Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:41:46 (928829): wrapper (7.7.26015): starting
17:41:46 (928829): wrapper: running run_atlas (--nthreads 9)
[2025-10-11 17:41:46] Arguments: --nthreads 9
[2025-10-11 17:41:46] Threads: 9
[2025-10-11 17:41:46] Checking for CVMFS
[2025-10-11 17:41:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 17:41:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 17:41:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 17:42:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 17:42:08] 2.13.2.0 558603 128376 491784 151597 1 302 32279530 32935936 44934 16776704 0 246897507 99.609 245230313 19981 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 17:42:08] CVMFS is ok
[2025-10-11 17:42:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 17:42:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 17:42:08] Further information can be found at the LHC@home message board.
[2025-10-11 17:42:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 17:42:08] Checking for apptainer binary...
[2025-10-11 17:42:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 17:42:08] Running /usr/bin/apptainer --version
[2025-10-11 17:42:08] apptainer version 1.4.3-1.el9
[2025-10-11 17:42:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 17:42:09] c6-6-8-3.aglt2.org
[2025-10-11 17:42:09] apptainer works
[2025-10-11 17:42:09] Set ATHENA_PROC_NUMBER=9
[2025-10-11 17:42:09] Set ATHENA_CORE_NUMBER=9
[2025-10-11 17:42:09] Starting ATLAS job with PandaID=6838631651
[2025-10-11 17:42:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 21:43:09]  *** The last 200 lines of the pilot log: ***
[2025-10-11 21:43:09] 2025-10-12 01:42:14,494 | INFO     | sum of square deviations: 3871944318.0689588
[2025-10-11 21:43:09] 2025-10-12 01:42:14,496 | INFO     | sum of deviations: 16581876492.31035
[2025-10-11 21:43:09] 2025-10-12 01:42:14,496 | INFO     | mean x: 1760226229.7931035
[2025-10-11 21:43:09] 2025-10-12 01:42:14,496 | INFO     | mean y: 2136075.5689655175
[2025-10-11 21:43:09] 2025-10-12 01:42:14,496 | INFO     | -- intersect: -7536157748.736622
[2025-10-11 21:43:09] 2025-10-12 01:42:14,496 | INFO     | intersect: -7536157748.736622
[2025-10-11 21:43:09] 2025-10-12 01:42:14,497 | INFO     | chi2: 4.148233262090913
[2025-10-11 21:43:09] 2025-10-12 01:42:14,497 | INFO     | sum of square deviations: 3626974417.6299543
[2025-10-11 21:43:09] 2025-10-12 01:42:14,543 | INFO     | sum of deviations: 44306113983.9075
[2025-10-11 21:43:09] 2025-10-12 01:42:14,543 | INFO     | mean x: 1760226077.2995594
[2025-10-11 21:43:09] 2025-10-12 01:42:14,543 | INFO     | mean y: 2153146.074889868
[2025-10-11 21:43:09] 2025-10-12 01:42:14,543 | INFO     | -- intersect: -21500280628.807484
[2025-10-11 21:43:09] 2025-10-12 01:42:14,544 | INFO     | intersect: -21500280628.807484
[2025-10-11 21:43:09] 2025-10-12 01:42:14,544 | INFO     | chi2: 2.745492650234118
[2025-10-11 21:43:09] 2025-10-12 01:42:14,544 | INFO     | current chi2=2.745492650234118 (change=33.81537447944151 %)
[2025-10-11 21:43:09] 2025-10-12 01:42:14,544 | INFO     | sum of square deviations: 3392562854.6711774
[2025-10-11 21:43:09] 2025-10-12 01:42:14,555 | INFO     | sum of deviations: 46302206273.29729
[2025-10-11 21:43:09] 2025-10-12 01:42:14,555 | INFO     | mean x: 1760225924.8063064
[2025-10-11 21:43:09] 2025-10-12 01:42:14,555 | INFO     | mean y: 2154422.2162162163
[2025-10-11 21:43:09] 2025-10-12 01:42:14,555 | INFO     | -- intersect: -24021672799.073883
[2025-10-11 21:43:09] 2025-10-12 01:42:14,556 | INFO     | intersect: -24021672799.073883
[2025-10-11 21:43:09] 2025-10-12 01:42:14,556 | INFO     | chi2: 2.7307598340007115
[2025-10-11 21:43:09] 2025-10-12 01:42:14,556 | INFO     | current chi2=2.7307598340007115 (change=0.5366183090000364 %)
[2025-10-11 21:43:09] 2025-10-12 01:42:14,556 | INFO     | right removable region: 221
[2025-10-11 21:43:09] 2025-10-12 01:42:14,557 | INFO     | sum of square deviations: 3626932937.6299543
[2025-10-11 21:43:09] 2025-10-12 01:42:14,572 | INFO     | sum of deviations: -28518853472.18502
[2025-10-11 21:43:09] 2025-10-12 01:42:14,572 | INFO     | mean x: 1760226382.2995594
[2025-10-11 21:43:09] 2025-10-12 01:42:14,573 | INFO     | mean y: 2163999.1497797356
[2025-10-11 21:43:09] 2025-10-12 01:42:14,573 | INFO     | -- intersect: 13842959828.002018
[2025-10-11 21:43:09] 2025-10-12 01:42:14,573 | INFO     | intersect: 13842959828.002018
[2025-10-11 21:43:09] 2025-10-12 01:42:14,573 | INFO     | chi2: 1.9181452415474973
[2025-10-11 21:43:09] 2025-10-12 01:42:14,573 | INFO     | current chi2=1.9181452415474973 (change=53.759947419623686 %)
