Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:50:28 (2899474): wrapper (7.7.26015): starting
07:50:28 (2899474): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 07:50:28] Arguments: --nthreads 3
[2025-10-12 07:50:28] Threads: 3
[2025-10-12 07:50:28] Checking for CVMFS
[2025-10-12 07:50:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:50:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:50:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:50:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:50:29] 2.9.2.0 1694695 3951 81452 151609 2 57 29859191 36864001 0 130560 0 3156441 99.991 133533 918 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 07:50:29] CVMFS is ok
[2025-10-12 07:50:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:50:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:50:29] Further information can be found at the LHC@home message board.
[2025-10-12 07:50:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:50:29] Checking for apptainer binary...
[2025-10-12 07:50:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:50:29] Running /usr/bin/apptainer --version
[2025-10-12 07:50:29] apptainer version 1.4.1-1.1
[2025-10-12 07:50:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:50:29] thA312a
[2025-10-12 07:50:29] apptainer works
[2025-10-12 07:50:29] Set ATHENA_PROC_NUMBER=3
[2025-10-12 07:50:29] Set ATHENA_CORE_NUMBER=3
[2025-10-12 07:50:29] Starting ATLAS job with PandaID=6838632105
[2025-10-12 07:50:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:09:46]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:09:46] 2025-10-12 07:09:04,585 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:09:46] 2025-10-12 07:09:04,585 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:09:46] 2025-10-12 07:09:04,585 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:09:46] 2025-10-12 07:09:04,585 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:09:46] 2025-10-12 07:09:04,585 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:09:46] 2025-10-12 07:09:04,585 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:09:46] 2025-10-12 07:09:04,585 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:09:46] 2025-10-12 07:09:04,585 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:09:46] 2025-10-12 07:09:04,585 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:09:46] 2025-10-12 07:09:04,585 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:09:46] 2025-10-12 07:09:04,585 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:09:46] 2025-10-12 07:09:04,586 | INFO     | job 6838632105 has completed (purged errors)
[2025-10-12 09:09:46] 2025-10-12 07:09:04,586 | INFO     | overall cleanup function is called
[2025-10-12 09:09:46] 2025-10-12 07:09:05,592 | INFO     | --- collectZombieJob: --- 10, [2909630]
[2025-10-12 09:09:46] 2025-10-12 07:09:05,592 | INFO     | zombie collector waiting for pid 2909630
[2025-10-12 09:09:46] 2025-10-12 07:09:05,592 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:09:46] 2025-10-12 07:09:05,592 | INFO     | collected zombie processes
[2025-10-12 09:09:46] 2025-10-12 07:09:05,592 | INFO     | will attempt to kill all subprocesses of pid=2909630
[2025-10-12 09:09:46] 2025-10-12 07:09:05,633 | INFO     | process IDs to be killed: [2909630] (in reverse order)
[2025-10-12 09:09:46] 2025-10-12 07:09:05,658 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:09:46] 2025-10-12 07:09:05,659 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:09:46] 2025-10-12 07:09:05,660 | INFO     | did not find any defunct processes belonging to 2909630
[2025-10-12 09:09:46] 2025-10-12 07:09:05,661 | INFO     | did not find any defunct processes belonging to 2909630
[2025-10-12 09:09:46] 2025-10-12 07:09:05,661 | INFO     | ready for new job
[2025-10-12 09:09:46] 2025-10-12 07:09:05,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:09:46] 2025-10-12 07:09:05,662 | INFO     | ***************************************
[2025-10-12 09:09:46] 2025-10-12 07:09:05,662 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:09:46] 2025-10-12 07:09:05,662 | INFO     | ***************************************
[2025-10-12 09:09:46] 2025-10-12 07:09:05,662 | INFO     | 
[2025-10-12 09:09:46] 2025-10-12 07:09:05,662 | INFO     | architecture information:
[2025-10-12 09:09:46] 2025-10-12 07:09:05,662 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:09:46] 2025-10-12 07:09:05,671 | INFO     | cat /etc/os-release:
[2025-10-12 09:09:46] NAME="CentOS Linux"
[2025-10-12 09:09:46] VERSION="7 (Core)"
[2025-10-12 09:09:46] ID="centos"
[2025-10-12 09:09:46] ID_LIKE="rhel fedora"
[2025-10-12 09:09:46] VERSION_ID="7"
[2025-10-12 09:09:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:09:46] ANSI_COLOR="0;31"
