Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
22:42:18 (4142293): wrapper (7.7.26015): starting
22:42:18 (4142293): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 22:42:18] Arguments: --nthreads 12
[2025-10-11 22:42:18] Threads: 12
[2025-10-11 22:42:18] Checking for CVMFS
[2025-10-11 22:42:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 22:42:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 22:42:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 22:42:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 22:42:19] 2.13.2.0 3843265 3878 62044 151606 0 188 3315245 6144000 3659 130560 0 23144837 99.998 252466 456 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-11 22:42:19] CVMFS is ok
[2025-10-11 22:42:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 22:42:19] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-11 22:42:19] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-11 22:42:19] Further information can be found at the LHC@home message board.
[2025-10-11 22:42:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 22:42:19] Checking for apptainer binary...
[2025-10-11 22:42:19] apptainer is not installed, using version from CVMFS
[2025-10-11 22:42:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 22:42:20] XeonFire
[2025-10-11 22:42:20] apptainer works
[2025-10-11 22:42:20] Set ATHENA_PROC_NUMBER=12
[2025-10-11 22:42:20] Set ATHENA_CORE_NUMBER=12
[2025-10-11 22:42:20] Starting ATLAS job with PandaID=6838366192
[2025-10-11 22:42:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:38:53]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:38:53] 2025-10-12 04:37:52,031 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-6838366192/log.46676269._057110.job.log.tgz.1 /var/lib/boinc-client/slots/4/log.466762
[2025-10-11 23:38:53] 2025-10-12 04:37:52,047 | INFO     | adding to output.list: log.46676269._057110.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/bd/log.46676269._057110.job.log.tg
[2025-10-11 23:38:53] 2025-10-12 04:37:52,047 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 23:38:53] 2025-10-12 04:37:52,047 | INFO     | summary of transferred files:
[2025-10-11 23:38:53] 2025-10-12 04:37:52,048 | INFO     |  -- lfn=log.46676269._057110.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 23:38:53] 2025-10-12 04:37:52,048 | INFO     | stage-out finished correctly
[2025-10-11 23:38:53] 2025-10-12 04:37:52,098 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 23:38:53] 2025-10-12 04:37:53,748 | INFO     | time since job start (3309s) is within the limit (172800.0s)
[2025-10-11 23:38:53] 2025-10-12 04:37:54,021 | INFO     | monitor loop #243: job 0:6838366192 is in state 'finished'
[2025-10-11 23:38:53] 2025-10-12 04:37:54,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:38:53] 2025-10-12 04:37:54,809 | INFO     | job 6838366192 has state=finished
[2025-10-11 23:38:53] 2025-10-12 04:37:54,810 | INFO     | preparing for final server update for job 6838366192 in state='finished'
[2025-10-11 23:38:53] 2025-10-12 04:37:55,427 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-11 23:38:53] 2025-10-12 04:37:55,427 | INFO     | this job has now completed (state=finished)
[2025-10-11 23:38:53] 2025-10-12 04:37:55,427 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 23:38:53] 2025-10-12 04:37:55,427 | INFO     | log transfer has been attempted: DONE
[2025-10-11 23:38:53] 2025-10-12 04:37:55,427 | INFO     | job 6838366192 has finished - writing final server update
[2025-10-11 23:38:53] 2025-10-12 04:37:55,428 | INFO     | total number of processed events: 400 (read)
[2025-10-11 23:38:53] 2025-10-12 04:37:55,429 | INFO     | executing command: lscpu
[2025-10-11 23:38:53] 2025-10-12 04:37:55,482 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 23:38:53] 2025-10-12 04:37:55,754 | INFO     | time since job start (3311s) is within the limit (172800.0s)
[2025-10-11 23:38:53] 2025-10-12 04:37:56,524 | INFO     | monitor loop #244: job 0:6838366192 is in state 'finished'
