Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:35 (536574): wrapper (7.7.26015): starting
00:01:35 (536574): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 00:01:35] Arguments: --nthreads 12
[2025-10-12 00:01:35] Threads: 12
[2025-10-12 00:01:35] Checking for CVMFS
[2025-10-12 00:01:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:01:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:01:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:01:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:01:38] 2.13.2.0 7655 56781 357092 151606 1 474 20082733 32935936 32196 16776704 10 89249210 99.529 112113084 8795 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 00:01:38] CVMFS is ok
[2025-10-12 00:01:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:01:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:01:38] Further information can be found at the LHC@home message board.
[2025-10-12 00:01:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:01:38] Checking for apptainer binary...
[2025-10-12 00:01:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:01:38] Running /usr/bin/apptainer --version
[2025-10-12 00:01:38] apptainer version 1.4.3-1.el9
[2025-10-12 00:01:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:01:39] c6-12-25-4.aglt2.org
[2025-10-12 00:01:39] apptainer works
[2025-10-12 00:01:39] Set ATHENA_PROC_NUMBER=12
[2025-10-12 00:01:39] Set ATHENA_CORE_NUMBER=12
[2025-10-12 00:01:39] Starting ATLAS job with PandaID=6838631641
[2025-10-12 00:01:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:28:10]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:28:10] 2025-10-12 14:27:25,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:28:10] 2025-10-12 14:27:25,210 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 999.9994687499999
[2025-10-12 10:28:10] 2025-10-12 14:27:25,352 | INFO     | time since job start (37483s) is within the limit (172800.0s)
[2025-10-12 10:28:10] 2025-10-12 14:27:25,444 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6838631641/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 10:28:10] 2025-10-12 14:27:25,467 | INFO     | extracted standard info from prmon json
[2025-10-12 10:28:10] 2025-10-12 14:27:25,468 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 10:28:10] 2025-10-12 14:27:25,468 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 10:28:10] 2025-10-12 14:27:25,489 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:28:10] 2025-10-12 14:27:25,490 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:28:10] 2025-10-12 14:27:25,659 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:28:10] 2025-10-12 14:27:25,665 | INFO     | sum of square deviations: 71077710321.69109
[2025-10-12 10:28:10] 2025-10-12 14:27:25,748 | INFO     | sum of deviations: 543358356282.73047
[2025-10-12 10:28:10] 2025-10-12 14:27:25,749 | INFO     | mean x: 1760260549.259804
[2025-10-12 10:28:10] 2025-10-12 14:27:25,749 | INFO     | mean y: 2395939.586601307
[2025-10-12 10:28:10] 2025-10-12 14:27:25,749 | INFO     | -- intersect: -13454034695.929506
[2025-10-12 10:28:10] 2025-10-12 14:27:25,750 | INFO     | intersect: -13454034695.929506
[2025-10-12 10:28:10] 2025-10-12 14:27:25,752 | INFO     | chi2: 6.272977551852092
[2025-10-12 10:28:10] 2025-10-12 14:27:25,755 | INFO     | sum of square deviations: 69350099296.62599
[2025-10-12 10:28:10] 2025-10-12 14:27:25,779 | INFO     | sum of deviations: 614076953194.4713
[2025-10-12 10:28:10] 2025-10-12 14:27:25,780 | INFO     | mean x: 1760260396.7726524
[2025-10-12 10:28:10] 2025-10-12 14:27:25,780 | INFO     | mean y: 2402148.3657331136
[2025-10-12 10:28:10] 2025-10-12 14:27:25,780 | INFO     | -- intersect: -15584242315.626131
