Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:29:19 (2789685): wrapper (7.7.26015): starting
07:29:19 (2789685): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 07:29:19] Arguments: --nthreads 3
[2025-10-12 07:29:19] Threads: 3
[2025-10-12 07:29:19] Checking for CVMFS
[2025-10-12 07:29:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:29:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:29:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:29:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:29:20] 2.9.2.0 2131560 2300 66508 151609 1 56 36761388 36864001 0 130560 0 1716586 99.990 80063 798 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 07:29:20] CVMFS is ok
[2025-10-12 07:29:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:29:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:29:20] Further information can be found at the LHC@home message board.
[2025-10-12 07:29:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:29:20] Checking for apptainer binary...
[2025-10-12 07:29:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:29:20] Running /usr/bin/apptainer --version
[2025-10-12 07:29:20] apptainer version 1.4.1-1.1
[2025-10-12 07:29:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:29:20] atlasA228
[2025-10-12 07:29:20] apptainer works
[2025-10-12 07:29:20] Set ATHENA_PROC_NUMBER=3
[2025-10-12 07:29:20] Set ATHENA_CORE_NUMBER=3
[2025-10-12 07:29:20] Starting ATLAS job with PandaID=6838632377
[2025-10-12 07:29:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:02:44]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:02:44] 2025-10-12 07:02:05,390 | INFO     | overall cleanup function is called
[2025-10-12 09:02:44] 2025-10-12 07:02:06,396 | INFO     | --- collectZombieJob: --- 10, [2799871]
[2025-10-12 09:02:44] 2025-10-12 07:02:06,396 | INFO     | zombie collector waiting for pid 2799871
[2025-10-12 09:02:44] 2025-10-12 07:02:06,397 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:02:44] 2025-10-12 07:02:06,397 | INFO     | collected zombie processes
[2025-10-12 09:02:44] 2025-10-12 07:02:06,397 | INFO     | will attempt to kill all subprocesses of pid=2799871
[2025-10-12 09:02:44] 2025-10-12 07:02:06,437 | INFO     | process IDs to be killed: [2799871] (in reverse order)
[2025-10-12 09:02:44] 2025-10-12 07:02:06,462 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:02:44] 2025-10-12 07:02:06,462 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:02:44] 2025-10-12 07:02:06,463 | INFO     | did not find any defunct processes belonging to 2799871
[2025-10-12 09:02:44] 2025-10-12 07:02:06,464 | INFO     | did not find any defunct processes belonging to 2799871
[2025-10-12 09:02:44] 2025-10-12 07:02:06,464 | INFO     | ready for new job
[2025-10-12 09:02:44] 2025-10-12 07:02:06,464 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:02:44] 2025-10-12 07:02:06,465 | INFO     | ***************************************
[2025-10-12 09:02:44] 2025-10-12 07:02:06,465 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:02:44] 2025-10-12 07:02:06,465 | INFO     | ***************************************
[2025-10-12 09:02:44] 2025-10-12 07:02:06,465 | INFO     | 
[2025-10-12 09:02:44] 2025-10-12 07:02:06,465 | INFO     | architecture information:
[2025-10-12 09:02:44] 2025-10-12 07:02:06,465 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:02:44] 2025-10-12 07:02:06,475 | INFO     | cat /etc/os-release:
[2025-10-12 09:02:44] NAME="CentOS Linux"
[2025-10-12 09:02:44] VERSION="7 (Core)"
[2025-10-12 09:02:44] ID="centos"
[2025-10-12 09:02:44] ID_LIKE="rhel fedora"
[2025-10-12 09:02:44] VERSION_ID="7"
[2025-10-12 09:02:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:02:44] ANSI_COLOR="0;31"
[2025-10-12 09:02:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:02:44] HOME_URL="https://www.centos.org/"
[2025-10-12 09:02:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:02:44] 
[2025-10-12 09:02:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:02:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:02:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:02:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:02:44] 
[2025-10-12 09:02:44] 2025-10-12 07:02:06,475 | INFO     | ***************************************
