Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:59:33 (3556887): wrapper (7.7.26015): starting
13:59:33 (3556887): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 13:59:33] Arguments: --nthreads 4
[2025-10-12 13:59:33] Threads: 4
[2025-10-12 13:59:33] Checking for CVMFS
[2025-10-12 13:59:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 13:59:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 13:59:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 13:59:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 13:59:33] 2.13.2.0 1261730 1895 50684 151604 3 57 3689504 6144000 2733 130560 0 5058373 99.997 60248 96 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2025-10-12 13:59:33] CVMFS is ok
[2025-10-12 13:59:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 13:59:33] Checking for apptainer binary...
[2025-10-12 13:59:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 13:59:33] Running /usr/bin/apptainer --version
[2025-10-12 13:59:33] apptainer version 1.4.0
[2025-10-12 13:59:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 13:59:33] Zen
[2025-10-12 13:59:33] apptainer works
[2025-10-12 13:59:33] Set ATHENA_PROC_NUMBER=4
[2025-10-12 13:59:33] Set ATHENA_CORE_NUMBER=4
[2025-10-12 13:59:33] Starting ATLAS job with PandaID=6838631706
[2025-10-12 13:59:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:40:01]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:40:01]  status=None
[2025-10-12 15:40:01]  status_code=0
[2025-10-12 15:40:01]  storage_token=
[2025-10-12 15:40:01]  surl=/home/michael/Boinc/BOINC/slots/1/PanDA_Pilot-6838631706/log.46676269._060511.job.log.tgz.1
[2025-10-12 15:40:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/0a/log.46676269._060511.job.log.tgz.1
[2025-10-12 15:40:01]  workdir=None
[2025-10-12 15:40:01] ]
[2025-10-12 15:40:01] 2025-10-12 04:38:45,314 | INFO     | transferring file log.46676269._060511.job.log.tgz.1 from /home/michael/Boinc/BOINC/slots/1/PanDA_Pilot-6838631706/log.46676269._060511.job.log.tgz.1 to /home/mich
[2025-10-12 15:40:01] 2025-10-12 04:38:45,314 | INFO     | executing command: /usr/bin/env mv /home/michael/Boinc/BOINC/slots/1/PanDA_Pilot-6838631706/log.46676269._060511.job.log.tgz.1 /home/michael/Boinc/BOINC/slots/1/lo
[2025-10-12 15:40:01] 2025-10-12 04:38:45,332 | INFO     | adding to output.list: log.46676269._060511.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/0a/log.46676269._060511.job.log.tg
[2025-10-12 15:40:01] 2025-10-12 04:38:45,333 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 15:40:01] 2025-10-12 04:38:45,333 | INFO     | summary of transferred files:
[2025-10-12 15:40:01] 2025-10-12 04:38:45,333 | INFO     |  -- lfn=log.46676269._060511.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 15:40:01] 2025-10-12 04:38:45,333 | INFO     | stage-out finished correctly
[2025-10-12 15:40:01] 2025-10-12 04:38:45,840 | INFO     | time since job start (5940s) is within the limit (172800.0s)
[2025-10-12 15:40:01] 2025-10-12 04:38:47,069 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 15:40:01] 2025-10-12 04:38:47,804 | INFO     | job 6838631706 has state=finished
[2025-10-12 15:40:01] 2025-10-12 04:38:47,804 | INFO     | preparing for final server update for job 6838631706 in state='finished'
[2025-10-12 15:40:01] 2025-10-12 04:38:47,845 | INFO     | time since job start (5942s) is within the limit (172800.0s)
[2025-10-12 15:40:01] 2025-10-12 04:38:48,968 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 15:40:01] 2025-10-12 04:38:48,968 | INFO     | this job has now completed (state=finished)
[2025-10-12 15:40:01] 2025-10-12 04:38:48,968 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 15:40:01] 2025-10-12 04:38:48,968 | INFO     | log transfer has been attempted: DONE
[2025-10-12 15:40:01] 2025-10-12 04:38:48,969 | INFO     | job 6838631706 has finished - writing final server update