[2025-10-12 10:28:10] 2025-10-12 14:27:25,780 | INFO     | intersect: -15584242315.626131
[2025-10-12 10:28:10] 2025-10-12 14:27:25,783 | INFO     | chi2: 4.858528146269471
[2025-10-12 10:28:10] 2025-10-12 14:27:25,783 | INFO     | current chi2=4.858528146269471 (change=22.548293755092523 %)
[2025-10-12 10:28:10] 2025-10-12 14:27:25,783 | INFO     | right removable region: 606
[2025-10-12 10:28:10] 2025-10-12 14:27:25,786 | INFO     | sum of square deviations: 69349516746.62604
[2025-10-12 10:28:10] 2025-10-12 14:27:25,809 | INFO     | sum of deviations: 371936803512.4106
[2025-10-12 10:28:10] 2025-10-12 14:27:25,809 | INFO     | mean x: 1760260701.7726524
[2025-10-12 10:28:10] 2025-10-12 14:27:25,810 | INFO     | mean y: 2411056.024711697
[2025-10-12 10:28:10] 2025-10-12 14:27:25,810 | INFO     | -- intersect: -9438256586.373611
[2025-10-12 10:28:10] 2025-10-12 14:27:25,811 | INFO     | intersect: -9438256586.373611
[2025-10-12 10:28:10] 2025-10-12 14:27:25,814 | INFO     | chi2: 3.2364021402936975
[2025-10-12 10:28:10] 2025-10-12 14:27:25,814 | INFO     | current chi2=3.2364021402936975 (change=48.40724179957966 %)
[2025-10-12 10:28:10] 2025-10-12 14:27:25,816 | INFO     | sum of square deviations: 67649519473.28438
[2025-10-12 10:28:10] 2025-10-12 14:27:25,840 | INFO     | sum of deviations: 289274864532.3949
[2025-10-12 10:28:10] 2025-10-12 14:27:25,841 | INFO     | mean x: 1760260854.2873755
[2025-10-12 10:28:10] 2025-10-12 14:27:25,841 | INFO     | mean y: 2418466.604651163
[2025-10-12 10:28:10] 2025-10-12 14:27:25,842 | INFO     | -- intersect: -7524600559.25476
[2025-10-12 10:28:10] 2025-10-12 14:27:25,842 | INFO     | intersect: -7524600559.25476
[2025-10-12 10:28:10] 2025-10-12 14:27:25,844 | INFO     | chi2: 2.602930347548485
[2025-10-12 10:28:10] 2025-10-12 14:27:25,845 | INFO     | current chi2=2.602930347548485 (change=19.57333376030107 %)
[2025-10-12 10:28:10] 2025-10-12 14:27:25,845 | INFO     | left removable region: 20
[2025-10-12 10:28:10] 2025-10-12 14:27:25,847 | INFO     | sum of square deviations: 62397406142.04256
[2025-10-12 10:28:10] 2025-10-12 14:27:25,867 | INFO     | sum of deviations: 256212663327.01205
[2025-10-12 10:28:10] 2025-10-12 14:27:25,868 | INFO     | mean x: 1760260976.3225255
[2025-10-12 10:28:10] 2025-10-12 14:27:25,868 | INFO     | mean y: 2434677.370307167
[2025-10-12 10:28:10] 2025-10-12 14:27:25,868 | INFO     | -- intersect: -7225448351.413515
[2025-10-12 10:28:10] 2025-10-12 14:27:25,868 | INFO     | intersect: -7225448351.413515
[2025-10-12 10:28:10] 2025-10-12 14:27:25,870 | INFO     | chi2: 0.6860950622878006
[2025-10-12 10:28:10] 2025-10-12 14:27:25,871 | INFO     | -- intersect: -7225448351.413515
[2025-10-12 10:28:10] 2025-10-12 14:27:25,871 | INFO     | current memory leak: 4.11 B/s (using 586 data points, chi2=0.69)
[2025-10-12 10:28:10] 2025-10-12 14:27:25,873 | INFO     | could have reported an average CPU frequency of 999 MHz (23 samples)
[2025-10-12 10:28:10] 2025-10-12 14:27:25,874 | INFO     | ..............................
[2025-10-12 10:28:10] 2025-10-12 14:27:25,874 | INFO     | . Timing measurements:
[2025-10-12 10:28:10] 2025-10-12 14:27:25,874 | INFO     | . get job = 0 s
[2025-10-12 10:28:10] 2025-10-12 14:27:25,874 | INFO     | . initial setup = 7 s
[2025-10-12 10:28:10] 2025-10-12 14:27:25,874 | INFO     | . payload setup = 44 s
[2025-10-12 10:28:10] 2025-10-12 14:27:25,874 | INFO     | . stage-in = 0 s
[2025-10-12 10:28:10] 2025-10-12 14:27:25,875 | INFO     | . payload execution = 37305 s
[2025-10-12 10:28:10] 2025-10-12 14:27:25,875 | INFO     | . stage-out = 12 s
[2025-10-12 10:28:10] 2025-10-12 14:27:25,875 | INFO     | . log creation = 1 s
[2025-10-12 10:28:10] 2025-10-12 14:27:25,875 | INFO     | ..............................
