Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:31:22 (3474386): wrapper (7.7.26015): starting
09:31:22 (3474386): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 09:31:22] Arguments: --nthreads 4
[2025-10-12 09:31:22] Threads: 4
[2025-10-12 09:31:22] Checking for CVMFS
[2025-10-12 09:31:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 09:31:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 09:31:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 09:31:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 09:31:23] 2.9.2.0 2032506 4010 104516 151612 0 57 26258285 36864000 0 130560 0 3602009 99.992 132316 863 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 09:31:23] CVMFS is ok
[2025-10-12 09:31:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:31:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:31:23] Further information can be found at the LHC@home message board.
[2025-10-12 09:31:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:31:23] Checking for apptainer binary...
[2025-10-12 09:31:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 09:31:23] Running /usr/bin/apptainer --version
[2025-10-12 09:31:23] apptainer version 1.4.1-1.1
[2025-10-12 09:31:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:31:23] madmaxA277
[2025-10-12 09:31:23] apptainer works
[2025-10-12 09:31:23] Set ATHENA_PROC_NUMBER=4
[2025-10-12 09:31:23] Set ATHENA_CORE_NUMBER=4
[2025-10-12 09:31:23] Starting ATLAS job with PandaID=6838451429
[2025-10-12 09:31:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:40:42]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:40:42] 2025-10-12 08:39:58,239 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:40:42] 2025-10-12 08:39:58,239 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:40:42] 2025-10-12 08:39:58,239 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:40:42] 2025-10-12 08:39:58,239 | INFO     | job 6838451429 has completed (purged errors)
[2025-10-12 10:40:42] 2025-10-12 08:39:58,239 | INFO     | overall cleanup function is called
[2025-10-12 10:40:42] 2025-10-12 08:39:59,245 | INFO     | --- collectZombieJob: --- 10, [3484746]
[2025-10-12 10:40:42] 2025-10-12 08:39:59,246 | INFO     | zombie collector waiting for pid 3484746
[2025-10-12 10:40:42] 2025-10-12 08:39:59,246 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:40:42] 2025-10-12 08:39:59,246 | INFO     | collected zombie processes
[2025-10-12 10:40:42] 2025-10-12 08:39:59,246 | INFO     | will attempt to kill all subprocesses of pid=3484746
[2025-10-12 10:40:42] 2025-10-12 08:39:59,292 | INFO     | process IDs to be killed: [3484746] (in reverse order)
[2025-10-12 10:40:42] 2025-10-12 08:39:59,325 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:40:42] 2025-10-12 08:39:59,325 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:40:42] 2025-10-12 08:39:59,327 | INFO     | did not find any defunct processes belonging to 3484746
[2025-10-12 10:40:42] 2025-10-12 08:39:59,329 | INFO     | did not find any defunct processes belonging to 3484746
[2025-10-12 10:40:42] 2025-10-12 08:39:59,329 | INFO     | ready for new job
[2025-10-12 10:40:42] 2025-10-12 08:39:59,329 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:40:42] 2025-10-12 08:39:59,330 | INFO     | ***************************************
[2025-10-12 10:40:42] 2025-10-12 08:39:59,330 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:40:42] 2025-10-12 08:39:59,330 | INFO     | ***************************************
[2025-10-12 10:40:42] 2025-10-12 08:39:59,330 | INFO     | 
[2025-10-12 10:40:42] 2025-10-12 08:39:59,330 | INFO     | architecture information:
[2025-10-12 10:40:42] 2025-10-12 08:39:59,330 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:40:42] 2025-10-12 08:39:59,343 | INFO     | cat /etc/os-release:
[2025-10-12 10:40:42] NAME="CentOS Linux"
[2025-10-12 10:40:42] VERSION="7 (Core)"
[2025-10-12 10:40:42] ID="centos"
[2025-10-12 10:40:42] ID_LIKE="rhel fedora"
[2025-10-12 10:40:42] VERSION_ID="7"
[2025-10-12 10:40:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:40:42] ANSI_COLOR="0;31"
[2025-10-12 10:40:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:40:42] HOME_URL="https://www.centos.org/"
[2025-10-12 10:40:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:40:42] 
[2025-10-12 10:40:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:40:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:40:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:40:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:40:42] 
