Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:20:36 (14661): wrapper (7.7.26015): starting
17:20:36 (14661): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 17:20:36] Arguments: --nthreads 8
[2025-10-11 17:20:36] Threads: 8
[2025-10-11 17:20:36] Checking for CVMFS
[2025-10-11 17:20:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 17:20:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 17:20:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 17:20:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 17:20:37] 2.11.2.0 1598 215295 126648 151597 1 188 19649427 20275200 873 130560 1 219431120 99.992 11673696 11154 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 17:20:37] CVMFS is ok
[2025-10-11 17:20:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 17:20:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 17:20:37] Further information can be found at the LHC@home message board.
[2025-10-11 17:20:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 17:20:37] Checking for apptainer binary...
[2025-10-11 17:20:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 17:20:37] Running /usr/bin/apptainer --version
[2025-10-11 17:20:37] apptainer version 1.3.2-1.el7
[2025-10-11 17:20:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 17:20:38] c-205-36.aglt2.org
[2025-10-11 17:20:38] apptainer works
[2025-10-11 17:20:38] Set ATHENA_PROC_NUMBER=8
[2025-10-11 17:20:38] Set ATHENA_CORE_NUMBER=8
[2025-10-11 17:20:38] Starting ATLAS job with PandaID=6826123806
[2025-10-11 17:20:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 18:43:05]  *** The last 200 lines of the pilot log: ***
[2025-10-11 18:43:05]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6826123806/log.46373048._068649.job.log.tgz.1
[2025-10-11 18:43:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/40/9e/log.46373048._068649.job.log.tgz.1
[2025-10-11 18:43:05]  workdir=None
[2025-10-11 18:43:05] ]
[2025-10-11 18:43:05] 2025-10-11 22:42:27,385 | INFO     | transferring file log.46373048._068649.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6826123806/log.46373048._068649.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 18:43:05] 2025-10-11 22:42:27,385 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6826123806/log.46373048._068649.job.log.tgz.1 /tmp/boinchome/slots/1/log.46373048._068649.job
[2025-10-11 18:43:05] 2025-10-11 22:42:27,405 | INFO     | adding to output.list: log.46373048._068649.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/40/9e/log.46373048._068649.job.log.tg
[2025-10-11 18:43:05] 2025-10-11 22:42:27,406 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 18:43:05] 2025-10-11 22:42:27,406 | INFO     | summary of transferred files:
[2025-10-11 18:43:05] 2025-10-11 22:42:27,406 | INFO     |  -- lfn=log.46373048._068649.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 18:43:05] 2025-10-11 22:42:27,407 | INFO     | stage-out finished correctly
[2025-10-11 18:43:05] 2025-10-11 22:42:27,943 | INFO     | time since job start (4895s) is within the limit (172800.0s)
[2025-10-11 18:43:05] 2025-10-11 22:42:29,178 | WARNING  | process 24817 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 18:43:05] 2025-10-11 22:42:29,178 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6826123806/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 18:43:05] 2025-10-11 22:42:29,255 | INFO     | number of running child processes to parent process 24817: 1
[2025-10-11 18:43:05] 2025-10-11 22:42:29,256 | INFO     | maximum number of monitored processes: 6
[2025-10-11 18:43:05] 2025-10-11 22:42:29,950 | INFO     | time since job start (4897s) is within the limit (172800.0s)
[2025-10-11 18:43:05] 2025-10-11 22:42:30,021 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 18:43:05] 2025-10-11 22:42:30,465 | INFO     | job 6826123806 has state=finished
[2025-10-11 18:43:05] 2025-10-11 22:42:30,465 | INFO     | preparing for final server update for job 6826123806 in state='finished'
[2025-10-11 18:43:05] 2025-10-11 22:42:30,466 | INFO     | this job has now completed (state=finished)
[2025-10-11 18:43:05] 2025-10-11 22:42:30,467 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 18:43:05] 2025-10-11 22:42:30,467 | INFO     | log transfer has been attempted: DONE
[2025-10-11 18:43:05] 2025-10-11 22:42:30,467 | INFO     | job 6826123806 has finished - writing final server update
[2025-10-11 18:43:05] 2025-10-11 22:42:30,468 | INFO     | total number of processed events: 400 (read)
[2025-10-11 18:43:05] 2025-10-11 22:42:30,469 | INFO     | executing command: lscpu
[2025-10-11 18:43:05] 2025-10-11 22:42:30,502 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 18:43:05] 2025-10-11 22:42:31,758 | INFO     | monitor loop #367: job 0:6826123806 is in state 'finished'
[2025-10-11 18:43:05] 2025-10-11 22:42:31,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 18:43:05] 2025-10-11 22:42:31,956 | INFO     | time since job start (4899s) is within the limit (172800.0s)
[2025-10-11 18:43:05] 2025-10-11 22:42:33,960 | INFO     | time since job start (4901s) is within the limit (172800.0s)
[2025-10-11 18:43:05] 2025-10-11 22:42:34,261 | INFO     | monitor loop #368: job 0:6826123806 is in state 'finished'
[2025-10-11 18:43:05] 2025-10-11 22:42:34,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 18:43:05] 2025-10-11 22:42:35,105 | INFO     | PID=18335 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 18:43:05] 2025-10-11 22:42:35,105 | INFO     | .. there are 2 such processes running
[2025-10-11 18:43:05] 2025-10-11 22:42:36,105 | INFO     | time since job start (4904s) is within the limit (172800.0s)
[2025-10-11 18:43:05] 2025-10-11 22:42:36,120 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 18:43:05] 2025-10-11 22:42:36,124 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2102.0228125
[2025-10-11 18:43:05] 2025-10-11 22:42:36,128 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6826123806/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 18:43:05] 2025-10-11 22:42:36,129 | INFO     | extracted standard info from prmon json
[2025-10-11 18:43:05] 2025-10-11 22:42:36,129 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 18:43:05] 2025-10-11 22:42:36,129 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 18:43:05] 2025-10-11 22:42:36,130 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 18:43:05] 2025-10-11 22:42:36,130 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 18:43:05] 2025-10-11 22:42:36,132 | INFO     | fitting pss+swap vs Time
[2025-10-11 18:43:05] 2025-10-11 22:42:36,132 | INFO     | sum of square deviations: 120605052.0
[2025-10-11 18:43:05] 2025-10-11 22:42:36,133 | INFO     | sum of deviations: -4743717643.0
[2025-10-11 18:43:05] 2025-10-11 22:42:36,133 | INFO     | mean x: 1760220180.0
[2025-10-11 18:43:05] 2025-10-11 22:42:36,133 | INFO     | mean y: 2592287.3561643837
[2025-10-11 18:43:05] 2025-10-11 22:42:36,133 | INFO     | -- intersect: 69236736172.39539
[2025-10-11 18:43:05] 2025-10-11 22:42:36,133 | INFO     | intersect: 69236736172.39539
[2025-10-11 18:43:05] 2025-10-11 22:42:36,134 | INFO     | chi2: 0.019142151881275278
[2025-10-11 18:43:05] 2025-10-11 22:42:36,134 | INFO     | -- intersect: 69236736172.39539
[2025-10-11 18:43:05] 2025-10-11 22:42:36,134 | INFO     | current memory leak: -39.33 B/s (using 73 data points, chi2=0.02)
[2025-10-11 18:43:05] 2025-10-11 22:42:36,134 | INFO     | could have reported an average CPU frequency of 1838 MHz (6 samples)
[2025-10-11 18:43:05] 2025-10-11 22:42:36,135 | INFO     | ..............................
[2025-10-11 18:43:05] 2025-10-11 22:42:36,135 | INFO     | . Timing measurements:
[2025-10-11 18:43:05] 2025-10-11 22:42:36,135 | INFO     | . get job = 0 s
[2025-10-11 18:43:05] 2025-10-11 22:42:36,135 | INFO     | . initial setup = 2 s
[2025-10-11 18:43:05] 2025-10-11 22:42:36,135 | INFO     | . payload setup = 6 s
[2025-10-11 18:43:05] 2025-10-11 22:42:36,135 | INFO     | . stage-in = 0 s
[2025-10-11 18:43:05] 2025-10-11 22:42:36,135 | INFO     | . payload execution = 4868 s
[2025-10-11 18:43:05] 2025-10-11 22:42:36,135 | INFO     | . stage-out = 0 s
[2025-10-11 18:43:05] 2025-10-11 22:42:36,135 | INFO     | . log creation = 0 s
[2025-10-11 18:43:05] 2025-10-11 22:42:36,135 | INFO     | ..............................