[2025-10-12 10:28:10] 2025-10-12 14:27:26,828 | INFO     | 
[2025-10-12 10:28:10] 2025-10-12 14:27:26,828 | INFO     | job summary report
[2025-10-12 10:28:10] 2025-10-12 14:27:26,829 | INFO     | --------------------------------------------------
[2025-10-12 10:28:10] 2025-10-12 14:27:26,829 | INFO     | PanDA job id: 6838631641
[2025-10-12 10:28:10] 2025-10-12 14:27:26,829 | INFO     | task id: 46676269
[2025-10-12 10:28:10] 2025-10-12 14:27:26,829 | INFO     | errors: (none)
[2025-10-12 10:28:10] 2025-10-12 14:27:26,830 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:28:10] 2025-10-12 14:27:26,830 | INFO     | pilot state: finished 
[2025-10-12 10:28:10] 2025-10-12 14:27:26,830 | INFO     | transexitcode: 0
[2025-10-12 10:28:10] 2025-10-12 14:27:26,830 | INFO     | exeerrorcode: 0
[2025-10-12 10:28:10] 2025-10-12 14:27:26,831 | INFO     | exeerrordiag: 
[2025-10-12 10:28:10] 2025-10-12 14:27:26,831 | INFO     | exitcode: 0
[2025-10-12 10:28:10] 2025-10-12 14:27:26,831 | INFO     | exitmsg: OK
[2025-10-12 10:28:10] 2025-10-12 14:27:26,831 | INFO     | cpuconsumptiontime: 118423 s
[2025-10-12 10:28:10] 2025-10-12 14:27:26,832 | INFO     | nevents: 400
[2025-10-12 10:28:10] 2025-10-12 14:27:26,832 | INFO     | neventsw: 0
[2025-10-12 10:28:10] 2025-10-12 14:27:26,832 | INFO     | pid: 579550
[2025-10-12 10:28:10] 2025-10-12 14:27:26,832 | INFO     | pgrp: 579550
[2025-10-12 10:28:10] 2025-10-12 14:27:26,833 | INFO     | corecount: 12
[2025-10-12 10:28:10] 2025-10-12 14:27:26,833 | INFO     | event service: False
[2025-10-12 10:28:10] 2025-10-12 14:27:26,833 | INFO     | sizes: {0: 2348029, 1: 2348630, 3: 2348742, 4: 2348742, 5: 2348997, 17: 2348997, 28: 2349153, 34: 2349443, 39: 2349471, 37353: 2387959, 37354: 2387958, 37367: 2397
[2025-10-12 10:28:10] 2025-10-12 14:27:26,833 | INFO     | --------------------------------------------------
[2025-10-12 10:28:10] 2025-10-12 14:27:26,834 | INFO     | 
[2025-10-12 10:28:10] 2025-10-12 14:27:26,834 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-12 10:28:10] 2025-10-12 14:27:27,112 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,113 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,113 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,113 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,114 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,114 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,114 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,114 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,115 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,115 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,115 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,115 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,138 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,138 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,139 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,139 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,139 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,139 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:28:10] 2025-10-12 14:27:27,139 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,140 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:28:10] 2025-10-12 14:27:27,140 | INFO     | job 6838631641 has completed (purged errors)
[2025-10-12 10:28:10] 2025-10-12 14:27:27,140 | INFO     | overall cleanup function is called
[2025-10-12 10:28:10] 2025-10-12 14:27:28,222 | INFO     | --- collectZombieJob: --- 10, [579550]
[2025-10-12 10:28:10] 2025-10-12 14:27:28,222 | INFO     | zombie collector waiting for pid 579550
[2025-10-12 10:28:10] 2025-10-12 14:27:28,223 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:28:10] 2025-10-12 14:27:28,223 | INFO     | collected zombie processes
[2025-10-12 10:28:10] 2025-10-12 14:27:28,223 | INFO     | will attempt to kill all subprocesses of pid=579550
[2025-10-12 10:28:10] 2025-10-12 14:27:34,217 | INFO     | PID=552595 has CPU usage=11.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 10:28:10] 2025-10-12 14:27:34,218 | INFO     | .. there are 37 such processes running
[2025-10-12 10:28:10] 2025-10-12 14:27:34,348 | INFO     | process IDs to be killed: [579550] (in reverse order)
[2025-10-12 10:28:10] 2025-10-12 14:27:34,787 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:28:10] 2025-10-12 14:27:34,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:28:10] 2025-10-12 14:27:34,833 | INFO     | did not find any defunct processes belonging to 579550
[2025-10-12 10:28:10] 2025-10-12 14:27:34,933 | INFO     | did not find any defunct processes belonging to 579550
[2025-10-12 10:28:10] 2025-10-12 14:27:34,939 | INFO     | ready for new job
[2025-10-12 10:28:10] 2025-10-12 14:27:34,939 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:28:10] 2025-10-12 14:27:34,962 | INFO     | ***************************************