[2025-10-12 09:02:44] 2025-10-12 07:02:06,978 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 09:02:44] 2025-10-12 07:02:06,991 | INFO     | sufficient remaining disk space (323315826688 B)
[2025-10-12 09:02:44] 2025-10-12 07:02:06,992 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:02:44] 2025-10-12 07:02:06,992 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:02:44] 2025-10-12 07:02:06,992 | INFO     | update_server=False
[2025-10-12 09:02:44] 2025-10-12 07:02:06,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:02:44] 2025-10-12 07:02:06,992 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:02:44] 2025-10-12 07:02:06,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:02:44] 2025-10-12 07:02:06,992 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:02:44] 2025-10-12 07:02:07,990 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:02:44] 2025-10-12 07:02:07,990 | INFO     | aborting loop
[2025-10-12 09:02:44] 2025-10-12 07:02:07,997 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:07,998 | INFO     | all data control threads have been joined
[2025-10-12 09:02:44] 2025-10-12 07:02:07,999 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:08,003 | INFO     | all job control threads have been joined
[2025-10-12 09:02:44] 2025-10-12 07:02:08,228 | INFO     | all payload control threads have been joined
[2025-10-12 09:02:44] 2025-10-12 07:02:08,297 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:08,444 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:08,494 | INFO     | [job] validate thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:08,649 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:08,769 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:08,996 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:08,998 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:09,003 | INFO     | [data] control thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:09,009 | INFO     | [job] control thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:09,182 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:09,234 | INFO     | [payload] control thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:09,332 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:09,555 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:10,999 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:02:44] 2025-10-12 07:02:38,062 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:02:44] 2025-10-12 07:02:38,088 | INFO     | PID=2793432 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:02:44] 2025-10-12 07:02:38,088 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:02:44] 2025-10-12 07:02:38,088 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:02:44] 2025-10-12 07:02:38,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:02:44] 2025-10-12 07:02:38,889 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642293507904)>', '<ExcThread(monitor, started 139641508316928)>']
[2025-10-12 09:02:44] 2025-10-12 07:02:39,094 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:02:44] 2025-10-12 07:02:39,094 | INFO     | [monitor] control thread has ended
[2025-10-12 09:02:44] 2025-10-12 07:02:43,914 | INFO     | all workflow threads have been joined
[2025-10-12 09:02:44] 2025-10-12 07:02:43,916 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:02:44] 2025-10-12 07:02:43,916 | INFO     | traces error code: 0
[2025-10-12 09:02:44] 2025-10-12 07:02:43,917 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:02:44] 2025-10-12 07:02:43,968 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:02:44] 2025-10-12 07:02:43,971 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:02:44] 2025-10-12 07:02:43,974 [wrapper] pilotpid: 2793432
[2025-10-12 09:02:44] 2025-10-12 07:02:43,976 [wrapper] Pilot exit status: 0
[2025-10-12 09:02:44] 2025-10-12 07:02:43,984 [wrapper] pandaids: 6838632377
[2025-10-12 09:02:44] 2025-10-12 07:02:44,001 [wrapper] cleanup supervisor_pilot 2812204 2793433
[2025-10-12 09:02:44] 2025-10-12 07:02:44,004 [wrapper] Test setup, not cleaning
[2025-10-12 09:02:44] 2025-10-12 07:02:44,006 [wrapper] apfmon messages muted
[2025-10-12 09:02:44] 2025-10-12 07:02:44,009 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:02:44] 2025-10-12 07:02:44,011 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:02:44]  *** Error codes and diagnostics ***