[2025-10-12 15:40:01] 2025-10-12 04:38:48,969 | INFO     | total number of processed events: 400 (read)
[2025-10-12 15:40:01] 2025-10-12 04:38:48,970 | INFO     | executing command: lscpu
[2025-10-12 15:40:01] 2025-10-12 04:38:48,999 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 15:40:01] 2025-10-12 04:38:49,810 | WARNING  | process 3567281 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 15:40:01] 2025-10-12 04:38:49,810 | INFO     | using path: /home/michael/Boinc/BOINC/slots/1/PanDA_Pilot-6838631706/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:40:01] 2025-10-12 04:38:49,850 | INFO     | time since job start (5944s) is within the limit (172800.0s)
[2025-10-12 15:40:01] 2025-10-12 04:38:49,966 | INFO     | number of running child processes to parent process 3567281: 1
[2025-10-12 15:40:01] 2025-10-12 04:38:49,966 | INFO     | maximum number of monitored processes: 6
[2025-10-12 15:40:01] 2025-10-12 04:38:51,855 | INFO     | time since job start (5946s) is within the limit (172800.0s)
[2025-10-12 15:40:01] 2025-10-12 04:38:52,468 | INFO     | monitor loop #448: job 0:6838631706 is in state 'finished'
[2025-10-12 15:40:01] 2025-10-12 04:38:52,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:40:01] 2025-10-12 04:38:53,860 | INFO     | time since job start (5948s) is within the limit (172800.0s)
[2025-10-12 15:40:01] 2025-10-12 04:38:54,689 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 15:40:01] 2025-10-12 04:38:54,692 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4066.180041666667
[2025-10-12 15:40:01] 2025-10-12 04:38:54,695 | INFO     | using path: /home/michael/Boinc/BOINC/slots/1/PanDA_Pilot-6838631706/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:40:01] 2025-10-12 04:38:54,695 | INFO     | extracted standard info from prmon json
[2025-10-12 15:40:01] 2025-10-12 04:38:54,695 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 15:40:01] 2025-10-12 04:38:54,695 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:40:01] 2025-10-12 04:38:54,695 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:40:01] 2025-10-12 04:38:54,695 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:40:01] 2025-10-12 04:38:54,697 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:40:01] 2025-10-12 04:38:54,697 | INFO     | sum of square deviations: 226022842.5
[2025-10-12 15:40:01] 2025-10-12 04:38:54,697 | INFO     | sum of deviations: -11637948196.0
[2025-10-12 15:40:01] 2025-10-12 04:38:54,697 | INFO     | mean x: 1760241026.5
[2025-10-12 15:40:01] 2025-10-12 04:38:54,697 | INFO     | mean y: 2389726.511111111
[2025-10-12 15:40:01] 2025-10-12 04:38:54,697 | INFO     | -- intersect: 90637449671.30789
[2025-10-12 15:40:01] 2025-10-12 04:38:54,697 | INFO     | intersect: 90637449671.30789
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | chi2: 0.14597643851343756
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | -- intersect: 90637449671.30789
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | current memory leak: -51.49 B/s (using 90 data points, chi2=0.15)
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | could have reported an average CPU frequency of 4186 MHz (7 samples)
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | ..............................
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | . Timing measurements:
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | . get job = 0 s
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | . initial setup = 5 s
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | . payload setup = 4 s
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | . stage-in = 0 s
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | . payload execution = 5916 s
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | . stage-out = 0 s
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | . log creation = 0 s
[2025-10-12 15:40:01] 2025-10-12 04:38:54,698 | INFO     | ..............................