[2025-10-12 09:09:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:09:46] HOME_URL="https://www.centos.org/"
[2025-10-12 09:09:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:09:46] 
[2025-10-12 09:09:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:09:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:09:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:09:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:09:46] 
[2025-10-12 09:09:46] 2025-10-12 07:09:05,671 | INFO     | ***************************************
[2025-10-12 09:09:46] 2025-10-12 07:09:06,175 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 09:09:46] 2025-10-12 07:09:06,188 | INFO     | sufficient remaining disk space (274711183360 B)
[2025-10-12 09:09:46] 2025-10-12 07:09:06,188 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:09:46] 2025-10-12 07:09:06,188 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:09:46] 2025-10-12 07:09:06,188 | INFO     | update_server=False
[2025-10-12 09:09:46] 2025-10-12 07:09:06,188 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:09:46] 2025-10-12 07:09:06,188 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:09:46] 2025-10-12 07:09:06,409 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 09:09:46] 2025-10-12 07:09:06,410 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 09:09:46] 2025-10-12 07:09:06,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:09:46] 2025-10-12 07:09:06,410 | INFO     | will abort loop
[2025-10-12 09:09:46] 2025-10-12 07:09:06,628 | INFO     | all data control threads have been joined
[2025-10-12 09:09:46] 2025-10-12 07:09:06,638 | INFO     | all payload control threads have been joined
[2025-10-12 09:09:46] 2025-10-12 07:09:07,194 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:07,194 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:07,247 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:09:46] 2025-10-12 07:09:07,414 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:07,467 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:07,631 | INFO     | [data] control thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:07,642 | INFO     | [payload] control thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:07,819 | INFO     | all job control threads have been joined
[2025-10-12 09:09:46] 2025-10-12 07:09:07,906 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:08,348 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:08,595 | INFO     | [job] validate thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:08,639 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:08,677 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:08,679 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:08,825 | INFO     | [job] control thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:08,948 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:09:46] 2025-10-12 07:09:09,253 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:12,956 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:17,067 | INFO     | job.realtimelogging is not enabled
[2025-10-12 09:09:46] 2025-10-12 07:09:18,073 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:09:46] 2025-10-12 07:09:36,236 | INFO     | PID=2903194 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:09:46] 2025-10-12 07:09:36,236 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:09:46] 2025-10-12 07:09:36,236 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:09:46] 2025-10-12 07:09:36,236 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:09:46] 2025-10-12 07:09:40,205 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:09:46] 2025-10-12 07:09:41,588 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139713754605376)>', '<ExcThread(monitor, started 139712534673152)>']
[2025-10-12 09:09:46] 2025-10-12 07:09:42,269 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:09:46] 2025-10-12 07:09:42,269 | INFO     | [monitor] control thread has ended
[2025-10-12 09:09:46] 2025-10-12 07:09:46,614 | INFO     | all workflow threads have been joined
[2025-10-12 09:09:46] 2025-10-12 07:09:46,614 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:09:46] 2025-10-12 07:09:46,615 | INFO     | traces error code: 0
[2025-10-12 09:09:46] 2025-10-12 07:09:46,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:09:46] 2025-10-12 07:09:46,667 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:09:46] 2025-10-12 07:09:46,669 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:09:46] 2025-10-12 07:09:46,672 [wrapper] pilotpid: 2903194
[2025-10-12 09:09:46] 2025-10-12 07:09:46,674 [wrapper] Pilot exit status: 0
