Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:21:19 (1978033): wrapper (7.7.26015): starting
14:21:19 (1978033): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 14:21:19] Arguments: --nthreads 3
[2025-10-12 14:21:19] Threads: 3
[2025-10-12 14:21:19] Checking for CVMFS
[2025-10-12 14:21:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:21:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:21:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:21:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:21:19] 2.9.2.0 1949441 124 49972 151620 0 56 27785948 36864000 0 130560 0 71374 99.985 5265 1185 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 14:21:19] CVMFS is ok
[2025-10-12 14:21:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:21:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:21:19] Further information can be found at the LHC@home message board.
[2025-10-12 14:21:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:21:19] Checking for apptainer binary...
[2025-10-12 14:21:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:21:19] Running /usr/bin/apptainer --version
[2025-10-12 14:21:19] apptainer version 1.4.1-1.1
[2025-10-12 14:21:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:21:19] atlasA219a
[2025-10-12 14:21:19] apptainer works
[2025-10-12 14:21:19] Set ATHENA_PROC_NUMBER=3
[2025-10-12 14:21:19] Set ATHENA_CORE_NUMBER=3
[2025-10-12 14:21:19] Starting ATLAS job with PandaID=6838364826
[2025-10-12 14:21:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:01:07]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:01:07] 2025-10-12 14:19:28,870 | INFO     | maximum number of monitored processes: 6
[2025-10-12 17:01:07] 2025-10-12 14:19:29,682 | INFO     | PID=1981757 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:01:07] 2025-10-12 14:19:30,683 | INFO     | time since job start (7085s) is within the limit (172800.0s)
[2025-10-12 17:01:07] 2025-10-12 14:19:31,357 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:01:07] 2025-10-12 14:19:31,358 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4299.47125
[2025-10-12 17:01:07] 2025-10-12 14:19:31,359 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6838364826/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:01:07] 2025-10-12 14:19:31,359 | INFO     | extracted standard info from prmon json
[2025-10-12 17:01:07] 2025-10-12 14:19:31,359 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:01:07] 2025-10-12 14:19:31,359 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:01:07] 2025-10-12 14:19:31,359 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:01:07] 2025-10-12 14:19:31,359 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:01:07] 2025-10-12 14:19:31,360 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:01:07] 2025-10-12 14:19:31,360 | INFO     | sum of square deviations: 483971865.0
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | sum of deviations: -19811271187.5
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | mean x: 1760275213.5
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | mean y: 2460148.7327586208
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | -- intersect: 72058900081.00642
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | intersect: 72058900081.00642
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | chi2: 1.8215639286700414
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | sum of square deviations: 424045160.0
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | sum of deviations: -17563934533.000004
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | mean x: 1760275061.0
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | mean y: 2465871.2972972975
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | -- intersect: 72912992503.59418
[2025-10-12 17:01:07] 2025-10-12 14:19:31,361 | INFO     | intersect: 72912992503.59418
[2025-10-12 17:01:07] 2025-10-12 14:19:31,362 | INFO     | chi2: 1.8200291318845947
[2025-10-12 17:01:07] 2025-10-12 14:19:31,362 | INFO     | current chi2=1.8200291318845947 (change=0.0842570914635558 %)
[2025-10-12 17:01:07] 2025-10-12 14:19:31,362 | INFO     | right removable region: 110
[2025-10-12 17:01:07] 2025-10-12 14:19:31,362 | INFO     | sum of square deviations: 424045160.0
[2025-10-12 17:01:07] 2025-10-12 14:19:31,363 | INFO     | sum of deviations: -36330199989.00001
[2025-10-12 17:01:07] 2025-10-12 14:19:31,363 | INFO     | mean x: 1760275366.0
[2025-10-12 17:01:07] 2025-10-12 14:19:31,363 | INFO     | mean y: 2501245.099099099
[2025-10-12 17:01:07] 2025-10-12 14:19:31,363 | INFO     | -- intersect: 150814636637.68365
[2025-10-12 17:01:07] 2025-10-12 14:19:31,363 | INFO     | intersect: 150814636637.68365
[2025-10-12 17:01:07] 2025-10-12 14:19:31,363 | INFO     | chi2: 0.2063436825717194
[2025-10-12 17:01:07] 2025-10-12 14:19:31,363 | INFO     | current chi2=0.2063436825717194 (change=88.67216904528985 %)
[2025-10-12 17:01:07] 2025-10-12 14:19:31,363 | INFO     | sum of square deviations: 369281342.5
[2025-10-12 17:01:07] 2025-10-12 14:19:31,364 | INFO     | sum of deviations: -32862141124.999996
[2025-10-12 17:01:07] 2025-10-12 14:19:31,364 | INFO     | mean x: 1760275518.5
[2025-10-12 17:01:07] 2025-10-12 14:19:31,364 | INFO     | mean y: 2491569.6226415094
[2025-10-12 17:01:07] 2025-10-12 14:19:31,364 | INFO     | -- intersect: 156648430181.6703
[2025-10-12 17:01:07] 2025-10-12 14:19:31,364 | INFO     | intersect: 156648430181.6703
[2025-10-12 17:01:07] 2025-10-12 14:19:31,364 | INFO     | chi2: 0.2026381090486046
[2025-10-12 17:01:07] 2025-10-12 14:19:31,364 | INFO     | current chi2=0.2026381090486046 (change=1.795826010726951 %)
[2025-10-12 17:01:07] 2025-10-12 14:19:31,364 | INFO     | left removable region: 20
[2025-10-12 17:01:07] 2025-10-12 14:19:31,364 | INFO     | sum of square deviations: 226022842.5
[2025-10-12 17:01:07] 2025-10-12 14:19:31,364 | INFO     | sum of deviations: -22888030332.000004
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | mean x: 1760275640.5
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | mean y: 2475925.5555555555
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | -- intersect: 178255442779.7563
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | intersect: 178255442779.7563
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | chi2: 0.18383979284817797
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | -- intersect: 178255442779.7563
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | current memory leak: -101.26 B/s (using 90 data points, chi2=0.18)
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | could have reported an average CPU frequency of 4242 MHz (7 samples)
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | ..............................
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | . Timing measurements:
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | . get job = 0 s
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | . initial setup = 1 s
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | . payload setup = 3 s
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | . stage-in = 0 s
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | . payload execution = 7058 s
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | . stage-out = 0 s
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | . log creation = 0 s
[2025-10-12 17:01:07] 2025-10-12 14:19:31,365 | INFO     | ..............................
[2025-10-12 17:01:07] 2025-10-12 14:19:31,397 | INFO     | 
[2025-10-12 17:01:07] 2025-10-12 14:19:31,397 | INFO     | job summary report
[2025-10-12 17:01:07] 2025-10-12 14:19:31,397 | INFO     | --------------------------------------------------
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | PanDA job id: 6838364826
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | task id: 46676269
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | errors: (none)
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | pilot state: finished 
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | transexitcode: 0
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | exeerrorcode: 0
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | exeerrordiag: 
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | exitcode: 0
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | exitmsg: OK
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | cpuconsumptiontime: 20475 s
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | nevents: 400
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | neventsw: 0
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | pid: 1988189
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | pgrp: 1988189
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | corecount: 3
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | event service: False
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | sizes: {0: 2348809, 3: 2349071, 11: 2349099, 7065: 2376463, 7066: 2385523, 7072: 2385661}
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | --------------------------------------------------
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | 
[2025-10-12 17:01:07] 2025-10-12 14:19:31,398 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,410 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:01:07] 2025-10-12 14:19:31,411 | INFO     | job 6838364826 has completed (purged errors)
[2025-10-12 17:01:07] 2025-10-12 14:19:31,411 | INFO     | overall cleanup function is called
[2025-10-12 17:01:07] 2025-10-12 14:19:32,417 | INFO     | --- collectZombieJob: --- 10, [1988189]
[2025-10-12 17:01:07] 2025-10-12 14:19:32,417 | INFO     | zombie collector waiting for pid 1988189
[2025-10-12 17:01:07] 2025-10-12 14:19:32,417 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:01:07] 2025-10-12 14:19:32,417 | INFO     | collected zombie processes
[2025-10-12 17:01:07] 2025-10-12 14:19:32,417 | INFO     | will attempt to kill all subprocesses of pid=1988189
[2025-10-12 17:01:07] 2025-10-12 14:19:32,456 | INFO     | process IDs to be killed: [1988189] (in reverse order)
[2025-10-12 17:01:07] 2025-10-12 14:19:32,480 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:01:07] 2025-10-12 14:19:32,480 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:01:07] 2025-10-12 14:19:32,481 | INFO     | did not find any defunct processes belonging to 1988189