[2025-10-11 23:38:53] 2025-10-12 04:37:56,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:38:53] 2025-10-12 04:37:57,760 | INFO     | time since job start (3313s) is within the limit (172800.0s)
[2025-10-11 23:38:53] 2025-10-12 04:37:59,027 | INFO     | monitor loop #245: job 0:6838366192 is in state 'finished'
[2025-10-11 23:38:53] 2025-10-12 04:37:59,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:38:53] 2025-10-12 04:37:59,765 | INFO     | time since job start (3315s) is within the limit (172800.0s)
[2025-10-11 23:38:53] 2025-10-12 04:38:01,531 | INFO     | monitor loop #246: job 0:6838366192 is in state 'finished'
[2025-10-11 23:38:53] 2025-10-12 04:38:01,531 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:38:53] 2025-10-12 04:38:01,771 | INFO     | time since job start (3317s) is within the limit (172800.0s)
[2025-10-11 23:38:53] 2025-10-12 04:38:03,146 | INFO     | PID=4146352 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 23:38:53] 2025-10-12 04:38:03,146 | INFO     | .. there are 5 such processes running
[2025-10-11 23:38:53] 2025-10-12 04:38:04,034 | INFO     | monitor loop #247: job 0:6838366192 is in state 'finished'
[2025-10-11 23:38:53] 2025-10-12 04:38:04,034 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:38:53] 2025-10-12 04:38:04,147 | INFO     | time since job start (3320s) is within the limit (172800.0s)
[2025-10-11 23:38:53] 2025-10-12 04:38:05,398 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 23:38:53] 2025-10-12 04:38:05,413 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2090.9060681818187
[2025-10-11 23:38:53] 2025-10-12 04:38:05,428 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6838366192/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 23:38:53] 2025-10-12 04:38:05,429 | INFO     | extracted standard info from prmon json
[2025-10-11 23:38:53] 2025-10-12 04:38:05,429 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 23:38:53] 2025-10-12 04:38:05,429 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 23:38:53] 2025-10-12 04:38:05,429 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 23:38:53] 2025-10-12 04:38:05,429 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 23:38:53] 2025-10-12 04:38:05,431 | INFO     | fitting pss+swap vs Time
[2025-10-11 23:38:53] 2025-10-12 04:38:05,431 | INFO     | sum of square deviations: 32179208.0
[2025-10-11 23:38:53] 2025-10-12 04:38:05,431 | INFO     | sum of deviations: -790658820.0
[2025-10-11 23:38:53] 2025-10-12 04:38:05,432 | INFO     | mean x: 1760242296.0
[2025-10-11 23:38:53] 2025-10-12 04:38:05,432 | INFO     | mean y: 2702784.0212765955
[2025-10-11 23:38:53] 2025-10-12 04:38:05,432 | INFO     | -- intersect: 43252713681.41349
[2025-10-11 23:38:53] 2025-10-12 04:38:05,432 | INFO     | intersect: 43252713681.41349
[2025-10-11 23:38:53] 2025-10-12 04:38:05,432 | INFO     | chi2: 0.011138701735580256
[2025-10-11 23:38:53] 2025-10-12 04:38:05,432 | INFO     | -- intersect: 43252713681.41349
[2025-10-11 23:38:53] 2025-10-12 04:38:05,433 | INFO     | current memory leak: -24.57 B/s (using 47 data points, chi2=0.01)
[2025-10-11 23:38:53] 2025-10-12 04:38:05,433 | INFO     | could have reported an average CPU frequency of 2103 MHz (5 samples)
[2025-10-11 23:38:53] 2025-10-12 04:38:05,433 | INFO     | ..............................
[2025-10-11 23:38:53] 2025-10-12 04:38:05,433 | INFO     | . Timing measurements:
[2025-10-11 23:38:53] 2025-10-12 04:38:05,433 | INFO     | . get job = 0 s
[2025-10-11 23:38:53] 2025-10-12 04:38:05,433 | INFO     | . initial setup = 14 s
[2025-10-11 23:38:53] 2025-10-12 04:38:05,433 | INFO     | . payload setup = 4 s
[2025-10-11 23:38:53] 2025-10-12 04:38:05,434 | INFO     | . stage-in = 0 s
[2025-10-11 23:38:53] 2025-10-12 04:38:05,434 | INFO     | . payload execution = 3283 s
[2025-10-11 23:38:53] 2025-10-12 04:38:05,434 | INFO     | . stage-out = 1 s
[2025-10-11 23:38:53] 2025-10-12 04:38:05,434 | INFO     | . log creation = 0 s
[2025-10-11 23:38:53] 2025-10-12 04:38:05,434 | INFO     | ..............................
[2025-10-11 23:38:53] 2025-10-12 04:38:05,536 | INFO     | 
[2025-10-11 23:38:53] 2025-10-12 04:38:05,536 | INFO     | job summary report
[2025-10-11 23:38:53] 2025-10-12 04:38:05,537 | INFO     | --------------------------------------------------
[2025-10-11 23:38:53] 2025-10-12 04:38:05,537 | INFO     | PanDA job id: 6838366192
[2025-10-11 23:38:53] 2025-10-12 04:38:05,537 | INFO     | task id: 46676269
[2025-10-11 23:38:53] 2025-10-12 04:38:05,537 | INFO     | errors: (none)
[2025-10-11 23:38:53] 2025-10-12 04:38:05,537 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 23:38:53] 2025-10-12 04:38:05,537 | INFO     | pilot state: finished 
[2025-10-11 23:38:53] 2025-10-12 04:38:05,537 | INFO     | transexitcode: 0
[2025-10-11 23:38:53] 2025-10-12 04:38:05,537 | INFO     | exeerrorcode: 0
[2025-10-11 23:38:53] 2025-10-12 04:38:05,537 | INFO     | exeerrordiag: 
[2025-10-11 23:38:53] 2025-10-12 04:38:05,537 | INFO     | exitcode: 0
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | exitmsg: OK
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | cpuconsumptiontime: 33749 s
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | nevents: 400
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | neventsw: 0
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | pid: 4153373
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | pgrp: 4153373
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | corecount: 12
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | event service: False
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | sizes: {0: 2348691, 1: 2348890, 4: 2349152, 11: 2349180, 3291: 2374659, 3293: 2383855, 3307: 2384025}
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | --------------------------------------------------
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | 
[2025-10-11 23:38:53] 2025-10-12 04:38:05,538 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-10-11 23:38:53] 2025-10-12 04:38:05,557 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,557 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,557 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,557 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,557 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,557 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,558 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,558 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,558 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,558 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,558 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,558 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,558 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,558 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,559 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,559 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,559 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 23:38:53] 2025-10-12 04:38:05,559 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,559 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 23:38:53] 2025-10-12 04:38:05,559 | INFO     | job 6838366192 has completed (purged errors)
[2025-10-11 23:38:53] 2025-10-12 04:38:05,560 | INFO     | overall cleanup function is called
[2025-10-11 23:38:53] 2025-10-12 04:38:06,569 | INFO     | --- collectZombieJob: --- 10, [4153373]
[2025-10-11 23:38:53] 2025-10-12 04:38:06,569 | INFO     | zombie collector waiting for pid 4153373
[2025-10-11 23:38:53] 2025-10-12 04:38:06,569 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:38:53] 2025-10-12 04:38:06,569 | INFO     | collected zombie processes
[2025-10-11 23:38:53] 2025-10-12 04:38:06,570 | INFO     | will attempt to kill all subprocesses of pid=4153373
[2025-10-11 23:38:53] 2025-10-12 04:38:06,877 | INFO     | process IDs to be killed: [4153373] (in reverse order)
[2025-10-11 23:38:53] 2025-10-12 04:38:06,962 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:38:53] 2025-10-12 04:38:06,962 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:38:53] 2025-10-12 04:38:06,976 | INFO     | did not find any defunct processes belonging to 4153373
[2025-10-11 23:38:53] 2025-10-12 04:38:06,987 | INFO     | did not find any defunct processes belonging to 4153373
[2025-10-11 23:38:53] 2025-10-12 04:38:06,987 | INFO     | ready for new job
[2025-10-11 23:38:53] 2025-10-12 04:38:06,987 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:38:53] 2025-10-12 04:38:06,989 | INFO     | ***************************************
[2025-10-11 23:38:53] 2025-10-12 04:38:06,990 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 23:38:53] 2025-10-12 04:38:06,990 | INFO     | ***************************************
[2025-10-11 23:38:53] 2025-10-12 04:38:06,990 | INFO     | 
[2025-10-11 23:38:53] 2025-10-12 04:38:06,997 | INFO     | architecture information:
[2025-10-11 23:38:53] 2025-10-12 04:38:06,998 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:38:53] 2025-10-12 04:38:07,010 | INFO     | cat /etc/os-release:
[2025-10-11 23:38:53] NAME="CentOS Linux"
[2025-10-11 23:38:53] VERSION="7 (Core)"
[2025-10-11 23:38:53] ID="centos"
[2025-10-11 23:38:53] ID_LIKE="rhel fedora"
[2025-10-11 23:38:53] VERSION_ID="7"
[2025-10-11 23:38:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:38:53] ANSI_COLOR="0;31"
[2025-10-11 23:38:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:38:53] HOME_URL="https://www.centos.org/"
[2025-10-11 23:38:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:38:53] 
[2025-10-11 23:38:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:38:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:38:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:38:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:38:53] 
[2025-10-11 23:38:53] 2025-10-12 04:38:07,011 | INFO     | ***************************************
[2025-10-11 23:38:53] 2025-10-12 04:38:07,514 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-10-11 23:38:53] 2025-10-12 04:38:07,527 | INFO     | sufficient remaining disk space (1822976638976 B)
[2025-10-11 23:38:53] 2025-10-12 04:38:07,527 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:38:53] 2025-10-12 04:38:07,527 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:38:53] 2025-10-12 04:38:07,527 | INFO     | update_server=False
[2025-10-11 23:38:53] 2025-10-12 04:38:07,527 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:38:53] 2025-10-12 04:38:07,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:38:53] 2025-10-12 04:38:07,528 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:38:53] 2025-10-12 04:38:07,542 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:38:53] 2025-10-12 04:38:07,542 | INFO     | aborting loop
[2025-10-11 23:38:53] 2025-10-12 04:38:07,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:38:53] 2025-10-12 04:38:07,787 | INFO     | all data control threads have been joined
[2025-10-11 23:38:53] 2025-10-12 04:38:08,195 | INFO     | all payload control threads have been joined
[2025-10-11 23:38:53] 2025-10-12 04:38:08,533 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:08,533 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:08,548 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:08,698 | INFO     | all job control threads have been joined
[2025-10-11 23:38:53] 2025-10-12 04:38:08,793 | INFO     | [data] control thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:08,953 | INFO     | [job] validate thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:09,134 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:09,177 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:09,200 | INFO     | [payload] control thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:09,269 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:09,358 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:09,456 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:09,620 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:09,704 | INFO     | [job] control thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:09,743 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:11,534 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:18,254 | INFO     | job.realtimelogging is not enabled
[2025-10-11 23:38:53] 2025-10-12 04:38:19,259 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:38:53] 2025-10-12 04:38:37,698 | INFO     | PID=4146352 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 23:38:53] 2025-10-12 04:38:37,698 | INFO     | .. there are 5 such processes running
[2025-10-11 23:38:53] 2025-10-12 04:38:37,698 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:38:53] 2025-10-12 04:38:37,699 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:38:53] 2025-10-12 04:38:37,699 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:38:53] 2025-10-12 04:38:48,053 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:38:53] 2025-10-12 04:38:48,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133365592975168)>', '<ExcThread(monitor, started 133365193742080)>']
[2025-10-11 23:38:53] 2025-10-12 04:38:48,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:38:53] 2025-10-12 04:38:48,747 | INFO     | [monitor] control thread has ended
[2025-10-11 23:38:53] 2025-10-12 04:38:53,423 | INFO     | all workflow threads have been joined
[2025-10-11 23:38:53] 2025-10-12 04:38:53,424 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:38:53] 2025-10-12 04:38:53,424 | INFO     | traces error code: 0
[2025-10-11 23:38:53] 2025-10-12 04:38:53,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:38:53] 2025-10-12 04:38:53,532 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:38:53] 2025-10-12 04:38:53,536 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:38:53] 2025-10-12 04:38:53,539 [wrapper] pilotpid: 4146352
