Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:09:05 (24344): wrapper (7.7.26015): starting
17:09:05 (24344): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 17:09:05] Arguments: --nthreads 8
[2025-10-11 17:09:05] Threads: 8
[2025-10-11 17:09:05] Checking for CVMFS
[2025-10-11 17:09:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 17:09:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 17:09:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 17:09:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 17:09:05] 2.11.2.0 25047 51830 114224 151595 0 188 13960562 20275200 908 130560 0 60501704 99.978 2358826 23790 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 17:09:05] CVMFS is ok
[2025-10-11 17:09:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 17:09:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 17:09:05] Further information can be found at the LHC@home message board.
[2025-10-11 17:09:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 17:09:05] Checking for apptainer binary...
[2025-10-11 17:09:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 17:09:05] Running /usr/bin/apptainer --version
[2025-10-11 17:09:05] apptainer version 1.3.2-1.el7
[2025-10-11 17:09:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 17:09:06] c-205-37.aglt2.org
[2025-10-11 17:09:06] apptainer works
[2025-10-11 17:09:07] Set ATHENA_PROC_NUMBER=8
[2025-10-11 17:09:07] Set ATHENA_CORE_NUMBER=8
[2025-10-11 17:09:07] Starting ATLAS job with PandaID=6838292678
[2025-10-11 17:09:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 18:15:42]  *** The last 200 lines of the pilot log: ***
[2025-10-11 18:15:42]  status_code=0
[2025-10-11 18:15:42]  storage_token=
[2025-10-11 18:15:42]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6838292678/log.46676269._055117.job.log.tgz.1
[2025-10-11 18:15:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/34/log.46676269._055117.job.log.tgz.1
[2025-10-11 18:15:42]  workdir=None
[2025-10-11 18:15:42] ]
[2025-10-11 18:15:42] 2025-10-11 22:15:00,744 | INFO     | transferring file log.46676269._055117.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6838292678/log.46676269._055117.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 18:15:42] 2025-10-11 22:15:00,744 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6838292678/log.46676269._055117.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._055117.job
[2025-10-11 18:15:42] 2025-10-11 22:15:00,764 | INFO     | adding to output.list: log.46676269._055117.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/34/log.46676269._055117.job.log.tg
[2025-10-11 18:15:42] 2025-10-11 22:15:00,765 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 18:15:42] 2025-10-11 22:15:00,765 | INFO     | summary of transferred files:
[2025-10-11 18:15:42] 2025-10-11 22:15:00,765 | INFO     |  -- lfn=log.46676269._055117.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 18:15:42] 2025-10-11 22:15:00,765 | INFO     | stage-out finished correctly
[2025-10-11 18:15:42] 2025-10-11 22:15:02,005 | INFO     | monitor loop #296: job 0:6838292678 is in state 'finished'
[2025-10-11 18:15:42] 2025-10-11 22:15:02,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 18:15:42] 2025-10-11 22:15:02,387 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 18:15:42] 2025-10-11 22:15:02,515 | INFO     | time since job start (3942s) is within the limit (172800.0s)
[2025-10-11 18:15:42] 2025-10-11 22:15:04,281 | INFO     | job 6838292678 has state=finished
[2025-10-11 18:15:42] 2025-10-11 22:15:04,281 | INFO     | preparing for final server update for job 6838292678 in state='finished'
[2025-10-11 18:15:42] 2025-10-11 22:15:04,282 | INFO     | this job has now completed (state=finished)
[2025-10-11 18:15:42] 2025-10-11 22:15:04,282 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 18:15:42] 2025-10-11 22:15:04,282 | INFO     | log transfer has been attempted: DONE