[2025-10-12 17:01:07] 2025-10-12 14:19:32,482 | INFO     | did not find any defunct processes belonging to 1988189
[2025-10-12 17:01:07] 2025-10-12 14:19:32,482 | INFO     | ready for new job
[2025-10-12 17:01:07] 2025-10-12 14:19:32,482 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:01:07] 2025-10-12 14:19:32,483 | INFO     | ***************************************
[2025-10-12 17:01:07] 2025-10-12 14:19:32,483 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:01:07] 2025-10-12 14:19:32,483 | INFO     | ***************************************
[2025-10-12 17:01:07] 2025-10-12 14:19:32,483 | INFO     | 
[2025-10-12 17:01:07] 2025-10-12 14:19:32,484 | INFO     | architecture information:
[2025-10-12 17:01:07] 2025-10-12 14:19:32,484 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:01:07] 2025-10-12 14:19:32,492 | INFO     | cat /etc/os-release:
[2025-10-12 17:01:07] NAME="CentOS Linux"
[2025-10-12 17:01:07] VERSION="7 (Core)"
[2025-10-12 17:01:07] ID="centos"
[2025-10-12 17:01:07] ID_LIKE="rhel fedora"
[2025-10-12 17:01:07] VERSION_ID="7"
[2025-10-12 17:01:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:01:07] ANSI_COLOR="0;31"
[2025-10-12 17:01:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:01:07] HOME_URL="https://www.centos.org/"
[2025-10-12 17:01:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:01:07] 
[2025-10-12 17:01:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:01:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:01:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:01:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:01:07] 
[2025-10-12 17:01:07] 2025-10-12 14:19:32,492 | INFO     | ***************************************
[2025-10-12 17:01:07] 2025-10-12 14:19:32,994 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 17:01:07] 2025-10-12 14:19:33,004 | INFO     | sufficient remaining disk space (833673494528 B)
[2025-10-12 17:01:07] 2025-10-12 14:19:33,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:01:07] 2025-10-12 14:19:33,004 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:01:07] 2025-10-12 14:19:33,004 | INFO     | update_server=False
[2025-10-12 17:01:07] 2025-10-12 14:19:33,004 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:01:07] 2025-10-12 14:19:33,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:01:07] 2025-10-12 14:19:33,004 | INFO     | aborting loop
[2025-10-12 17:01:07] 2025-10-12 14:19:33,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:01:07] 2025-10-12 14:19:33,515 | INFO     | all job control threads have been joined
[2025-10-12 17:01:07] 2025-10-12 14:19:33,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:01:07] 2025-10-12 14:19:33,710 | INFO     | all payload control threads have been joined
[2025-10-12 17:01:07] 2025-10-12 14:19:33,866 | INFO     | all data control threads have been joined
[2025-10-12 17:01:07] 2025-10-12 14:19:34,009 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:34,010 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:34,010 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:34,296 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:34,520 | INFO     | [job] control thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:34,564 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:34,715 | INFO     | [payload] control thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:34,871 | INFO     | [data] control thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:34,974 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:35,106 | INFO     | [job] validate thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:35,122 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:35,302 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:35,371 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:35,540 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:36,095 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:01:07] 2025-10-12 14:19:36,949 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:01:07] 2025-10-12 14:19:40,100 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:43,894 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:01:07] 2025-10-12 14:19:44,899 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:01:07] 2025-10-12 14:19:45,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140548653963072)>', '<ExcThread(monitor, started 140548031637248)>']
[2025-10-12 17:01:07] 2025-10-12 14:19:50,527 | INFO     | all workflow threads have been joined
[2025-10-12 17:01:07] 2025-10-12 14:19:50,527 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:01:07] 2025-10-12 14:19:50,527 | INFO     | traces error code: 0
[2025-10-12 17:01:07] 2025-10-12 14:19:50,528 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:01:07] 2025-10-12 14:20:03,810 | INFO     | PID=1981757 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:01:07] 2025-10-12 14:20:03,810 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:01:07] 2025-10-12 14:20:03,810 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:01:07] 2025-10-12 14:20:03,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:01:07] 2025-10-12 14:20:03,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:01:07] 2025-10-12 14:20:03,811 | INFO     | [monitor] control thread has ended