[2025-10-12 09:09:46] 2025-10-12 07:09:46,682 [wrapper] pandaids: 6838632105
[2025-10-12 09:09:46] 2025-10-12 07:09:46,699 [wrapper] cleanup supervisor_pilot 2921865 2903195
[2025-10-12 09:09:46] 2025-10-12 07:09:46,702 [wrapper] Test setup, not cleaning
[2025-10-12 09:09:46] 2025-10-12 07:09:46,704 [wrapper] apfmon messages muted
[2025-10-12 09:09:46] 2025-10-12 07:09:46,707 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:09:46] 2025-10-12 07:09:46,709 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:09:46]  *** Error codes and diagnostics ***
[2025-10-12 09:09:46]     "exeErrorCode": 0,
[2025-10-12 09:09:46]     "exeErrorDiag": "",
[2025-10-12 09:09:46]     "pilotErrorCode": 0,
[2025-10-12 09:09:46]     "pilotErrorDiag": "",
[2025-10-12 09:09:46]  *** Listing of results directory ***
[2025-10-12 09:09:46] total 407792
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc    557409 Oct 11 17:50 pilot3.tar.gz
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc      5112 Oct 11 18:06 queuedata.json
[2025-10-12 09:09:46] -rwx------ 1 boinc boinc     36292 Oct 11 18:06 runpilot2-wrapper.sh
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc       100 Oct 12 07:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:09:46] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 07:50 run_atlas
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc       105 Oct 12 07:50 job.xml
[2025-10-12 09:09:46] -rw-r--r-- 2 boinc boinc 222315236 Oct 12 07:50 EVNT.46676267._002434.pool.root.1
[2025-10-12 09:09:46] -rw-r--r-- 2 boinc boinc    569678 Oct 12 07:50 input.tar.gz
[2025-10-12 09:09:46] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:50 start_atlas.sh
[2025-10-12 09:09:46] drwxrwx--x 2 boinc boinc      4096 Oct 12 07:50 shared
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:50 boinc_setup_complete
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc      6447 Oct 12 07:50 init_data.xml
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:50 boinc_lockfile
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc      2550 Oct 12 07:50 pandaJob.out
[2025-10-12 09:09:46] -rw------- 1 boinc boinc    975528 Oct 12 07:50 agis_schedconf.cvmfs.json
[2025-10-12 09:09:46] -rw------- 1 boinc boinc   1560580 Oct 12 07:50 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:09:46] drwx------ 5 boinc boinc      4096 Oct 12 07:50 pilot3
[2025-10-12 09:09:46] -rw------- 1 boinc boinc 189478532 Oct 12 09:08 HITS.46676269._060635.pool.root.1
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc       529 Oct 12 09:08 boinc_task_state.xml
[2025-10-12 09:09:46] -rw------- 1 boinc boinc      1017 Oct 12 09:08 memory_monitor_summary.json
[2025-10-12 09:09:46] -rw------- 1 boinc boinc    251122 Oct 12 09:08 log.46676269._060635.job.log.tgz.1
[2025-10-12 09:09:46] -rw------- 1 boinc boinc        95 Oct 12 09:08 pilot_heartbeat.json
[2025-10-12 09:09:46] -rw------- 1 boinc boinc      7747 Oct 12 09:09 heartbeat.json
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc      8192 Oct 12 09:09 boinc_mmap_file
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc        27 Oct 12 09:09 wrapper_checkpoint.txt
[2025-10-12 09:09:46] -rw------- 1 boinc boinc      5010 Oct 12 09:09 pilotlog.txt
[2025-10-12 09:09:46] -rw------- 1 boinc boinc    695136 Oct 12 09:09 log.46676269._060635.job.log.1
[2025-10-12 09:09:46] -rw------- 1 boinc boinc       357 Oct 12 09:09 output.list
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc       620 Oct 12 09:09 runtime_log
[2025-10-12 09:09:46] -rw------- 1 boinc boinc    962560 Oct 12 09:09 result.tar.gz
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc      8782 Oct 12 09:09 runtime_log.err
[2025-10-12 09:09:46] -rw------- 1 boinc boinc       659 Oct 12 09:09 l5kNDmQIrR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvrgNDmuE4p0n.diag
[2025-10-12 09:09:46] -rw-r--r-- 1 boinc boinc     12258 Oct 12 09:09 stderr.txt
[2025-10-12 09:09:46] HITS file was successfully produced:
[2025-10-12 09:09:46] -rw------- 1 boinc boinc 189478532 Oct 12 09:08 shared/HITS.pool.root.1
[2025-10-12 09:09:46]  *** Contents of shared directory: ***
[2025-10-12 09:09:46] total 403672
[2025-10-12 09:09:46] -rw-r--r-- 2 boinc boinc 222315236 Oct 12 07:50 ATLAS.root_0
[2025-10-12 09:09:46] -rw-r--r-- 2 boinc boinc    569678 Oct 12 07:50 input.tar.gz
[2025-10-12 09:09:46] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:50 start_atlas.sh
[2025-10-12 09:09:46] -rw------- 1 boinc boinc 189478532 Oct 12 09:08 HITS.pool.root.1
[2025-10-12 09:09:46] -rw------- 1 boinc boinc    962560 Oct 12 09:09 result.tar.gz
09:09:47 (2899474): run_atlas exited; CPU time 13509.893079
09:09:47 (2899474): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN