Oct 12 15:54 HITS.46676269._059061.pool.root.1
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas      1024 Oct 12 15:54 memory_monitor_summary.json
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 15:54 agis_ddmendpoints.agis.ALL.json
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas    507186 Oct 12 15:54 log.46676269._059061.job.log.tgz.1
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas      7811 Oct 12 15:54 heartbeat.json
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 15:55 pilot_heartbeat.json
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas      5063 Oct 12 15:55 pilotlog.txt
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas   3384731 Oct 12 15:55 log.46676269._059061.job.log.1
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 15:55 output.list
2025-10-12 18:10:38 (44184): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 15:55 runtime_log
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas   3911680 Oct 12 15:55 result.tar.gz
2025-10-12 18:10:38 (44184): Guest Log: -rw-r--r--. 1 atlas atlas      8519 Oct 12 15:55 runtime_log.err
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas       657 Oct 12 15:55 92OLDm2PpR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm41RMDmnM3R3n.diag
2025-10-12 18:10:38 (44184): Guest Log: Looking for outputfile HITS.46676269._059061.pool.root.1
2025-10-12 18:10:38 (44184): Guest Log: HITS file was successfully produced
2025-10-12 18:10:38 (44184): Guest Log: -rw-------. 1 atlas atlas 202333932 Oct 12 15:54 /home/atlas/RunAtlas/HITS.46676269._059061.pool.root.1
2025-10-12 18:10:39 (44184): Guest Log: Successfully finished the ATLAS job!
2025-10-12 18:10:39 (44184): Guest Log: Copying the results back to the shared directory!
2025-10-12 18:10:39 (44184): Guest Log:  *** Contents of shared directory: ***
2025-10-12 18:10:39 (44184): Guest Log: total 420804
2025-10-12 18:10:39 (44184): Guest Log: -rwxrwxrwx. 1 root root 224052715 Oct 12 09:10 ATLAS.root_0
2025-10-12 18:10:39 (44184): Guest Log: -rwxrwxrwx. 1 root root 202333932 Oct 12  2025 HITS.pool.root.1
2025-10-12 18:10:39 (44184): Guest Log: -rwxrwxrwx. 1 root root      9354 Oct 12 09:10 init_data.xml
2025-10-12 18:10:39 (44184): Guest Log: -rwxrwxrwx. 1 root root    569679 Oct 11 21:29 input.tar.gz
2025-10-12 18:10:39 (44184): Guest Log: -rwxrwxrwx. 1 root root   3911680 Oct 12  2025 result.tar.gz
2025-10-12 18:10:39 (44184): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 21:29 start_atlas.sh
2025-10-12 18:10:39 (44184): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 18:10:39 (44184): VM Completion File Detected.
2025-10-12 18:10:39 (44184): Powering off VM.
2025-10-12 18:10:39 (44184): Successfully stopped VM.
2025-10-12 18:10:39 (44184): Deregistering VM. (boinc_f6a5b1a693e6aef0, slot#22)
2025-10-12 18:10:39 (44184): Removing network bandwidth throttle group from VM.
2025-10-12 18:10:40 (44184): Removing VM from VirtualBox.
2025-10-12 18:10:45 (44184): called boinc_finish(0)

</stderr_txt>
]]>

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