[2025-10-12 17:01:07] 2025-10-12 14:20:03,872 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:01:07] 2025-10-12 14:20:03,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:01:07] 2025-10-12 14:20:03,877 [wrapper] pilotpid: 1981757
[2025-10-12 17:01:07] 2025-10-12 14:20:03,879 [wrapper] Pilot exit status: 0
[2025-10-12 17:01:07] 2025-10-12 14:20:03,887 [wrapper] pandaids: 6838364826
[2025-10-12 17:01:07] 2025-10-12 14:20:03,902 [wrapper] cleanup supervisor_pilot 2003471 1981758
[2025-10-12 17:01:07] 2025-10-12 14:20:03,905 [wrapper] Test setup, not cleaning
[2025-10-12 17:01:07] 2025-10-12 14:20:03,907 [wrapper] apfmon messages muted
[2025-10-12 17:01:07] 2025-10-12 14:20:03,909 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:01:07] 2025-10-12 14:20:03,912 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:01:07]  *** Error codes and diagnostics ***
[2025-10-12 17:01:07]     "exeErrorCode": 0,
[2025-10-12 17:01:07]     "exeErrorDiag": "",
[2025-10-12 17:01:07]     "pilotErrorCode": 0,
[2025-10-12 17:01:07]     "pilotErrorDiag": "",
[2025-10-12 17:01:07]  *** Listing of results directory ***
[2025-10-12 17:01:07] total 411380
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc    557409 Oct 11 13:04 pilot3.tar.gz
[2025-10-12 17:01:07] -rwx------ 1 boinc boinc     36292 Oct 11 13:06 runpilot2-wrapper.sh
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc      5112 Oct 11 13:06 queuedata.json
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc       100 Oct 12 14:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:01:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 14:21 run_atlas
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc       105 Oct 12 14:21 job.xml
[2025-10-12 17:01:07] -rw-r--r-- 2 boinc boinc 222221183 Oct 12 14:21 EVNT.46676267._002247.pool.root.1
[2025-10-12 17:01:07] drwxrwx--x 2 boinc boinc      4096 Oct 12 14:21 shared
[2025-10-12 17:01:07] -rw-r--r-- 2 boinc boinc    569676 Oct 12 14:21 input.tar.gz
[2025-10-12 17:01:07] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:21 start_atlas.sh
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:21 boinc_setup_complete
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc      6199 Oct 12 14:21 init_data.xml
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:21 boinc_lockfile
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc      2549 Oct 12 14:21 pandaJob.out
[2025-10-12 17:01:07] -rw------- 1 boinc boinc    975512 Oct 12 14:21 agis_schedconf.cvmfs.json
[2025-10-12 17:01:07] -rw------- 1 boinc boinc   1560580 Oct 12 14:21 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:01:07] drwx------ 5 boinc boinc      4096 Oct 12 14:21 pilot3
[2025-10-12 17:01:07] -rw------- 1 boinc boinc 192496692 Oct 12 16:19 HITS.46676269._056407.pool.root.1
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc       528 Oct 12 16:19 boinc_task_state.xml
[2025-10-12 17:01:07] -rw------- 1 boinc boinc        95 Oct 12 16:19 pilot_heartbeat.json
[2025-10-12 17:01:07] -rw------- 1 boinc boinc      1019 Oct 12 16:19 memory_monitor_summary.json
[2025-10-12 17:01:07] -rw------- 1 boinc boinc    299939 Oct 12 16:19 log.46676269._056407.job.log.tgz.1
[2025-10-12 17:01:07] -rw------- 1 boinc boinc      7772 Oct 12 16:19 heartbeat.json
[2025-10-12 17:01:07] -rw------- 1 boinc boinc       747 Oct 12 16:20 pilotlog.txt
[2025-10-12 17:01:07] -rw------- 1 boinc boinc   1016869 Oct 12 16:20 log.46676269._056407.job.log.1
[2025-10-12 17:01:07] -rw------- 1 boinc boinc       357 Oct 12 16:20 output.list
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc       620 Oct 12 16:20 runtime_log
[2025-10-12 17:01:07] -rw------- 1 boinc boinc   1331200 Oct 12 16:20 result.tar.gz
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc      8797 Oct 12 16:20 runtime_log.err
[2025-10-12 17:01:07] -rw------- 1 boinc boinc       663 Oct 12 16:20 LTkNDm3bmR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhFgNDmEx4Y0m.diag
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc      8192 Oct 12 17:01 boinc_mmap_file
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc        25 Oct 12 17:01 wrapper_checkpoint.txt
[2025-10-12 17:01:07] -rw-r--r-- 1 boinc boinc     21138 Oct 12 17:01 stderr.txt
[2025-10-12 17:01:07] HITS file was successfully produced:
[2025-10-12 17:01:07] -rw------- 1 boinc boinc 192496692 Oct 12 16:19 shared/HITS.pool.root.1
[2025-10-12 17:01:07]  *** Contents of shared directory: ***
[2025-10-12 17:01:07] total 406888
[2025-10-12 17:01:07] -rw-r--r-- 2 boinc boinc 222221183 Oct 12 14:21 ATLAS.root_0
[2025-10-12 17:01:07] -rw-r--r-- 2 boinc boinc    569676 Oct 12 14:21 input.tar.gz
[2025-10-12 17:01:07] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:21 start_atlas.sh
[2025-10-12 17:01:07] -rw------- 1 boinc boinc 192496692 Oct 12 16:19 HITS.pool.root.1
[2025-10-12 17:01:07] -rw------- 1 boinc boinc   1331200 Oct 12 16:20 result.tar.gz
17:01:09 (1978033): run_atlas exited; CPU time 20533.564707
17:01:09 (1978033): called boinc_finish(0)

</stderr_txt>
]]>

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