[2025-10-12 15:40:01] 2025-10-12 04:38:54,762 | INFO     | 
[2025-10-12 15:40:01] 2025-10-12 04:38:54,762 | INFO     | job summary report
[2025-10-12 15:40:01] 2025-10-12 04:38:54,762 | INFO     | --------------------------------------------------
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | PanDA job id: 6838631706
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | task id: 46676269
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | errors: (none)
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | pilot state: finished 
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | transexitcode: 0
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | exeerrorcode: 0
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | exeerrordiag: 
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | exitcode: 0
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | exitmsg: OK
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | cpuconsumptiontime: 22631 s
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | nevents: 400
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | neventsw: 0
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | pid: 3567281
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | pgrp: 3567281
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | corecount: 4
[2025-10-12 15:40:01] 2025-10-12 04:38:54,763 | INFO     | event service: False
[2025-10-12 15:40:01] 2025-10-12 04:38:54,764 | INFO     | sizes: {0: 2348697, 1: 2348896, 3: 2349158, 11: 2349186, 5924: 2376050, 5926: 2385070, 5927: 2385254, 5935: 2385448}
[2025-10-12 15:40:01] 2025-10-12 04:38:54,764 | INFO     | --------------------------------------------------
[2025-10-12 15:40:01] 2025-10-12 04:38:54,764 | INFO     | 
[2025-10-12 15:40:01] 2025-10-12 04:38:54,764 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/1
[2025-10-12 15:40:01] 2025-10-12 04:38:54,782 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,782 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,782 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,782 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,782 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,782 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | job 6838631706 has completed (purged errors)
[2025-10-12 15:40:01] 2025-10-12 04:38:54,783 | INFO     | overall cleanup function is called
[2025-10-12 15:40:01] 2025-10-12 04:38:55,790 | INFO     | --- collectZombieJob: --- 10, [3567281]
[2025-10-12 15:40:01] 2025-10-12 04:38:55,791 | INFO     | zombie collector waiting for pid 3567281
[2025-10-12 15:40:01] 2025-10-12 04:38:55,791 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:40:01] 2025-10-12 04:38:55,791 | INFO     | collected zombie processes
[2025-10-12 15:40:01] 2025-10-12 04:38:55,791 | INFO     | will attempt to kill all subprocesses of pid=3567281
[2025-10-12 15:40:01] 2025-10-12 04:38:55,932 | INFO     | process IDs to be killed: [3567281] (in reverse order)
[2025-10-12 15:40:01] 2025-10-12 04:38:55,986 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:40:01] 2025-10-12 04:38:55,986 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:40:01] 2025-10-12 04:38:55,990 | INFO     | did not find any defunct processes belonging to 3567281
[2025-10-12 15:40:01] 2025-10-12 04:38:55,994 | INFO     | did not find any defunct processes belonging to 3567281
[2025-10-12 15:40:01] 2025-10-12 04:38:55,994 | INFO     | ready for new job
[2025-10-12 15:40:01] 2025-10-12 04:38:55,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:40:01] 2025-10-12 04:38:55,995 | INFO     | ***************************************
[2025-10-12 15:40:01] 2025-10-12 04:38:55,995 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:40:01] 2025-10-12 04:38:55,995 | INFO     | ***************************************
[2025-10-12 15:40:01] 2025-10-12 04:38:55,995 | INFO     | 
[2025-10-12 15:40:01] 2025-10-12 04:38:55,996 | INFO     | architecture information:
[2025-10-12 15:40:01] 2025-10-12 04:38:55,997 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:40:01] 2025-10-12 04:38:56,010 | INFO     | cat /etc/os-release:
[2025-10-12 15:40:01] NAME="CentOS Linux"
[2025-10-12 15:40:01] VERSION="7 (Core)"
[2025-10-12 15:40:01] ID="centos"
[2025-10-12 15:40:01] ID_LIKE="rhel fedora"
[2025-10-12 15:40:01] VERSION_ID="7"
[2025-10-12 15:40:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:40:01] ANSI_COLOR="0;31"
[2025-10-12 15:40:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:40:01] HOME_URL="https://www.centos.org/"
