Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:27:07 (2162014): wrapper (7.7.26015): starting
06:27:07 (2162014): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 06:27:07] Arguments: --nthreads 2
[2025-10-12 06:27:07] Threads: 2
[2025-10-12 06:27:07] Checking for CVMFS
[2025-10-12 06:27:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:27:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:27:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:27:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:27:08] 2.9.2.0 1554424 2439 59080 151608 3 56 29903885 36864001 0 130560 0 1452802 99.989 83911 969 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 06:27:08] CVMFS is ok
[2025-10-12 06:27:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 06:27:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 06:27:08] Further information can be found at the LHC@home message board.
[2025-10-12 06:27:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:27:08] Checking for apptainer binary...
[2025-10-12 06:27:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 06:27:08] Running /usr/bin/apptainer --version
[2025-10-12 06:27:08] apptainer version 1.4.1-1.1
[2025-10-12 06:27:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:27:08] thA310
[2025-10-12 06:27:08] apptainer works
[2025-10-12 06:27:08] Set ATHENA_PROC_NUMBER=2
[2025-10-12 06:27:08] Set ATHENA_CORE_NUMBER=2
[2025-10-12 06:27:08] Starting ATLAS job with PandaID=6838850526
[2025-10-12 06:27:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 08:37:02]  *** The last 200 lines of the pilot log: ***
[2025-10-12 08:37:02] 2025-10-12 06:36:30,024 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 08:37:02] 2025-10-12 06:36:30,025 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 08:37:02] 2025-10-12 06:36:30,025 | INFO     | job 6838850526 has completed (purged errors)
[2025-10-12 08:37:02] 2025-10-12 06:36:30,025 | INFO     | overall cleanup function is called
[2025-10-12 08:37:02] 2025-10-12 06:36:31,031 | INFO     | --- collectZombieJob: --- 10, [2172140]
[2025-10-12 08:37:02] 2025-10-12 06:36:31,031 | INFO     | zombie collector waiting for pid 2172140
[2025-10-12 08:37:02] 2025-10-12 06:36:31,031 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 08:37:02] 2025-10-12 06:36:31,032 | INFO     | collected zombie processes
[2025-10-12 08:37:02] 2025-10-12 06:36:31,032 | INFO     | will attempt to kill all subprocesses of pid=2172140
[2025-10-12 08:37:02] 2025-10-12 06:36:31,071 | INFO     | process IDs to be killed: [2172140] (in reverse order)
[2025-10-12 08:37:02] 2025-10-12 06:36:31,092 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 08:37:02] 2025-10-12 06:36:31,092 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 08:37:02] 2025-10-12 06:36:31,093 | INFO     | did not find any defunct processes belonging to 2172140
[2025-10-12 08:37:02] 2025-10-12 06:36:31,094 | INFO     | did not find any defunct processes belonging to 2172140
[2025-10-12 08:37:02] 2025-10-12 06:36:31,094 | INFO     | ready for new job
[2025-10-12 08:37:02] 2025-10-12 06:36:31,094 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 08:37:02] 2025-10-12 06:36:31,094 | INFO     | ***************************************
[2025-10-12 08:37:02] 2025-10-12 06:36:31,094 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 08:37:02] 2025-10-12 06:36:31,094 | INFO     | ***************************************
[2025-10-12 08:37:02] 2025-10-12 06:36:31,095 | INFO     | 
[2025-10-12 08:37:02] 2025-10-12 06:36:31,095 | INFO     | architecture information:
[2025-10-12 08:37:02] 2025-10-12 06:36:31,095 | INFO     | executing command: cat /etc/os-release
[2025-10-12 08:37:02] 2025-10-12 06:36:31,104 | INFO     | cat /etc/os-release:
[2025-10-12 08:37:02] NAME="CentOS Linux"
[2025-10-12 08:37:02] VERSION="7 (Core)"
[2025-10-12 08:37:02] ID="centos"
[2025-10-12 08:37:02] ID_LIKE="rhel fedora"
[2025-10-12 08:37:02] VERSION_ID="7"
[2025-10-12 08:37:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 08:37:02] ANSI_COLOR="0;31"
[2025-10-12 08:37:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 08:37:02] HOME_URL="https://www.centos.org/"
[2025-10-12 08:37:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 08:37:02] 
[2025-10-12 08:37:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 08:37:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 08:37:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 08:37:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 08:37:02] 
[2025-10-12 08:37:02] 2025-10-12 06:36:31,104 | INFO     | ***************************************
[2025-10-12 08:37:02] 2025-10-12 06:36:31,607 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 08:37:02] 2025-10-12 06:36:31,618 | INFO     | sufficient remaining disk space (494311309312 B)
[2025-10-12 08:37:02] 2025-10-12 06:36:31,619 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 08:37:02] 2025-10-12 06:36:31,619 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 08:37:02] 2025-10-12 06:36:31,619 | INFO     | update_server=False
[2025-10-12 08:37:02] 2025-10-12 06:36:31,619 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 08:37:02] 2025-10-12 06:36:31,619 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:37:02] 2025-10-12 06:36:31,619 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 08:37:02] 2025-10-12 06:36:31,619 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:37:02] 2025-10-12 06:36:31,619 | INFO     | all payload control threads have been joined
[2025-10-12 08:37:02] 2025-10-12 06:36:31,619 | INFO     | aborting loop
[2025-10-12 08:37:02] 2025-10-12 06:36:32,434 | INFO     | all job control threads have been joined
[2025-10-12 08:37:02] 2025-10-12 06:36:32,624 | INFO     | [job] queue monitor thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:32,624 | INFO     | [payload] control thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:32,625 | INFO     | [job] retrieve thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:32,626 | INFO     | [job] job monitor thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:32,626 | INFO     | all data control threads have been joined
[2025-10-12 08:37:02] 2025-10-12 06:36:32,639 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:32,756 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:33,000 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 08:37:02] 2025-10-12 06:36:33,128 | INFO     | [data] copytool_in thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:33,440 | INFO     | [job] control thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:33,506 | INFO     | [monitor] cgroup control has ended
[2025-10-12 08:37:02] 2025-10-12 06:36:33,633 | INFO     | [data] control thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:33,791 | INFO     | [payload] validate_post thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:34,032 | INFO     | [payload] failed_post thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:34,105 | INFO     | [job] validate thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:34,111 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:35,006 | INFO     | [data] copytool_out thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:35,625 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:42,442 | INFO     | job.realtimelogging is not enabled
[2025-10-12 08:37:02] 2025-10-12 06:36:43,447 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 08:37:02] 2025-10-12 06:36:45,474 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139964539963200)>', '<ExcThread(monitor, started 139963387606784)>']
[2025-10-12 08:37:02] 2025-10-12 06:36:50,500 | INFO     | all workflow threads have been joined
[2025-10-12 08:37:02] 2025-10-12 06:36:50,501 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 08:37:02] 2025-10-12 06:36:50,501 | INFO     | traces error code: 0
[2025-10-12 08:37:02] 2025-10-12 06:36:50,501 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 08:37:02] 2025-10-12 06:37:01,694 | INFO     | PID=2165718 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 08:37:02] 2025-10-12 06:37:01,694 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 08:37:02] 2025-10-12 06:37:01,694 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 08:37:02] 2025-10-12 06:37:01,694 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 08:37:02] 2025-10-12 06:37:01,694 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 08:37:02] 2025-10-12 06:37:01,694 | INFO     | [monitor] control thread has ended
[2025-10-12 08:37:02] 2025-10-12 06:37:01,735 [wrapper] ==== pilot stdout END ====
[2025-10-12 08:37:02] 2025-10-12 06:37:01,737 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 08:37:02] 2025-10-12 06:37:01,740 [wrapper] pilotpid: 2165718
[2025-10-12 08:37:02] 2025-10-12 06:37:01,742 [wrapper] Pilot exit status: 0
[2025-10-12 08:37:02] 2025-10-12 06:37:01,762 [wrapper] pandaids: 6838850526
[2025-10-12 08:37:02] 2025-10-12 06:37:01,777 [wrapper] cleanup supervisor_pilot 2186582 2165719
[2025-10-12 08:37:02] 2025-10-12 06:37:01,780 [wrapper] Test setup, not cleaning