[2025-10-12 09:02:44]     "exeErrorCode": 0,
[2025-10-12 09:02:44]     "exeErrorDiag": "",
[2025-10-12 09:02:44]     "pilotErrorCode": 0,
[2025-10-12 09:02:44]     "pilotErrorDiag": "",
[2025-10-12 09:02:44]  *** Listing of results directory ***
[2025-10-12 09:02:44] total 410628
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc    557409 Oct 11 17:50 pilot3.tar.gz
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc      5112 Oct 11 18:18 queuedata.json
[2025-10-12 09:02:44] -rwx------ 1 boinc boinc     36292 Oct 11 18:19 runpilot2-wrapper.sh
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc       100 Oct 12 07:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:02:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 07:29 run_atlas
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc       105 Oct 12 07:29 job.xml
[2025-10-12 09:02:44] -rw-r--r-- 2 boinc boinc 218577718 Oct 12 07:29 EVNT.46676267._002445.pool.root.1
[2025-10-12 09:02:44] -rw-r--r-- 2 boinc boinc    569685 Oct 12 07:29 input.tar.gz
[2025-10-12 09:02:44] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:29 start_atlas.sh
[2025-10-12 09:02:44] drwxrwx--x 2 boinc boinc      4096 Oct 12 07:29 shared
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:29 boinc_setup_complete
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc      6199 Oct 12 07:29 init_data.xml
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:29 boinc_lockfile
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc      2550 Oct 12 07:29 pandaJob.out
[2025-10-12 09:02:44] -rw------- 1 boinc boinc    975528 Oct 12 07:29 agis_schedconf.cvmfs.json
[2025-10-12 09:02:44] -rw------- 1 boinc boinc   1560580 Oct 12 07:29 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:02:44] drwx------ 5 boinc boinc      4096 Oct 12 07:29 pilot3
[2025-10-12 09:02:44] -rw------- 1 boinc boinc 195861586 Oct 12 09:01 HITS.46676269._060887.pool.root.1
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc       529 Oct 12 09:01 boinc_task_state.xml
[2025-10-12 09:02:44] -rw------- 1 boinc boinc      1019 Oct 12 09:01 memory_monitor_summary.json
[2025-10-12 09:02:44] -rw------- 1 boinc boinc        95 Oct 12 09:01 pilot_heartbeat.json
[2025-10-12 09:02:44] -rw------- 1 boinc boinc    266019 Oct 12 09:02 log.46676269._060887.job.log.tgz.1
[2025-10-12 09:02:44] -rw------- 1 boinc boinc      7767 Oct 12 09:02 heartbeat.json
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc        27 Oct 12 09:02 wrapper_checkpoint.txt
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc      8192 Oct 12 09:02 boinc_mmap_file
[2025-10-12 09:02:44] -rw------- 1 boinc boinc      4752 Oct 12 09:02 pilotlog.txt
[2025-10-12 09:02:44] -rw------- 1 boinc boinc    810947 Oct 12 09:02 log.46676269._060887.job.log.1
[2025-10-12 09:02:44] -rw------- 1 boinc boinc       357 Oct 12 09:02 output.list
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc       620 Oct 12 09:02 runtime_log
[2025-10-12 09:02:44] -rw------- 1 boinc boinc   1095680 Oct 12 09:02 result.tar.gz
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc      8792 Oct 12 09:02 runtime_log.err
[2025-10-12 09:02:44] -rw------- 1 boinc boinc       661 Oct 12 09:02 IbZKDmVUrR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgDSMDmPgJrNn.diag
[2025-10-12 09:02:44] -rw-r--r-- 1 boinc boinc     10709 Oct 12 09:02 stderr.txt
[2025-10-12 09:02:44] HITS file was successfully produced:
[2025-10-12 09:02:44] -rw------- 1 boinc boinc 195861586 Oct 12 09:01 shared/HITS.pool.root.1
[2025-10-12 09:02:44]  *** Contents of shared directory: ***
[2025-10-12 09:02:44] total 406384
[2025-10-12 09:02:44] -rw-r--r-- 2 boinc boinc 218577718 Oct 12 07:29 ATLAS.root_0
[2025-10-12 09:02:44] -rw-r--r-- 2 boinc boinc    569685 Oct 12 07:29 input.tar.gz
[2025-10-12 09:02:44] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:29 start_atlas.sh
[2025-10-12 09:02:44] -rw------- 1 boinc boinc 195861586 Oct 12 09:01 HITS.pool.root.1
[2025-10-12 09:02:44] -rw------- 1 boinc boinc   1095680 Oct 12 09:02 result.tar.gz
09:02:46 (2789685): run_atlas exited; CPU time 15970.224736
09:02:46 (2789685): called boinc_finish(0)

</stderr_txt>
]]>

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