[2025-10-11 23:38:53] 2025-10-12 04:38:53,542 [wrapper] Pilot exit status: 0
[2025-10-11 23:38:53] 2025-10-12 04:38:53,553 [wrapper] pandaids: 6838366192
[2025-10-11 23:38:53] 2025-10-12 04:38:53,623 [wrapper] cleanup supervisor_pilot   47854 4146353
[2025-10-11 23:38:53] 2025-10-12 04:38:53,627 [wrapper] Test setup, not cleaning
[2025-10-11 23:38:53] 2025-10-12 04:38:53,630 [wrapper] apfmon messages muted
[2025-10-11 23:38:53] 2025-10-12 04:38:53,633 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:38:53] 2025-10-12 04:38:53,636 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:38:53]  *** Error codes and diagnostics ***
[2025-10-11 23:38:53]     "exeErrorCode": 0,
[2025-10-11 23:38:53]     "exeErrorDiag": "",
[2025-10-11 23:38:53]     "pilotErrorCode": 0,
[2025-10-11 23:38:53]     "pilotErrorDiag": "",
[2025-10-11 23:38:53]  *** Listing of results directory ***
[2025-10-11 23:38:53] total 420296
[2025-10-11 23:38:53] -rw-r--r-- 1 mark mark    557409 Oct 11 06:21 pilot3.tar.gz
[2025-10-11 23:38:53] -rwx------ 1 mark mark     36292 Oct 11 06:45 runpilot2-wrapper.sh
[2025-10-11 23:38:53] -rw-r--r-- 1 mark mark      5112 Oct 11 06:45 queuedata.json
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark       100 Oct 11 22:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:38:53] -rwxr-xr-x 1 mark mark      7986 Oct 11 22:42 run_atlas
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark       105 Oct 11 22:42 job.xml
[2025-10-11 23:38:53] -rw-r--r-- 2 mark mark 223251673 Oct 11 22:42 EVNT.46676267._002293.pool.root.1
[2025-10-11 23:38:53] -rw-r--r-- 2 mark mark     15120 Oct 11 22:42 start_atlas.sh
[2025-10-11 23:38:53] drwxrwx--x 2 mark mark      4096 Oct 11 22:42 shared
[2025-10-11 23:38:53] -rw-r--r-- 2 mark mark    569675 Oct 11 22:42 input.tar.gz
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark      9341 Oct 11 22:42 init_data.xml
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark         0 Oct 11 22:42 boinc_setup_complete
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark         0 Oct 11 22:42 boinc_lockfile
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark      2549 Oct 11 22:42 pandaJob.out
[2025-10-11 23:38:53] -rw------- 1 mark mark    975512 Oct 11 22:42 agis_schedconf.cvmfs.json
[2025-10-11 23:38:53] -rw------- 1 mark mark   1560580 Oct 11 22:42 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:38:53] drwx------ 5 mark mark      4096 Oct 11 22:42 pilot3
[2025-10-11 23:38:53] -rw------- 1 mark mark 201504886 Oct 11 23:37 HITS.46676269._057110.pool.root.1
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark       529 Oct 11 23:37 boinc_task_state.xml
[2025-10-11 23:38:53] -rw------- 1 mark mark        95 Oct 11 23:37 pilot_heartbeat.json
[2025-10-11 23:38:53] -rw------- 1 mark mark      1029 Oct 11 23:37 memory_monitor_summary.json
[2025-10-11 23:38:53] -rw------- 1 mark mark    354554 Oct 11 23:37 log.46676269._057110.job.log.tgz.1
[2025-10-11 23:38:53] -rw------- 1 mark mark      7782 Oct 11 23:38 heartbeat.json
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark      8192 Oct 11 23:38 boinc_mmap_file
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark        27 Oct 11 23:38 wrapper_checkpoint.txt
[2025-10-11 23:38:53] -rw------- 1 mark mark      4904 Oct 11 23:38 pilotlog.txt
[2025-10-11 23:38:53] -rw------- 1 mark mark    502342 Oct 11 23:38 log.46676269._057110.job.log.1
[2025-10-11 23:38:53] -rw------- 1 mark mark       357 Oct 11 23:38 output.list
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark       620 Oct 11 23:38 runtime_log
[2025-10-11 23:38:53] -rw------- 1 mark mark    880640 Oct 11 23:38 result.tar.gz
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark      8759 Oct 11 23:38 runtime_log.err
[2025-10-11 23:38:53] -rw------- 1 mark mark       645 Oct 11 23:38 86HMDmCDnR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmFoRMDm5pAfgn.diag
[2025-10-11 23:38:53] -rw-rw-r-- 1 mark mark     22525 Oct 11 23:38 stderr.txt
[2025-10-11 23:38:53] HITS file was successfully produced:
[2025-10-11 23:38:53] -rw------- 1 mark mark 201504886 Oct 11 23:37 shared/HITS.pool.root.1
[2025-10-11 23:38:53]  *** Contents of shared directory: ***
[2025-10-11 23:38:53] total 416248
[2025-10-11 23:38:53] -rw-r--r-- 2 mark mark 223251673 Oct 11 22:42 ATLAS.root_0
[2025-10-11 23:38:53] -rw-r--r-- 2 mark mark     15120 Oct 11 22:42 start_atlas.sh
[2025-10-11 23:38:53] -rw-r--r-- 2 mark mark    569675 Oct 11 22:42 input.tar.gz
[2025-10-11 23:38:53] -rw------- 1 mark mark 201504886 Oct 11 23:37 HITS.pool.root.1
[2025-10-11 23:38:53] -rw------- 1 mark mark    880640 Oct 11 23:38 result.tar.gz
23:38:54 (4142293): run_atlas exited; CPU time 33884.093948
23:38:54 (4142293): called boinc_finish(0)

</stderr_txt>
]]>

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