[2025-10-11 18:43:05] 2025-10-11 22:42:36,216 | INFO     | 
[2025-10-11 18:43:05] 2025-10-11 22:42:36,216 | INFO     | job summary report
[2025-10-11 18:43:05] 2025-10-11 22:42:36,216 | INFO     | --------------------------------------------------
[2025-10-11 18:43:05] 2025-10-11 22:42:36,216 | INFO     | PanDA job id: 6826123806
[2025-10-11 18:43:05] 2025-10-11 22:42:36,217 | INFO     | task id: 46373048
[2025-10-11 18:43:05] 2025-10-11 22:42:36,217 | INFO     | errors: (none)
[2025-10-11 18:43:05] 2025-10-11 22:42:36,217 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 18:43:05] 2025-10-11 22:42:36,217 | INFO     | pilot state: finished 
[2025-10-11 18:43:05] 2025-10-11 22:42:36,217 | INFO     | transexitcode: 0
[2025-10-11 18:43:05] 2025-10-11 22:42:36,217 | INFO     | exeerrorcode: 0
[2025-10-11 18:43:05] 2025-10-11 22:42:36,217 | INFO     | exeerrordiag: 
[2025-10-11 18:43:05] 2025-10-11 22:42:36,217 | INFO     | exitcode: 0
[2025-10-11 18:43:05] 2025-10-11 22:42:36,217 | INFO     | exitmsg: OK
[2025-10-11 18:43:05] 2025-10-11 22:42:36,218 | INFO     | cpuconsumptiontime: 37054 s
[2025-10-11 18:43:05] 2025-10-11 22:42:36,218 | INFO     | nevents: 400
[2025-10-11 18:43:05] 2025-10-11 22:42:36,218 | INFO     | neventsw: 0
[2025-10-11 18:43:05] 2025-10-11 22:42:36,218 | INFO     | pid: 24817
[2025-10-11 18:43:05] 2025-10-11 22:42:36,218 | INFO     | pgrp: 24817
[2025-10-11 18:43:05] 2025-10-11 22:42:36,218 | INFO     | corecount: 8
[2025-10-11 18:43:05] 2025-10-11 22:42:36,218 | INFO     | event service: False
[2025-10-11 18:43:05] 2025-10-11 22:42:36,218 | INFO     | sizes: {0: 2348841, 1: 2348841, 5: 2349131, 11: 2349187, 4878: 2375399, 4879: 2384397, 4882: 2384581, 4888: 2384775}
[2025-10-11 18:43:05] 2025-10-11 22:42:36,218 | INFO     | --------------------------------------------------
[2025-10-11 18:43:05] 2025-10-11 22:42:36,219 | INFO     | 
[2025-10-11 18:43:05] 2025-10-11 22:42:36,219 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 18:43:05] 2025-10-11 22:42:36,240 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,240 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,240 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,241 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,241 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,241 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,241 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,241 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,241 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,241 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,241 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,242 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,242 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,242 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,242 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,242 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,242 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,242 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 18:43:05] 2025-10-11 22:42:36,242 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,242 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 18:43:05] 2025-10-11 22:42:36,243 | INFO     | job 6826123806 has completed (purged errors)
[2025-10-11 18:43:05] 2025-10-11 22:42:36,243 | INFO     | overall cleanup function is called
[2025-10-11 18:43:05] 2025-10-11 22:42:37,249 | INFO     | --- collectZombieJob: --- 10, [24817]
[2025-10-11 18:43:05] 2025-10-11 22:42:37,249 | INFO     | zombie collector waiting for pid 24817
[2025-10-11 18:43:05] 2025-10-11 22:42:37,249 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 18:43:05] 2025-10-11 22:42:37,249 | INFO     | collected zombie processes
[2025-10-11 18:43:05] 2025-10-11 22:42:37,250 | INFO     | will attempt to kill all subprocesses of pid=24817
[2025-10-11 18:43:05] 2025-10-11 22:42:37,367 | INFO     | process IDs to be killed: [24817] (in reverse order)
[2025-10-11 18:43:05] 2025-10-11 22:42:37,427 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 18:43:05] 2025-10-11 22:42:37,427 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 18:43:05] 2025-10-11 22:42:37,432 | INFO     | did not find any defunct processes belonging to 24817
[2025-10-11 18:43:05] 2025-10-11 22:42:37,435 | INFO     | did not find any defunct processes belonging to 24817
[2025-10-11 18:43:05] 2025-10-11 22:42:37,435 | INFO     | ready for new job
[2025-10-11 18:43:05] 2025-10-11 22:42:37,436 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 18:43:05] 2025-10-11 22:42:37,438 | INFO     | ***************************************
[2025-10-11 18:43:05] 2025-10-11 22:42:37,439 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-11 18:43:05] 2025-10-11 22:42:37,439 | INFO     | ***************************************
[2025-10-11 18:43:05] 2025-10-11 22:42:37,439 | INFO     | 
[2025-10-11 18:43:05] 2025-10-11 22:42:37,440 | INFO     | architecture information:
[2025-10-11 18:43:05] 2025-10-11 22:42:37,441 | INFO     | executing command: cat /etc/os-release
[2025-10-11 18:43:05] 2025-10-11 22:42:37,456 | INFO     | cat /etc/os-release:
[2025-10-11 18:43:05] NAME="CentOS Linux"
[2025-10-11 18:43:05] VERSION="7 (Core)"
[2025-10-11 18:43:05] ID="centos"
[2025-10-11 18:43:05] ID_LIKE="rhel fedora"
[2025-10-11 18:43:05] VERSION_ID="7"
[2025-10-11 18:43:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 18:43:05] ANSI_COLOR="0;31"
[2025-10-11 18:43:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 18:43:05] HOME_URL="https://www.centos.org/"
[2025-10-11 18:43:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 18:43:05] 
[2025-10-11 18:43:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 18:43:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 18:43:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 18:43:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 18:43:05] 
[2025-10-11 18:43:05] 2025-10-11 22:42:37,456 | INFO     | ***************************************
[2025-10-11 18:43:05] 2025-10-11 22:42:37,959 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 18:43:05] 2025-10-11 22:42:37,977 | INFO     | sufficient remaining disk space (32782680064 B)
[2025-10-11 18:43:05] 2025-10-11 22:42:37,977 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 18:43:05] 2025-10-11 22:42:37,978 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 18:43:05] 2025-10-11 22:42:37,978 | INFO     | update_server=False
[2025-10-11 18:43:05] 2025-10-11 22:42:37,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 18:43:05] 2025-10-11 22:42:37,978 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:43:05] 2025-10-11 22:42:37,979 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:43:05] 2025-10-11 22:42:37,979 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-11 18:43:05] 2025-10-11 22:42:37,979 | INFO     | aborting loop
[2025-10-11 18:43:05] 2025-10-11 22:42:37,980 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 18:43:05] 2025-10-11 22:42:37,980 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 18:43:05] 2025-10-11 22:42:37,980 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 18:43:05] 2025-10-11 22:42:37,989 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 18:43:05] 2025-10-11 22:42:38,091 | INFO     | all data control threads have been joined
[2025-10-11 18:43:05] 2025-10-11 22:42:38,815 | INFO     | all job control threads have been joined
[2025-10-11 18:43:05] 2025-10-11 22:42:38,905 | INFO     | all payload control threads have been joined
[2025-10-11 18:43:05] 2025-10-11 22:42:38,984 | INFO     | [job] retrieve thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:38,985 | INFO     | [job] queue monitor thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:38,986 | INFO     | [job] job monitor thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:39,097 | INFO     | [data] control thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:39,222 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:39,288 | INFO     | [job] validate thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:39,437 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:39,700 | INFO     | [payload] failed_post thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:39,822 | INFO     | [job] control thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:39,911 | INFO     | [payload] control thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:39,940 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:39,948 | INFO     | [data] copytool_in thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:39,995 | INFO     | [data] copytool_out thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:40,277 | INFO     | [payload] validate_post thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:40,617 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 18:43:05] 2025-10-11 22:42:44,623 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:48,663 | INFO     | job.realtimelogging is not enabled
[2025-10-11 18:43:05] 2025-10-11 22:42:49,669 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 18:43:05] 2025-10-11 22:42:59,634 | INFO     | [monitor] cgroup control has ended
[2025-10-11 18:43:05] 2025-10-11 22:43:00,312 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140326469908288)>', '<ExcThread(monitor, started 140326035515136)>']
[2025-10-11 18:43:05] 2025-10-11 22:43:01,077 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 18:43:05] 2025-10-11 22:43:01,077 | INFO     | [monitor] control thread has ended
[2025-10-11 18:43:05] 2025-10-11 22:43:05,337 | INFO     | all workflow threads have been joined
[2025-10-11 18:43:05] 2025-10-11 22:43:05,337 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 18:43:05] 2025-10-11 22:43:05,338 | INFO     | traces error code: 0
[2025-10-11 18:43:05] 2025-10-11 22:43:05,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 18:43:05] 2025-10-11 22:43:05,456 [wrapper] ==== pilot stdout END ====
[2025-10-11 18:43:05] 2025-10-11 22:43:05,459 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 18:43:05] 2025-10-11 22:43:05,463 [wrapper] pilotpid: 18335