[2025-10-11 18:15:42] 2025-10-11 22:15:04,282 | INFO     | job 6838292678 has finished - writing final server update
[2025-10-11 18:15:42] 2025-10-11 22:15:04,282 | INFO     | total number of processed events: 400 (read)
[2025-10-11 18:15:42] 2025-10-11 22:15:04,283 | INFO     | executing command: lscpu
[2025-10-11 18:15:42] 2025-10-11 22:15:04,318 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 18:15:42] 2025-10-11 22:15:04,509 | INFO     | monitor loop #297: job 0:6838292678 is in state 'finished'
[2025-10-11 18:15:42] 2025-10-11 22:15:04,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 18:15:42] 2025-10-11 22:15:04,516 | INFO     | time since job start (3944s) is within the limit (172800.0s)
[2025-10-11 18:15:42] 2025-10-11 22:15:05,663 | INFO     | PID=28055 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 18:15:42] 2025-10-11 22:15:05,664 | INFO     | .. there are 2 such processes running
[2025-10-11 18:15:42] 2025-10-11 22:15:06,664 | INFO     | time since job start (3946s) is within the limit (172800.0s)
[2025-10-11 18:15:42] 2025-10-11 22:15:07,012 | INFO     | monitor loop #298: job 0:6838292678 is in state 'finished'
[2025-10-11 18:15:42] 2025-10-11 22:15:07,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 18:15:42] 2025-10-11 22:15:08,670 | INFO     | time since job start (3948s) is within the limit (172800.0s)
[2025-10-11 18:15:42] 2025-10-11 22:15:08,932 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 18:15:42] 2025-10-11 22:15:08,936 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 1459.505875
[2025-10-11 18:15:42] 2025-10-11 22:15:08,940 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838292678/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 18:15:42] 2025-10-11 22:15:08,941 | INFO     | extracted standard info from prmon json
[2025-10-11 18:15:42] 2025-10-11 22:15:08,941 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 18:15:42] 2025-10-11 22:15:08,941 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 18:15:42] 2025-10-11 22:15:08,941 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 18:15:42] 2025-10-11 22:15:08,941 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 18:15:42] 2025-10-11 22:15:08,943 | INFO     | fitting pss+swap vs Time
[2025-10-11 18:15:42] 2025-10-11 22:15:08,944 | INFO     | sum of square deviations: 60482994.5
[2025-10-11 18:15:42] 2025-10-11 22:15:08,944 | INFO     | sum of deviations: 765949458.5
[2025-10-11 18:15:42] 2025-10-11 22:15:08,944 | INFO     | mean x: 1760219030.5
[2025-10-11 18:15:42] 2025-10-11 22:15:08,944 | INFO     | mean y: 2508688.775862069
[2025-10-11 18:15:42] 2025-10-11 22:15:08,944 | INFO     | -- intersect: -22288696044.03329
[2025-10-11 18:15:42] 2025-10-11 22:15:08,945 | INFO     | intersect: -22288696044.03329
[2025-10-11 18:15:42] 2025-10-11 22:15:08,945 | INFO     | chi2: 0.00077571521667491
[2025-10-11 18:15:42] 2025-10-11 22:15:08,945 | INFO     | -- intersect: -22288696044.03329
[2025-10-11 18:15:42] 2025-10-11 22:15:08,945 | INFO     | current memory leak: 12.66 B/s (using 58 data points, chi2=0.00)
[2025-10-11 18:15:42] 2025-10-11 22:15:08,945 | INFO     | could have reported an average CPU frequency of 1751 MHz (6 samples)
[2025-10-11 18:15:42] 2025-10-11 22:15:08,946 | INFO     | ..............................
[2025-10-11 18:15:42] 2025-10-11 22:15:08,946 | INFO     | . Timing measurements:
[2025-10-11 18:15:42] 2025-10-11 22:15:08,946 | INFO     | . get job = 0 s
[2025-10-11 18:15:42] 2025-10-11 22:15:08,946 | INFO     | . initial setup = 2 s
[2025-10-11 18:15:42] 2025-10-11 22:15:08,946 | INFO     | . payload setup = 6 s
[2025-10-11 18:15:42] 2025-10-11 22:15:08,946 | INFO     | . stage-in = 0 s
[2025-10-11 18:15:42] 2025-10-11 22:15:08,946 | INFO     | . payload execution = 3913 s
[2025-10-11 18:15:42] 2025-10-11 22:15:08,946 | INFO     | . stage-out = 0 s
[2025-10-11 18:15:42] 2025-10-11 22:15:08,947 | INFO     | . log creation = 0 s
[2025-10-11 18:15:42] 2025-10-11 22:15:08,947 | INFO     | ..............................