[2025-10-12 15:40:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:40:01] 
[2025-10-12 15:40:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:40:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:40:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:40:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:40:01] 
[2025-10-12 15:40:01] 2025-10-12 04:38:56,010 | INFO     | ***************************************
[2025-10-12 15:40:01] 2025-10-12 04:38:56,513 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/1
[2025-10-12 15:40:01] 2025-10-12 04:38:56,527 | INFO     | sufficient remaining disk space (206960590848 B)
[2025-10-12 15:40:01] 2025-10-12 04:38:56,527 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:40:01] 2025-10-12 04:38:56,527 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:40:01] 2025-10-12 04:38:56,527 | INFO     | update_server=False
[2025-10-12 15:40:01] 2025-10-12 04:38:56,527 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:40:01] 2025-10-12 04:38:56,527 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:40:01] 2025-10-12 04:38:56,527 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:40:01] 2025-10-12 04:38:56,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:40:01] 2025-10-12 04:38:56,528 | INFO     | aborting loop
[2025-10-12 15:40:01] 2025-10-12 04:38:56,577 | INFO     | all data control threads have been joined
[2025-10-12 15:40:01] 2025-10-12 04:38:57,296 | INFO     | all job control threads have been joined
[2025-10-12 15:40:01] 2025-10-12 04:38:57,529 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:57,531 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:57,532 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:57,556 | INFO     | all payload control threads have been joined
[2025-10-12 15:40:01] 2025-10-12 04:38:57,581 | INFO     | [data] control thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:57,601 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:57,605 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:57,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:40:01] 2025-10-12 04:38:57,863 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:58,107 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:58,301 | INFO     | [job] control thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:58,533 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:58,562 | INFO     | [payload] control thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:58,621 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:58,768 | INFO     | [job] validate thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:58,834 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:38:58,949 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:39:01,643 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:40:01] 2025-10-12 04:39:27,070 | INFO     | PID=3560700 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 15:40:01] 2025-10-12 04:39:27,070 | INFO     | .. there are 4 such processes running
[2025-10-12 15:40:01] 2025-10-12 04:39:27,070 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:40:01] 2025-10-12 04:39:27,070 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:40:01] 2025-10-12 04:39:27,070 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:40:01] 2025-10-12 04:39:54,956 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:40:01] 2025-10-12 04:39:55,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125189927458624)>', '<ExcThread(monitor, started 125189304088320)>']
[2025-10-12 15:40:01] 2025-10-12 04:39:56,189 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:40:01] 2025-10-12 04:39:56,190 | INFO     | [monitor] control thread has ended
[2025-10-12 15:40:01] 2025-10-12 04:40:01,019 | INFO     | all workflow threads have been joined
[2025-10-12 15:40:01] 2025-10-12 04:40:01,020 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:40:01] 2025-10-12 04:40:01,020 | INFO     | traces error code: 0
[2025-10-12 15:40:01] 2025-10-12 04:40:01,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:40:01] 2025-10-12 04:40:01,106 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:40:01] 2025-10-12 04:40:01,108 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:40:01] 2025-10-12 04:40:01,111 [wrapper] pilotpid: 3560700
[2025-10-12 15:40:01] 2025-10-12 04:40:01,113 [wrapper] Pilot exit status: 0
[2025-10-12 15:40:01] 2025-10-12 04:40:01,120 [wrapper] pandaids: 6838631706
[2025-10-12 15:40:01] 2025-10-12 04:40:01,159 [wrapper] cleanup supervisor_pilot 3671973 3560701