[2025-10-12 08:37:02] 2025-10-12 06:37:01,783 [wrapper] apfmon messages muted
[2025-10-12 08:37:02] 2025-10-12 06:37:01,786 [wrapper] ==== wrapper stdout END ====
[2025-10-12 08:37:02] 2025-10-12 06:37:01,789 [wrapper] ==== wrapper stderr END ====
[2025-10-12 08:37:02]  *** Error codes and diagnostics ***
[2025-10-12 08:37:02]     "exeErrorCode": 0,
[2025-10-12 08:37:02]     "exeErrorDiag": "",
[2025-10-12 08:37:02]     "pilotErrorCode": 0,
[2025-10-12 08:37:02]     "pilotErrorDiag": "",
[2025-10-12 08:37:02]  *** Listing of results directory ***
[2025-10-12 08:37:02] total 414952
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc    557409 Oct 11 20:56 pilot3.tar.gz
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc      5112 Oct 11 20:58 queuedata.json
[2025-10-12 08:37:02] -rwx------ 1 boinc boinc     36292 Oct 11 21:01 runpilot2-wrapper.sh
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc       100 Oct 12 06:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 08:37:02] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 06:27 run_atlas
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc       105 Oct 12 06:27 job.xml
[2025-10-12 08:37:02] -rw-r--r-- 2 boinc boinc 221713204 Oct 12 06:27 EVNT.46676267._002539.pool.root.1
[2025-10-12 08:37:02] -rw-r--r-- 2 boinc boinc    569680 Oct 12 06:27 input.tar.gz
[2025-10-12 08:37:02] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:27 start_atlas.sh
[2025-10-12 08:37:02] drwxrwx--x 2 boinc boinc      4096 Oct 12 06:27 shared
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:27 boinc_setup_complete
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc      6206 Oct 12 06:27 init_data.xml
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:27 boinc_lockfile
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc      2550 Oct 12 06:27 pandaJob.out
[2025-10-12 08:37:02] -rw------- 1 boinc boinc    975512 Oct 12 06:27 agis_schedconf.cvmfs.json
[2025-10-12 08:37:02] -rw------- 1 boinc boinc   1560580 Oct 12 06:27 agis_ddmendpoints.agis.ALL.json
[2025-10-12 08:37:02] drwx------ 5 boinc boinc      4096 Oct 12 06:27 pilot3
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc       529 Oct 12 08:35 boinc_task_state.xml
[2025-10-12 08:37:02] -rw------- 1 boinc boinc 196499556 Oct 12 08:35 HITS.46676269._063202.pool.root.1
[2025-10-12 08:37:02] -rw------- 1 boinc boinc      1032 Oct 12 08:36 memory_monitor_summary.json
[2025-10-12 08:37:02] -rw------- 1 boinc boinc    288014 Oct 12 08:36 log.46676269._063202.job.log.tgz.1
[2025-10-12 08:37:02] -rw------- 1 boinc boinc      7781 Oct 12 08:36 heartbeat.json
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc      8192 Oct 12 08:36 boinc_mmap_file
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc        27 Oct 12 08:36 wrapper_checkpoint.txt
[2025-10-12 08:37:02] -rw------- 1 boinc boinc       747 Oct 12 08:37 pilotlog.txt
[2025-10-12 08:37:02] -rw------- 1 boinc boinc        95 Oct 12 08:37 pilot_heartbeat.json
[2025-10-12 08:37:02] -rw------- 1 boinc boinc   1113755 Oct 12 08:37 log.46676269._063202.job.log.1
[2025-10-12 08:37:02] -rw------- 1 boinc boinc       357 Oct 12 08:37 output.list
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc       620 Oct 12 08:37 runtime_log
[2025-10-12 08:37:02] -rw------- 1 boinc boinc   1423360 Oct 12 08:37 result.tar.gz
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc      8777 Oct 12 08:37 runtime_log.err
[2025-10-12 08:37:02] -rw------- 1 boinc boinc       664 Oct 12 08:37 qwwMDmA1tR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrLhNDmHhVdCo.diag
[2025-10-12 08:37:02] -rw-r--r-- 1 boinc boinc     11108 Oct 12 08:37 stderr.txt
[2025-10-12 08:37:02] HITS file was successfully produced:
[2025-10-12 08:37:02] -rw------- 1 boinc boinc 196499556 Oct 12 08:35 shared/HITS.pool.root.1
[2025-10-12 08:37:02]  *** Contents of shared directory: ***
[2025-10-12 08:37:02] total 410392
[2025-10-12 08:37:02] -rw-r--r-- 2 boinc boinc 221713204 Oct 12 06:27 ATLAS.root_0
[2025-10-12 08:37:02] -rw-r--r-- 2 boinc boinc    569680 Oct 12 06:27 input.tar.gz
[2025-10-12 08:37:02] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:27 start_atlas.sh
[2025-10-12 08:37:02] -rw------- 1 boinc boinc 196499556 Oct 12 08:35 HITS.pool.root.1
[2025-10-12 08:37:02] -rw------- 1 boinc boinc   1423360 Oct 12 08:37 result.tar.gz
08:37:03 (2162014): run_atlas exited; CPU time 15114.680188
08:37:03 (2162014): called boinc_finish(0)

</stderr_txt>
]]>

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