[2025-10-11 18:15:42] 2025-10-11 22:15:09,331 | INFO     | 
[2025-10-11 18:15:42] 2025-10-11 22:15:09,332 | INFO     | job summary report
[2025-10-11 18:15:42] 2025-10-11 22:15:09,332 | INFO     | --------------------------------------------------
[2025-10-11 18:15:42] 2025-10-11 22:15:09,332 | INFO     | PanDA job id: 6838292678
[2025-10-11 18:15:42] 2025-10-11 22:15:09,332 | INFO     | task id: 46676269
[2025-10-11 18:15:42] 2025-10-11 22:15:09,332 | INFO     | errors: (none)
[2025-10-11 18:15:42] 2025-10-11 22:15:09,332 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 18:15:42] 2025-10-11 22:15:09,332 | INFO     | pilot state: finished 
[2025-10-11 18:15:42] 2025-10-11 22:15:09,332 | INFO     | transexitcode: 0
[2025-10-11 18:15:42] 2025-10-11 22:15:09,333 | INFO     | exeerrorcode: 0
[2025-10-11 18:15:42] 2025-10-11 22:15:09,333 | INFO     | exeerrordiag: 
[2025-10-11 18:15:42] 2025-10-11 22:15:09,333 | INFO     | exitcode: 0
[2025-10-11 18:15:42] 2025-10-11 22:15:09,333 | INFO     | exitmsg: OK
[2025-10-11 18:15:42] 2025-10-11 22:15:09,333 | INFO     | cpuconsumptiontime: 29284 s
[2025-10-11 18:15:42] 2025-10-11 22:15:09,333 | INFO     | nevents: 400
[2025-10-11 18:15:42] 2025-10-11 22:15:09,333 | INFO     | neventsw: 0
[2025-10-11 18:15:42] 2025-10-11 22:15:09,333 | INFO     | pid: 2059
[2025-10-11 18:15:42] 2025-10-11 22:15:09,333 | INFO     | pgrp: 2059
[2025-10-11 18:15:42] 2025-10-11 22:15:09,334 | INFO     | corecount: 8
[2025-10-11 18:15:42] 2025-10-11 22:15:09,334 | INFO     | event service: False
[2025-10-11 18:15:42] 2025-10-11 22:15:09,334 | INFO     | sizes: {0: 2348806, 1: 2348806, 5: 2349096, 11: 2349152, 3923: 2375097, 3925: 2384095, 3926: 2384279, 3933: 2384473}
[2025-10-11 18:15:42] 2025-10-11 22:15:09,334 | INFO     | --------------------------------------------------
[2025-10-11 18:15:42] 2025-10-11 22:15:09,334 | INFO     | 
[2025-10-11 18:15:42] 2025-10-11 22:15:09,334 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 18:15:42] 2025-10-11 22:15:09,358 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,358 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,359 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,359 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,359 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,359 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,359 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,359 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,359 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,359 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,360 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,360 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,360 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,360 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,360 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,360 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,361 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 18:15:42] 2025-10-11 22:15:09,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,361 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 18:15:42] 2025-10-11 22:15:09,361 | INFO     | job 6838292678 has completed (purged errors)
[2025-10-11 18:15:42] 2025-10-11 22:15:09,361 | INFO     | overall cleanup function is called
[2025-10-11 18:15:42] 2025-10-11 22:15:10,369 | INFO     | --- collectZombieJob: --- 10, [2059]
[2025-10-11 18:15:42] 2025-10-11 22:15:10,370 | INFO     | zombie collector waiting for pid 2059
[2025-10-11 18:15:42] 2025-10-11 22:15:10,370 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 18:15:42] 2025-10-11 22:15:10,370 | INFO     | collected zombie processes
[2025-10-11 18:15:42] 2025-10-11 22:15:10,370 | INFO     | will attempt to kill all subprocesses of pid=2059
[2025-10-11 18:15:42] 2025-10-11 22:15:10,486 | INFO     | process IDs to be killed: [2059] (in reverse order)
[2025-10-11 18:15:42] 2025-10-11 22:15:10,544 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 18:15:42] 2025-10-11 22:15:10,544 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 18:15:42] 2025-10-11 22:15:10,548 | INFO     | did not find any defunct processes belonging to 2059
[2025-10-11 18:15:42] 2025-10-11 22:15:10,551 | INFO     | did not find any defunct processes belonging to 2059
[2025-10-11 18:15:42] 2025-10-11 22:15:10,552 | INFO     | ready for new job
[2025-10-11 18:15:42] 2025-10-11 22:15:10,552 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 18:15:42] 2025-10-11 22:15:10,554 | INFO     | ***************************************
[2025-10-11 18:15:42] 2025-10-11 22:15:10,554 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 18:15:42] 2025-10-11 22:15:10,554 | INFO     | ***************************************
[2025-10-11 18:15:42] 2025-10-11 22:15:10,554 | INFO     | 
[2025-10-11 18:15:42] 2025-10-11 22:15:10,555 | INFO     | architecture information:
[2025-10-11 18:15:42] 2025-10-11 22:15:10,556 | INFO     | executing command: cat /etc/os-release
