Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 11:23:30 (49420): vboxwrapper version 26210
2025-10-12 11:23:30 (49420): BOINC client version: 8.2.5
2025-10-12 11:23:30 (49420): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-12 11:23:31 (49420): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 11:23:31 (49420): Create VM. (boinc_910b394d1009d229, slot#3)
2025-10-12 11:23:31 (49420): Setting Memory Size for VM. (4096MB)
2025-10-12 11:23:32 (49420): Setting CPU Count for VM. (1)
2025-10-12 11:23:32 (49420): Setting Chipset Options for VM.
2025-10-12 11:23:32 (49420): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 11:23:32 (49420): Setting Boot Options for VM.
2025-10-12 11:23:33 (49420): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 11:23:33 (49420): Enabling VM Network Access.
2025-10-12 11:23:33 (49420): Disabling USB Support for VM.
2025-10-12 11:23:34 (49420): Disabling COM Port Support for VM.
2025-10-12 11:23:34 (49420): Disabling LPT Port Support for VM.
2025-10-12 11:23:34 (49420): Disabling Audio Support for VM.
2025-10-12 11:23:34 (49420): Disabling Clipboard Support for VM.
2025-10-12 11:23:35 (49420): Disabling Drag and Drop Support for VM.
2025-10-12 11:23:35 (49420): Adding storage controller(s) to VM.
2025-10-12 11:23:35 (49420): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 11:23:36 (49420): Adding VirtualBox Guest Additions to VM.
2025-10-12 11:23:36 (49420): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 11:23:36 (49420): forwarding host port 56361 to guest port 80
2025-10-12 11:23:36 (49420): Enabling remote desktop for VM.
2025-10-12 11:23:37 (49420): Enabling shared directory for VM.
2025-10-12 11:23:38 (49420): Starting VM using VBoxManage interface. (boinc_910b394d1009d229, slot#3)
2025-10-12 11:23:42 (49420): Successfully started VM. (PID = '36860')
2025-10-12 11:23:42 (49420): Reporting VM Process ID to BOINC.
2025-10-12 11:23:42 (49420): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-12 11:23:42 (49420): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 11:23:42 (49420): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 11:23:42 (49420): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 11:23:42 (49420): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 11:23:42 (49420): Detected: Web Application Enabled (http://localhost:56361)
2025-10-12 11:23:42 (49420): Detected: Remote Desktop Enabled (localhost:56362)
2025-10-12 11:23:42 (49420): Preference change detected
2025-10-12 11:23:42 (49420): Setting CPU throttle for VM. (100%)
2025-10-12 11:23:42 (49420): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 11:23:44 (49420): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 11:23:44 (49420): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 11:23:46 (49420): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 11:23:46 (49420): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 11:23:46 (49420): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 11:23:49 (49420): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 11:23:49 (49420): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 11:23:54 (49420): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 11:23:54 (49420): Guest Log: 00:00:00.000104 main     Log opened 2025-10-12T11:23:52.379026000Z
2025-10-12 11:23:54 (49420): Guest Log: 00:00:00.000209 main     OS Product: Linux
2025-10-12 11:23:54 (49420): Guest Log: 00:00:00.000223 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 11:23:54 (49420): Guest Log: 00:00:00.000235 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 11:23:54 (49420): Guest Log: 00:00:00.000246 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 11:23:54 (49420): Guest Log: 00:00:00.000246 main     Process ID: 1241
2025-10-12 11:23:54 (49420): Guest Log: 00:00:00.000246 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 11:23:54 (49420): Guest Log: 00:00:00.000946 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 11:23:54 (49420): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 11:23:54 (49420): Guest Log: [INFO] Mounting shared directory
2025-10-12 11:23:54 (49420): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 11:23:56 (49420): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 11:23:56 (49420): Guest Log: [INFO] Detected branch: prod
2025-10-12 11:23:56 (49420): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 11:23:56 (49420): Guest Log: Copying input files
2025-10-12 11:23:56 (49420): Guest Log: Copied input files into RunAtlas.
2025-10-12 11:23:56 (49420): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-10-12 11:24:03 (49420): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 11:24:03 (49420): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 11:24:03 (49420): Guest Log: 2.6.3.0 1511 0 31532 151615 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-10-12 11:24:03 (49420): Guest Log: copied the webapp to /var/www
2025-10-12 11:24:03 (49420): Guest Log: core_number=1
2025-10-12 11:24:03 (49420): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 11:24:04 (49420): Guest Log:  *** Starting ATLAS job. (PandaID=6838451410 taskID=46676269) ***
2025-10-12 11:24:04 (49420): Guest Log: 00:00:10.016475 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 652 155 000ns (GuestNow=1 760 261 043 738 595 000 ns GuestLast=1 760 268 232 390 750 000 ns fSetTimeLastLoop=true )
2025-10-12 12:53:16 (49420): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 12:59:57 (49420): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 13:10:27 (49420): Status Report: Elapsed Time: '6000.000000'
2025-10-12 13:10:27 (49420): Status Report: CPU Time: '5914.218750'
2025-10-12 14:01:57 (49420): VM state change detected. (old = 'running', new = 'paused')
2025-10-12 14:06:25 (49420): VM state change detected. (old = 'paused', new = 'running')
2025-10-12 14:54:59 (49420): Status Report: Elapsed Time: '12000.000000'
2025-10-12 14:54:59 (49420): Status Report: CPU Time: '11898.906250'
2025-10-12 16:35:02 (49420): Status Report: Elapsed Time: '18000.000000'
2025-10-12 16:35:02 (49420): Status Report: CPU Time: '17873.031250'
2025-10-12 17:46:51 (49420): Guest Log:  *** Job finished ***