[2025-10-11 18:43:05] 2025-10-11 22:43:05,466 [wrapper] Pilot exit status: 0
[2025-10-11 18:43:05] 2025-10-11 22:43:05,478 [wrapper] pandaids: 6826123806
[2025-10-11 18:43:05] 2025-10-11 22:43:05,523 [wrapper] cleanup supervisor_pilot 10624 18336
[2025-10-11 18:43:05] 2025-10-11 22:43:05,526 [wrapper] Test setup, not cleaning
[2025-10-11 18:43:05] 2025-10-11 22:43:05,530 [wrapper] apfmon messages muted
[2025-10-11 18:43:05] 2025-10-11 22:43:05,534 [wrapper] ==== wrapper stdout END ====
[2025-10-11 18:43:05] 2025-10-11 22:43:05,537 [wrapper] ==== wrapper stderr END ====
[2025-10-11 18:43:05]  *** Error codes and diagnostics ***
[2025-10-11 18:43:05]     "exeErrorCode": 0,
[2025-10-11 18:43:05]     "exeErrorDiag": "",
[2025-10-11 18:43:05]     "pilotErrorCode": 0,
[2025-10-11 18:43:05]     "pilotErrorDiag": "",
[2025-10-11 18:43:05]  *** Listing of results directory ***
[2025-10-11 18:43:05] total 410488
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas    552446 Sep 30 14:35 pilot3.tar.gz
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas      5112 Sep 30 14:43 queuedata.json
[2025-10-11 18:43:05] -rwx------ 1 boincer umatlas     36292 Sep 30 14:43 runpilot2-wrapper.sh
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas       100 Oct 11 17:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 18:43:05] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 17:20 run_atlas
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas       105 Oct 11 17:20 job.xml
[2025-10-11 18:43:05] -rw-r--r-- 2 boincer umatlas 220945459 Oct 11 17:20 EVNT.46373045._002237.pool.root.1
[2025-10-11 18:43:05] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 17:20 start_atlas.sh
[2025-10-11 18:43:05] drwxrwx--x 2 boincer umatlas      4096 Oct 11 17:20 shared
[2025-10-11 18:43:05] -rw-r--r-- 2 boincer umatlas    565599 Oct 11 17:20 input.tar.gz
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas         0 Oct 11 17:20 boinc_lockfile
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas      2538 Oct 11 17:20 pandaJob.out
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas    975528 Oct 11 17:20 agis_schedconf.cvmfs.json
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas   1560580 Oct 11 17:20 agis_ddmendpoints.agis.ALL.json
[2025-10-11 18:43:05] drwx------ 4 boincer umatlas      4096 Oct 11 17:20 pilot3
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas      6135 Oct 11 18:39 init_data.xml
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas        95 Oct 11 18:41 pilot_heartbeat.json
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas 193415228 Oct 11 18:41 HITS.46373048._068649.pool.root.1
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas       530 Oct 11 18:42 boinc_task_state.xml
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas      1045 Oct 11 18:42 memory_monitor_summary.json
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas    319670 Oct 11 18:42 log.46373048._068649.job.log.tgz.1
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas      7837 Oct 11 18:42 heartbeat.json
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 18:42 boinc_mmap_file
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas        27 Oct 11 18:42 wrapper_checkpoint.txt
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas      4624 Oct 11 18:43 pilotlog.txt
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas    721093 Oct 11 18:43 log.46373048._068649.job.log.1
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas       357 Oct 11 18:43 output.list
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas       620 Oct 11 18:43 runtime_log
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas   1064960 Oct 11 18:43 result.tar.gz
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas      8703 Oct 11 18:43 runtime_log.err
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas       657 Oct 11 18:43 1XxLDmfUuN8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxk6LDm3Q8Pln.diag
[2025-10-11 18:43:05] -rw-r--r-- 1 boincer umatlas     22252 Oct 11 18:43 stderr.txt
[2025-10-11 18:43:05] HITS file was successfully produced:
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas 193415228 Oct 11 18:41 shared/HITS.pool.root.1
[2025-10-11 18:43:05]  *** Contents of shared directory: ***
[2025-10-11 18:43:05] total 406268
[2025-10-11 18:43:05] -rw-r--r-- 2 boincer umatlas 220945459 Oct 11 17:20 ATLAS.root_0
[2025-10-11 18:43:05] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 17:20 start_atlas.sh
[2025-10-11 18:43:05] -rw-r--r-- 2 boincer umatlas    565599 Oct 11 17:20 input.tar.gz
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas 193415228 Oct 11 18:41 HITS.pool.root.1
[2025-10-11 18:43:05] -rw------- 1 boincer umatlas   1064960 Oct 11 18:43 result.tar.gz
18:43:07 (14661): run_atlas exited; CPU time 37056.798630
18:43:07 (14661): called boinc_finish(0)

</stderr_txt>
]]>

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