[2025-10-11 18:15:42] 2025-10-11 22:15:10,570 | INFO     | cat /etc/os-release:
[2025-10-11 18:15:42] NAME="CentOS Linux"
[2025-10-11 18:15:42] VERSION="7 (Core)"
[2025-10-11 18:15:42] ID="centos"
[2025-10-11 18:15:42] ID_LIKE="rhel fedora"
[2025-10-11 18:15:42] VERSION_ID="7"
[2025-10-11 18:15:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 18:15:42] ANSI_COLOR="0;31"
[2025-10-11 18:15:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 18:15:42] HOME_URL="https://www.centos.org/"
[2025-10-11 18:15:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 18:15:42] 
[2025-10-11 18:15:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 18:15:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 18:15:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 18:15:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 18:15:42] 
[2025-10-11 18:15:42] 2025-10-11 22:15:10,570 | INFO     | ***************************************
[2025-10-11 18:15:42] 2025-10-11 22:15:11,073 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 18:15:42] 2025-10-11 22:15:11,089 | INFO     | sufficient remaining disk space (32550944768 B)
[2025-10-11 18:15:42] 2025-10-11 22:15:11,090 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 18:15:42] 2025-10-11 22:15:11,090 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 18:15:42] 2025-10-11 22:15:11,090 | INFO     | update_server=False
[2025-10-11 18:15:42] 2025-10-11 22:15:11,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 18:15:42] 2025-10-11 22:15:11,090 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:15:42] 2025-10-11 22:15:11,091 | INFO     | aborting loop
[2025-10-11 18:15:42] 2025-10-11 22:15:11,302 | INFO     | all data control threads have been joined
[2025-10-11 18:15:42] 2025-10-11 22:15:11,330 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 18:15:42] 2025-10-11 22:15:11,525 | INFO     | all payload control threads have been joined
[2025-10-11 18:15:42] 2025-10-11 22:15:12,096 | INFO     | [job] retrieve thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:12,096 | INFO     | [job] job monitor thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:12,112 | INFO     | all job control threads have been joined
[2025-10-11 18:15:42] 2025-10-11 22:15:12,179 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:12,218 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:12,308 | INFO     | [data] control thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:12,472 | INFO     | [payload] failed_post thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:12,530 | INFO     | [payload] control thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:12,827 | INFO     | [data] copytool_in thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:12,981 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 18:15:42] 2025-10-11 22:15:13,005 | INFO     | [payload] validate_post thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:13,117 | INFO     | [job] control thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:13,225 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:13,335 | INFO     | [data] copytool_out thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:13,522 | INFO     | [job] validate thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:14,036 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:15:42] 2025-10-11 22:15:15,041 | INFO     | [job] queue monitor thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:16,987 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:21,935 | INFO     | job.realtimelogging is not enabled
[2025-10-11 18:15:42] 2025-10-11 22:15:22,940 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 18:15:42] 2025-10-11 22:15:26,039 | INFO     | [monitor] cgroup control has ended
[2025-10-11 18:15:42] 2025-10-11 22:15:27,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140564263200576)>', '<ExcThread(monitor, started 140563969976064)>']
[2025-10-11 18:15:42] 2025-10-11 22:15:32,103 | INFO     | all workflow threads have been joined
[2025-10-11 18:15:42] 2025-10-11 22:15:32,103 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 18:15:42] 2025-10-11 22:15:32,103 | INFO     | traces error code: 0
[2025-10-11 18:15:42] 2025-10-11 22:15:32,103 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 18:15:42] 2025-10-11 22:15:41,887 | INFO     | PID=28055 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 18:15:42] 2025-10-11 22:15:41,887 | INFO     | .. there are 2 such processes running
[2025-10-11 18:15:42] 2025-10-11 22:15:41,887 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 18:15:42] 2025-10-11 22:15:41,887 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 18:15:42] 2025-10-11 22:15:41,887 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 18:15:42] 2025-10-11 22:15:41,888 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 18:15:42] 2025-10-11 22:15:41,888 | INFO     | [monitor] control thread has ended
[2025-10-11 18:15:42] 2025-10-11 22:15:41,986 [wrapper] ==== pilot stdout END ====