[2025-10-12 10:28:10] 2025-10-12 14:27:34,962 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:28:10] 2025-10-12 14:27:34,963 | INFO     | ***************************************
[2025-10-12 10:28:10] 2025-10-12 14:27:34,963 | INFO     | 
[2025-10-12 10:28:10] 2025-10-12 14:27:35,019 | INFO     | architecture information:
[2025-10-12 10:28:10] 2025-10-12 14:27:35,029 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:28:10] 2025-10-12 14:27:35,123 | INFO     | cat /etc/os-release:
[2025-10-12 10:28:10] NAME="CentOS Linux"
[2025-10-12 10:28:10] VERSION="7 (Core)"
[2025-10-12 10:28:10] ID="centos"
[2025-10-12 10:28:10] ID_LIKE="rhel fedora"
[2025-10-12 10:28:10] VERSION_ID="7"
[2025-10-12 10:28:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:28:10] ANSI_COLOR="0;31"
[2025-10-12 10:28:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:28:10] HOME_URL="https://www.centos.org/"
[2025-10-12 10:28:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:28:10] 
[2025-10-12 10:28:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:28:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:28:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:28:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:28:10] 
[2025-10-12 10:28:10] 2025-10-12 14:27:35,124 | INFO     | ***************************************
[2025-10-12 10:28:10] 2025-10-12 14:27:35,628 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 10:28:10] 2025-10-12 14:27:35,744 | INFO     | sufficient remaining disk space (92894396416 B)
[2025-10-12 10:28:10] 2025-10-12 14:27:35,745 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:28:10] 2025-10-12 14:27:35,745 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:28:10] 2025-10-12 14:27:35,746 | INFO     | update_server=False
[2025-10-12 10:28:10] 2025-10-12 14:27:35,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:28:10] 2025-10-12 14:27:35,799 | INFO     | all data control threads have been joined
[2025-10-12 10:28:10] 2025-10-12 14:27:35,979 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:28:10] 2025-10-12 14:27:35,989 | INFO     | all payload control threads have been joined
[2025-10-12 10:28:10] 2025-10-12 14:27:36,337 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:28:10] 2025-10-12 14:27:36,338 | INFO     | aborting loop
[2025-10-12 10:28:10] 2025-10-12 14:27:36,752 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:36,799 | INFO     | all job control threads have been joined
[2025-10-12 10:28:10] 2025-10-12 14:27:36,806 | INFO     | [data] control thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:36,986 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:36,996 | INFO     | [payload] control thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:37,139 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:37,221 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:28:10] 2025-10-12 14:27:37,345 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:37,725 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:37,749 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:37,760 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:37,775 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:37,806 | INFO     | [job] control thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:37,927 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:37,952 | INFO     | [job] validate thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:37,960 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:38,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:28:10] 2025-10-12 14:27:39,231 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:42,229 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:28:10] 2025-10-12 14:27:58,400 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:28:10] 2025-10-12 14:27:59,859 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398186620736)>', '<ExcThread(monitor, started 140397539993344)>']
[2025-10-12 10:28:10] 2025-10-12 14:28:04,885 | INFO     | all workflow threads have been joined
[2025-10-12 10:28:10] 2025-10-12 14:28:04,886 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:28:10] 2025-10-12 14:28:04,887 | INFO     | traces error code: 0
[2025-10-12 10:28:10] 2025-10-12 14:28:04,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:28:10] 2025-10-12 14:28:09,192 | INFO     | PID=552595 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 10:28:10] 2025-10-12 14:28:09,193 | INFO     | .. there are 37 such processes running
[2025-10-12 10:28:10] 2025-10-12 14:28:09,194 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:28:10] 2025-10-12 14:28:09,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:28:10] 2025-10-12 14:28:09,199 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:28:10] 2025-10-12 14:28:09,199 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:28:10] 2025-10-12 14:28:09,200 | INFO     | [monitor] control thread has ended
[2025-10-12 10:28:10] 2025-10-12 14:28:09,682 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:28:10] 2025-10-12 14:28:09,710 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:28:10] 2025-10-12 14:28:09,727 [wrapper] pilotpid: 552595