[2025-10-12 10:40:42] 2025-10-12 08:39:59,344 | INFO     | ***************************************
[2025-10-12 10:40:42] 2025-10-12 08:39:59,847 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 10:40:42] 2025-10-12 08:39:59,864 | INFO     | sufficient remaining disk space (333428293632 B)
[2025-10-12 10:40:42] 2025-10-12 08:39:59,864 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:40:42] 2025-10-12 08:39:59,864 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:40:42] 2025-10-12 08:39:59,864 | INFO     | update_server=False
[2025-10-12 10:40:42] 2025-10-12 08:39:59,864 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:40:42] 2025-10-12 08:39:59,864 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:40:42] 2025-10-12 08:39:59,882 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:40:42] 2025-10-12 08:39:59,934 | INFO     | all payload control threads have been joined
[2025-10-12 10:40:42] 2025-10-12 08:40:00,272 | INFO     | all data control threads have been joined
[2025-10-12 10:40:42] 2025-10-12 08:40:00,341 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 10:40:42] 2025-10-12 08:40:00,341 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 10:40:42] 2025-10-12 08:40:00,341 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:40:42] 2025-10-12 08:40:00,342 | INFO     | will abort loop
[2025-10-12 10:40:42] 2025-10-12 08:40:00,870 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:00,870 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:00,939 | INFO     | [payload] control thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:00,947 | INFO     | all job control threads have been joined
[2025-10-12 10:40:42] 2025-10-12 08:40:00,954 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:01,024 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:40:42] 2025-10-12 08:40:01,278 | INFO     | [data] control thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:01,347 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:01,395 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:01,469 | INFO     | [job] validate thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:01,665 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:01,718 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:01,727 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:01,888 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:01,951 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:01,953 | INFO     | [job] control thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:05,031 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:10,464 | INFO     | job.realtimelogging is not enabled
[2025-10-12 10:40:42] 2025-10-12 08:40:11,470 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:40:42] 2025-10-12 08:40:30,330 | INFO     | PID=3478173 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 10:40:42] 2025-10-12 08:40:30,330 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:40:42] 2025-10-12 08:40:30,330 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:40:42] 2025-10-12 08:40:30,330 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:40:42] 2025-10-12 08:40:35,352 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:40:42] 2025-10-12 08:40:36,839 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139816747333440)>', '<ExcThread(monitor, started 139815722927872)>']
[2025-10-12 10:40:42] 2025-10-12 08:40:37,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:40:42] 2025-10-12 08:40:37,367 | INFO     | [monitor] control thread has ended
[2025-10-12 10:40:42] 2025-10-12 08:40:41,865 | INFO     | all workflow threads have been joined
[2025-10-12 10:40:42] 2025-10-12 08:40:41,865 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:40:42] 2025-10-12 08:40:41,865 | INFO     | traces error code: 0
[2025-10-12 10:40:42] 2025-10-12 08:40:41,865 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:40:42] 2025-10-12 08:40:41,946 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:40:42] 2025-10-12 08:40:41,950 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:40:42] 2025-10-12 08:40:41,954 [wrapper] pilotpid: 3478173
[2025-10-12 10:40:42] 2025-10-12 08:40:41,958 [wrapper] Pilot exit status: 0
[2025-10-12 10:40:42] 2025-10-12 08:40:41,969 [wrapper] pandaids: 6838451429
[2025-10-12 10:40:42] 2025-10-12 08:40:41,990 [wrapper] cleanup supervisor_pilot 3496626 3478174
[2025-10-12 10:40:42] 2025-10-12 08:40:41,993 [wrapper] Test setup, not cleaning