[2025-10-11 18:15:42] 2025-10-11 22:15:41,990 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 18:15:42] 2025-10-11 22:15:41,993 [wrapper] pilotpid: 28055
[2025-10-11 18:15:42] 2025-10-11 22:15:41,997 [wrapper] Pilot exit status: 0
[2025-10-11 18:15:42] 2025-10-11 22:15:42,010 [wrapper] pandaids: 6838292678
[2025-10-11 18:15:42] 2025-10-11 22:15:42,053 [wrapper] cleanup supervisor_pilot  2948 28056
[2025-10-11 18:15:42] 2025-10-11 22:15:42,057 [wrapper] Test setup, not cleaning
[2025-10-11 18:15:42] 2025-10-11 22:15:42,061 [wrapper] apfmon messages muted
[2025-10-11 18:15:42] 2025-10-11 22:15:42,065 [wrapper] ==== wrapper stdout END ====
[2025-10-11 18:15:42] 2025-10-11 22:15:42,069 [wrapper] ==== wrapper stderr END ====
[2025-10-11 18:15:42]  *** Error codes and diagnostics ***
[2025-10-11 18:15:42]     "exeErrorCode": 0,
[2025-10-11 18:15:42]     "exeErrorDiag": "",
[2025-10-11 18:15:42]     "pilotErrorCode": 0,
[2025-10-11 18:15:42]     "pilotErrorDiag": "",
[2025-10-11 18:15:42]  *** Listing of results directory ***
[2025-10-11 18:15:42] total 410720
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 05:03 pilot3.tar.gz
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 05:13 queuedata.json
[2025-10-11 18:15:42] -rwx------ 1 boincer umatlas     36292 Oct 11 05:16 runpilot2-wrapper.sh
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas       100 Oct 11 17:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 18:15:42] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 17:09 run_atlas
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas       105 Oct 11 17:09 job.xml
[2025-10-11 18:15:42] -rw-r--r-- 2 boincer umatlas 222385608 Oct 11 17:09 EVNT.46676267._002210.pool.root.1
[2025-10-11 18:15:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 17:09 start_atlas.sh
[2025-10-11 18:15:42] drwxrwx--x 2 boincer umatlas      4096 Oct 11 17:09 shared
[2025-10-11 18:15:42] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 17:09 input.tar.gz
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas         0 Oct 11 17:09 boinc_lockfile
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas      2549 Oct 11 17:09 pandaJob.out
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas    975528 Oct 11 17:09 agis_schedconf.cvmfs.json
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas   1560580 Oct 11 17:09 agis_ddmendpoints.agis.ALL.json
[2025-10-11 18:15:42] drwx------ 5 boincer umatlas      4096 Oct 11 17:09 pilot3
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas      6135 Oct 11 18:12 init_data.xml
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas 192469123 Oct 11 18:14 HITS.46676269._055117.pool.root.1
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas      1045 Oct 11 18:14 memory_monitor_summary.json
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas       529 Oct 11 18:14 boinc_task_state.xml
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas    317660 Oct 11 18:15 log.46676269._055117.job.log.tgz.1
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas      7832 Oct 11 18:15 heartbeat.json
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas        95 Oct 11 18:15 pilot_heartbeat.json
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 18:15 boinc_mmap_file
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas        27 Oct 11 18:15 wrapper_checkpoint.txt
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas       820 Oct 11 18:15 pilotlog.txt
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas    593404 Oct 11 18:15 log.46676269._055117.job.log.1
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas       357 Oct 11 18:15 output.list
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas       620 Oct 11 18:15 runtime_log
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas    931840 Oct 11 18:15 result.tar.gz
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas      8703 Oct 11 18:15 runtime_log.err
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas       657 Oct 11 18:15 HC1KDmCtkR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm7bRMDmIiGTin.diag
[2025-10-11 18:15:42] -rw-r--r-- 1 boincer umatlas     22109 Oct 11 18:15 stderr.txt
[2025-10-11 18:15:42] HITS file was successfully produced:
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas 192469123 Oct 11 18:14 shared/HITS.pool.root.1
[2025-10-11 18:15:42]  *** Contents of shared directory: ***
[2025-10-11 18:15:42] total 406628
[2025-10-11 18:15:42] -rw-r--r-- 2 boincer umatlas 222385608 Oct 11 17:09 ATLAS.root_0
[2025-10-11 18:15:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 17:09 start_atlas.sh
[2025-10-11 18:15:42] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 17:09 input.tar.gz
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas 192469123 Oct 11 18:14 HITS.pool.root.1
[2025-10-11 18:15:42] -rw------- 1 boincer umatlas    931840 Oct 11 18:15 result.tar.gz
18:15:43 (24344): run_atlas exited; CPU time 29294.801857
18:15:43 (24344): called boinc_finish(0)

</stderr_txt>
]]>

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