[2025-10-12 10:28:10] 2025-10-12 14:28:09,733 [wrapper] Pilot exit status: 0
[2025-10-12 10:28:10] 2025-10-12 14:28:09,767 [wrapper] pandaids: 6838631641
[2025-10-12 10:28:10] 2025-10-12 14:28:10,003 [wrapper] cleanup supervisor_pilot 2098049 552596
[2025-10-12 10:28:10] 2025-10-12 14:28:10,010 [wrapper] Test setup, not cleaning
[2025-10-12 10:28:10] 2025-10-12 14:28:10,017 [wrapper] apfmon messages muted
[2025-10-12 10:28:10] 2025-10-12 14:28:10,028 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:28:10] 2025-10-12 14:28:10,071 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:28:10]  *** Error codes and diagnostics ***
[2025-10-12 10:28:10]     "exeErrorCode": 0,
[2025-10-12 10:28:10]     "exeErrorDiag": "",
[2025-10-12 10:28:10]     "pilotErrorCode": 0,
[2025-10-12 10:28:10]     "pilotErrorDiag": "",
[2025-10-12 10:28:10]  *** Listing of results directory ***
[2025-10-12 10:28:10] total 413244
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 11:50 pilot3.tar.gz
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 12:02 queuedata.json
[2025-10-12 10:28:10] -rwx------. 1 boincer umatlas     36292 Oct 11 12:02 runpilot2-wrapper.sh
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas       100 Oct 12 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:28:10] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 00:01 run_atlas
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas       105 Oct 12 00:01 job.xml
[2025-10-12 10:28:10] -rw-r--r--. 2 boincer umatlas 218939220 Oct 12 00:01 EVNT.46676267._002426.pool.root.1
[2025-10-12 10:28:10] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 00:01 shared
[2025-10-12 10:28:10] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 00:01 input.tar.gz
[2025-10-12 10:28:10] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:01 start_atlas.sh
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas         0 Oct 12 00:01 boinc_lockfile
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 00:01 pandaJob.out
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas    975512 Oct 12 00:02 agis_schedconf.cvmfs.json
[2025-10-12 10:28:10] drwx------. 5 boincer umatlas      4096 Oct 12 00:02 pilot3
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas      6859 Oct 12 10:20 init_data.xml
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas 192603782 Oct 12 10:24 HITS.46676269._060446.pool.root.1
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas       532 Oct 12 10:24 boinc_task_state.xml
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas      1042 Oct 12 10:26 memory_monitor_summary.json
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas   1560580 Oct 12 10:26 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas    723043 Oct 12 10:26 log.46676269._060446.job.log.tgz.1
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas        95 Oct 12 10:27 pilot_heartbeat.json
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas      7842 Oct 12 10:27 heartbeat.json
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas       822 Oct 12 10:28 pilotlog.txt
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 10:28 boinc_mmap_file
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas        29 Oct 12 10:28 wrapper_checkpoint.txt
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas   3133641 Oct 12 10:28 log.46676269._060446.job.log.1
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas       357 Oct 12 10:28 output.list
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas       620 Oct 12 10:28 runtime_log
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas   3880960 Oct 12 10:28 result.tar.gz
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas       662 Oct 12 10:28 sD7MDmVErR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmfCSMDmwiNbMn.diag
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas      8716 Oct 12 10:28 runtime_log.err
[2025-10-12 10:28:10] -rw-r--r--. 1 boincer umatlas     21348 Oct 12 10:28 stderr.txt
[2025-10-12 10:28:10] HITS file was successfully produced:
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas 192603782 Oct 12 10:24 shared/HITS.pool.root.1
[2025-10-12 10:28:10]  *** Contents of shared directory: ***
[2025-10-12 10:28:10] total 406272
[2025-10-12 10:28:10] -rw-r--r--. 2 boincer umatlas 218939220 Oct 12 00:01 ATLAS.root_0
[2025-10-12 10:28:10] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 00:01 input.tar.gz
[2025-10-12 10:28:10] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:01 start_atlas.sh
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas 192603782 Oct 12 10:24 HITS.pool.root.1
[2025-10-12 10:28:10] -rw-------. 1 boincer umatlas   3880960 Oct 12 10:28 result.tar.gz
10:28:33 (536574): run_atlas exited; CPU time 121347.711080
10:28:33 (536574): called boinc_finish(0)

</stderr_txt>
]]>

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