[2025-10-12 15:40:01] 2025-10-12 04:40:01,161 [wrapper] Test setup, not cleaning
[2025-10-12 15:40:01] 2025-10-12 04:40:01,163 [wrapper] apfmon messages muted
[2025-10-12 15:40:01] 2025-10-12 04:40:01,165 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:40:01] 2025-10-12 04:40:01,167 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:40:01]  *** Error codes and diagnostics ***
[2025-10-12 15:40:01]     "exeErrorCode": 0,
[2025-10-12 15:40:01]     "exeErrorDiag": "",
[2025-10-12 15:40:01]     "pilotErrorCode": 0,
[2025-10-12 15:40:01]     "pilotErrorDiag": "",
[2025-10-12 15:40:01]  *** Listing of results directory ***
[2025-10-12 15:40:01] total 412888
[2025-10-12 15:40:01] -rw-r--r-- 1 michael michael    557409 Oct 12 02:50 pilot3.tar.gz
[2025-10-12 15:40:01] -rw-r--r-- 1 michael michael      5112 Oct 12 03:02 queuedata.json
[2025-10-12 15:40:01] -rwx------ 1 michael michael     36292 Oct 12 03:02 runpilot2-wrapper.sh
[2025-10-12 15:40:01] -rw-rw-r-- 1 michael michael       100 Oct 12 13:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:40:01] -rwxr-xr-x 1 michael michael      7986 Oct 12 13:59 run_atlas
[2025-10-12 15:40:01] -rw-rw-r-- 1 michael michael       105 Oct 12 13:59 job.xml
[2025-10-12 15:40:01] -rw-r--r-- 2 michael michael 221677347 Oct 12 13:59 EVNT.46676267._002429.pool.root.1
[2025-10-12 15:40:01] -rw-rw-r-- 1 michael michael      9816 Oct 12 13:59 init_data.xml
[2025-10-12 15:40:01] drwxrwx--x 2 michael michael      4096 Oct 12 13:59 shared
[2025-10-12 15:40:01] -rw-r--r-- 2 michael michael    569681 Oct 12 13:59 input.tar.gz
[2025-10-12 15:40:01] -rw-r--r-- 2 michael michael     15120 Oct 12 13:59 start_atlas.sh
[2025-10-12 15:40:01] -rw-rw-r-- 1 michael michael         0 Oct 12 13:59 boinc_lockfile
[2025-10-12 15:40:01] -rw-rw-r-- 1 michael michael      2550 Oct 12 13:59 pandaJob.out
[2025-10-12 15:40:01] -rw------- 1 michael michael    975496 Oct 12 13:59 agis_schedconf.cvmfs.json
[2025-10-12 15:40:01] -rw------- 1 michael michael   1560580 Oct 12 13:59 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:40:01] drwx------ 5 michael michael      4096 Oct 12 13:59 pilot3
[2025-10-12 15:40:01] -rw------- 1 michael michael 194854036 Oct 12 15:38 HITS.46676269._060511.pool.root.1
[2025-10-12 15:40:01] -rw-rw-r-- 1 michael michael       529 Oct 12 15:38 boinc_task_state.xml
[2025-10-12 15:40:01] -rw------- 1 michael michael        95 Oct 12 15:38 pilot_heartbeat.json
[2025-10-12 15:40:01] -rw------- 1 michael michael      1025 Oct 12 15:38 memory_monitor_summary.json
[2025-10-12 15:40:01] -rw------- 1 michael michael    288856 Oct 12 15:38 log.46676269._060511.job.log.tgz.1
[2025-10-12 15:40:01] -rw------- 1 michael michael      7732 Oct 12 15:38 heartbeat.json
[2025-10-12 15:40:01] -rw-rw-r-- 1 michael michael        27 Oct 12 15:39 wrapper_checkpoint.txt
[2025-10-12 15:40:01] -rw-rw-r-- 1 michael michael      8192 Oct 12 15:39 boinc_mmap_file
[2025-10-12 15:40:01] -rw------- 1 michael michael      4835 Oct 12 15:40 pilotlog.txt
[2025-10-12 15:40:01] -rw------- 1 michael michael    885761 Oct 12 15:40 log.46676269._060511.job.log.1
[2025-10-12 15:40:01] -rw------- 1 michael michael       357 Oct 12 15:40 output.list
[2025-10-12 15:40:01] -rw-rw-r-- 1 michael michael       620 Oct 12 15:40 runtime_log
[2025-10-12 15:40:01] -rw------- 1 michael michael   1198080 Oct 12 15:40 result.tar.gz
[2025-10-12 15:40:01] -rw-rw-r-- 1 michael michael      8797 Oct 12 15:40 runtime_log.err
[2025-10-12 15:40:01] -rw------- 1 michael michael       641 Oct 12 15:40 pTQLDmeErR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9pgNDmOKrbUm.diag
[2025-10-12 15:40:01] -rw-rw-r-- 1 michael michael     21766 Oct 12 15:40 stderr.txt
[2025-10-12 15:40:01] HITS file was successfully produced:
[2025-10-12 15:40:01] -rw------- 1 michael michael 194854036 Oct 12 15:38 shared/HITS.pool.root.1
[2025-10-12 15:40:01]  *** Contents of shared directory: ***
[2025-10-12 15:40:01] total 408528
[2025-10-12 15:40:01] -rw-r--r-- 2 michael michael 221677347 Oct 12 13:59 ATLAS.root_0
[2025-10-12 15:40:01] -rw-r--r-- 2 michael michael    569681 Oct 12 13:59 input.tar.gz
[2025-10-12 15:40:01] -rw-r--r-- 2 michael michael     15120 Oct 12 13:59 start_atlas.sh
[2025-10-12 15:40:01] -rw------- 1 michael michael 194854036 Oct 12 15:38 HITS.pool.root.1
[2025-10-12 15:40:01] -rw------- 1 michael michael   1198080 Oct 12 15:40 result.tar.gz
15:40:02 (3556887): run_atlas exited; CPU time 22688.673210
15:40:02 (3556887): called boinc_finish(0)

</stderr_txt>
]]>

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