2025-10-12 17:46:51 (49420): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:23,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:23,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:41,563 | INFO     | [monitor] cgroup control has ended
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:42,088 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140285675255616)>', '<ExcThread(monitor, started 140285090715392)>']
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:42,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:42,287 | INFO     | [monitor] control thread has ended
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,094 | INFO     | all workflow threads have been joined
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,094 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,094 | INFO     | traces error code: 0
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,215 [wrapper] ==== pilot stdout END ====
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,217 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,218 [wrapper] pilotpid: 5845
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,220 [wrapper] Pilot exit status: 0
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,267 [wrapper] pandaids: 6838451410
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,277 [wrapper] cleanup supervisor_pilot 26334 5846
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,278 [wrapper] Test setup, not cleaning
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,279 [wrapper] apfmon messages muted
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,281 [wrapper] ==== wrapper stdout END ====
2025-10-12 17:46:51 (49420): Guest Log: 2025-10-12 15:35:47,282 [wrapper] ==== wrapper stderr END ====
2025-10-12 17:46:51 (49420): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 17:46:51 (49420): Guest Log:     "exeErrorCode": 0,
2025-10-12 17:46:51 (49420): Guest Log:     "exeErrorDiag": "",
2025-10-12 17:46:51 (49420): Guest Log:     "pilotErrorCode": 0,
2025-10-12 17:46:51 (49420): Guest Log:     "pilotErrorDiag": "",
2025-10-12 17:46:51 (49420): Guest Log:  *** Listing of results directory ***
2025-10-12 17:46:51 (49420): Guest Log: total 200060
2025-10-12 17:46:51 (49420): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 12:51 pilot3.tar.gz
2025-10-12 17:46:51 (49420): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 12:54 runpilot2-wrapper.sh
2025-10-12 17:46:51 (49420): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 12:54 queuedata.json
2025-10-12 17:46:51 (49420): Guest Log: -rwxr-xr-x. 1 atlas atlas      9353 Oct 12 09:23 init_data.xml
2025-10-12 17:46:51 (49420): Guest Log: -rwxr-xr-x. 1 atlas atlas    569678 Oct 12 09:23 input.tar.gz
2025-10-12 17:46:51 (49420): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 09:23 start_atlas.sh
2025-10-12 17:46:51 (49420): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 09:23 EVNT.46676267._002329.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 17:46:51 (49420): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 12 09:24 pandaJob.out
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas    975536 Oct 12 09:24 agis_schedconf.cvmfs.json
2025-10-12 17:46:51 (49420): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 09:24 pilot3
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas 193871331 Oct 12 15:34 HITS.46676269._058090.pool.root.1
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas      1025 Oct 12 15:34 memory_monitor_summary.json
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 15:34 agis_ddmendpoints.agis.ALL.json
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas    490038 Oct 12 15:34 log.46676269._058090.job.log.tgz.1
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas      7807 Oct 12 15:34 heartbeat.json
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 15:35 pilot_heartbeat.json
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 12 15:35 pilotlog.txt
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas   3089256 Oct 12 15:35 log.46676269._058090.job.log.1
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 15:35 output.list
2025-10-12 17:46:51 (49420): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 15:35 runtime_log
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas   3594240 Oct 12 15:35 result.tar.gz
2025-10-12 17:46:51 (49420): Guest Log: -rw-r--r--. 1 atlas atlas      8519 Oct 12 15:35 runtime_log.err
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas       656 Oct 12 15:35 FwuLDm4HoR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuUgNDmDchCDo.diag
2025-10-12 17:46:51 (49420): Guest Log: Looking for outputfile HITS.46676269._058090.pool.root.1
2025-10-12 17:46:51 (49420): Guest Log: HITS file was successfully produced
2025-10-12 17:46:51 (49420): Guest Log: -rw-------. 1 atlas atlas 193871331 Oct 12 15:34 /home/atlas/RunAtlas/HITS.46676269._058090.pool.root.1
2025-10-12 17:46:51 (49420): Guest Log: Successfully finished the ATLAS job!
2025-10-12 17:46:51 (49420): Guest Log: Copying the results back to the shared directory!
2025-10-12 17:46:51 (49420): Guest Log:  *** Contents of shared directory: ***
2025-10-12 17:46:51 (49420): Guest Log: total 409584
2025-10-12 17:46:51 (49420): Guest Log: -rwxrwxrwx. 1 root root 221342877 Oct 12 09:23 ATLAS.root_0
2025-10-12 17:46:51 (49420): Guest Log: -rwxrwxrwx. 1 root root 193871331 Oct 12  2025 HITS.pool.root.1
2025-10-12 17:46:51 (49420): Guest Log: -rwxrwxrwx. 1 root root      9353 Oct 12 09:23 init_data.xml
2025-10-12 17:46:51 (49420): Guest Log: -rwxrwxrwx. 1 root root    569678 Oct 11 21:29 input.tar.gz
2025-10-12 17:46:51 (49420): Guest Log: -rwxrwxrwx. 1 root root   3594240 Oct 12  2025 result.tar.gz
2025-10-12 17:46:51 (49420): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 21:29 start_atlas.sh
2025-10-12 17:46:52 (49420): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 17:46:52 (49420): VM Completion File Detected.
2025-10-12 17:46:52 (49420): Powering off VM.
2025-10-12 17:46:52 (49420): Successfully stopped VM.
2025-10-12 17:46:52 (49420): Deregistering VM. (boinc_910b394d1009d229, slot#3)
2025-10-12 17:46:52 (49420): Removing network bandwidth throttle group from VM.
2025-10-12 17:46:53 (49420): Removing VM from VirtualBox.
2025-10-12 17:46:58 (49420): called boinc_finish(0)

</stderr_txt>
]]>

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