[2025-10-12 10:40:42] 2025-10-12 08:40:41,997 [wrapper] apfmon messages muted
[2025-10-12 10:40:42] 2025-10-12 08:40:42,001 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:40:42] 2025-10-12 08:40:42,004 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:40:42]  *** Error codes and diagnostics ***
[2025-10-12 10:40:42]     "exeErrorCode": 0,
[2025-10-12 10:40:42]     "exeErrorDiag": "",
[2025-10-12 10:40:42]     "pilotErrorCode": 0,
[2025-10-12 10:40:42]     "pilotErrorDiag": "",
[2025-10-12 10:40:42]  *** Listing of results directory ***
[2025-10-12 10:40:42] total 407504
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc    557409 Oct 11 14:51 pilot3.tar.gz
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc      5112 Oct 11 14:55 queuedata.json
[2025-10-12 10:40:42] -rwx------ 1 boinc boinc     36292 Oct 11 14:56 runpilot2-wrapper.sh
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc       100 Oct 12 09:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:40:42] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 09:31 run_atlas
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc       105 Oct 12 09:31 job.xml
[2025-10-12 10:40:42] -rw-r--r-- 2 boinc boinc 220733680 Oct 12 09:31 EVNT.46676267._002330.pool.root.1
[2025-10-12 10:40:42] -rw-r--r-- 2 boinc boinc    569682 Oct 12 09:31 input.tar.gz
[2025-10-12 10:40:42] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:31 start_atlas.sh
[2025-10-12 10:40:42] drwxrwx--x 2 boinc boinc      4096 Oct 12 09:31 shared
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:31 boinc_setup_complete
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc      6373 Oct 12 09:31 init_data.xml
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:31 boinc_lockfile
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc      2550 Oct 12 09:31 pandaJob.out
[2025-10-12 10:40:42] -rw------- 1 boinc boinc    975520 Oct 12 09:31 agis_schedconf.cvmfs.json
[2025-10-12 10:40:42] -rw------- 1 boinc boinc   1560580 Oct 12 09:31 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:40:42] drwx------ 5 boinc boinc      4096 Oct 12 09:31 pilot3
[2025-10-12 10:40:42] -rw------- 1 boinc boinc 190896125 Oct 12 10:39 HITS.46676269._058109.pool.root.1
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc       529 Oct 12 10:39 boinc_task_state.xml
[2025-10-12 10:40:42] -rw------- 1 boinc boinc      1024 Oct 12 10:39 memory_monitor_summary.json
[2025-10-12 10:40:42] -rw------- 1 boinc boinc        95 Oct 12 10:39 pilot_heartbeat.json
[2025-10-12 10:40:42] -rw------- 1 boinc boinc    264917 Oct 12 10:39 log.46676269._058109.job.log.tgz.1
[2025-10-12 10:40:42] -rw------- 1 boinc boinc      7777 Oct 12 10:39 heartbeat.json
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc      8192 Oct 12 10:40 boinc_mmap_file
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc        27 Oct 12 10:40 wrapper_checkpoint.txt
[2025-10-12 10:40:42] -rw------- 1 boinc boinc      5010 Oct 12 10:40 pilotlog.txt
[2025-10-12 10:40:42] -rw------- 1 boinc boinc    613879 Oct 12 10:40 log.46676269._058109.job.log.1
[2025-10-12 10:40:42] -rw------- 1 boinc boinc       357 Oct 12 10:40 output.list
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc       620 Oct 12 10:40 runtime_log
[2025-10-12 10:40:42] -rw------- 1 boinc boinc    901120 Oct 12 10:40 result.tar.gz
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc      8797 Oct 12 10:40 runtime_log.err
[2025-10-12 10:40:42] -rw------- 1 boinc boinc       662 Oct 12 10:40 pbBODmuJoR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5uRMDmYAZDWn.diag
[2025-10-12 10:40:42] -rw-r--r-- 1 boinc boinc     11439 Oct 12 10:40 stderr.txt
[2025-10-12 10:40:42] HITS file was successfully produced:
[2025-10-12 10:40:42] -rw------- 1 boinc boinc 190896125 Oct 12 10:39 shared/HITS.pool.root.1
[2025-10-12 10:40:42]  *** Contents of shared directory: ***
[2025-10-12 10:40:42] total 403452
[2025-10-12 10:40:42] -rw-r--r-- 2 boinc boinc 220733680 Oct 12 09:31 ATLAS.root_0
[2025-10-12 10:40:42] -rw-r--r-- 2 boinc boinc    569682 Oct 12 09:31 input.tar.gz
[2025-10-12 10:40:42] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:31 start_atlas.sh
[2025-10-12 10:40:42] -rw------- 1 boinc boinc 190896125 Oct 12 10:39 HITS.pool.root.1
[2025-10-12 10:40:42] -rw------- 1 boinc boinc    901120 Oct 12 10:40 result.tar.gz
10:40:43 (3474386): run_atlas exited; CPU time 15487.531225
10:40:43 (3474386): called boinc_finish(0)

</stderr_txt>
]]>

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