[2025-10-11 21:43:09] 2025-10-12 01:42:14,574 | INFO     | sum of square deviations: 3392521434.4684806
[2025-10-11 21:43:09] 2025-10-12 01:42:14,592 | INFO     | sum of deviations: -41977384330.62163
[2025-10-11 21:43:09] 2025-10-12 01:42:14,592 | INFO     | mean x: 1760226534.7927928
[2025-10-11 21:43:09] 2025-10-12 01:42:14,592 | INFO     | mean y: 2172717.4864864866
[2025-10-11 21:43:09] 2025-10-12 01:42:14,592 | INFO     | -- intersect: 21782346310.26792
[2025-10-11 21:43:09] 2025-10-12 01:42:14,592 | INFO     | intersect: 21782346310.26792
[2025-10-11 21:43:09] 2025-10-12 01:42:14,593 | INFO     | chi2: 1.7026320319108887
[2025-10-11 21:43:09] 2025-10-12 01:42:14,593 | INFO     | current chi2=1.7026320319108887 (change=11.235500053308764 %)
[2025-10-11 21:43:09] 2025-10-12 01:42:14,593 | INFO     | left removable region: 20
[2025-10-11 21:43:09] 2025-10-12 01:42:14,593 | INFO     | sum of square deviations: 2518022105.263681
[2025-10-11 21:43:09] 2025-10-12 01:42:14,595 | INFO     | sum of deviations: 4332598562.452736
[2025-10-11 21:43:09] 2025-10-12 01:42:14,595 | INFO     | mean x: 1760226504.2885573
[2025-10-11 21:43:09] 2025-10-12 01:42:14,595 | INFO     | mean y: 2182268.457711443
[2025-10-11 21:43:09] 2025-10-12 01:42:14,644 | INFO     | -- intersect: -3026526179.386989
[2025-10-11 21:43:09] 2025-10-12 01:42:14,644 | INFO     | intersect: -3026526179.386989
[2025-10-11 21:43:09] 2025-10-12 01:42:14,645 | INFO     | chi2: 0.10917583364982059
[2025-10-11 21:43:09] 2025-10-12 01:42:14,645 | INFO     | -- intersect: -3026526179.386989
[2025-10-11 21:43:09] 2025-10-12 01:42:14,645 | INFO     | current memory leak: 1.72 B/s (using 201 data points, chi2=0.11)
[2025-10-11 21:43:09] 2025-10-12 01:42:14,646 | INFO     | could have reported an average CPU frequency of 2672 MHz (11 samples)
[2025-10-11 21:43:09] 2025-10-12 01:42:14,646 | INFO     | ..............................
[2025-10-11 21:43:09] 2025-10-12 01:42:14,646 | INFO     | . Timing measurements:
[2025-10-11 21:43:09] 2025-10-12 01:42:14,646 | INFO     | . get job = 0 s
[2025-10-11 21:43:09] 2025-10-12 01:42:14,646 | INFO     | . initial setup = 7 s
[2025-10-11 21:43:09] 2025-10-12 01:42:14,646 | INFO     | . payload setup = 48 s
[2025-10-11 21:43:09] 2025-10-12 01:42:14,646 | INFO     | . stage-in = 0 s
[2025-10-11 21:43:09] 2025-10-12 01:42:14,646 | INFO     | . payload execution = 14125 s
[2025-10-11 21:43:09] 2025-10-12 01:42:14,646 | INFO     | . stage-out = 10 s
[2025-10-11 21:43:09] 2025-10-12 01:42:14,646 | INFO     | . log creation = 1 s
[2025-10-11 21:43:09] 2025-10-12 01:42:14,646 | INFO     | ..............................
[2025-10-11 21:43:09] 2025-10-12 01:42:14,735 | INFO     | time since job start (14318s) is within the limit (172800.0s)
[2025-10-11 21:43:09] 2025-10-12 01:42:14,735 | INFO     | 14326s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-11 21:43:09] 2025-10-12 01:42:15,267 | INFO     | 
[2025-10-11 21:43:09] 2025-10-12 01:42:15,267 | INFO     | job summary report
[2025-10-11 21:43:09] 2025-10-12 01:42:15,267 | INFO     | --------------------------------------------------
[2025-10-11 21:43:09] 2025-10-12 01:42:15,267 | INFO     | PanDA job id: 6838631651
[2025-10-11 21:43:09] 2025-10-12 01:42:15,267 | INFO     | task id: 46676269
[2025-10-11 21:43:09] 2025-10-12 01:42:15,267 | INFO     | errors: (none)
[2025-10-11 21:43:09] 2025-10-12 01:42:15,267 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 21:43:09] 2025-10-12 01:42:15,267 | INFO     | pilot state: finished 
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | transexitcode: 0
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | exeerrorcode: 0
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | exeerrordiag: 
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | exitcode: 0
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | exitmsg: OK
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | cpuconsumptiontime: 43095 s
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | nevents: 400
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | neventsw: 0
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | pid: 957712
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | pgrp: 957712
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | corecount: 9
[2025-10-11 21:43:09] 2025-10-12 01:42:15,268 | INFO     | event service: False
[2025-10-11 21:43:09] 2025-10-12 01:42:15,269 | INFO     | sizes: {0: 2348630, 1: 2348714, 2: 2348913, 3: 2348913, 14: 2348941, 26: 2348969, 37: 2349125, 40: 2349415, 48: 2349443, 14179: 2379674, 14190: 2388672, 14191: 238
[2025-10-11 21:43:09] 2025-10-12 01:42:15,269 | INFO     | --------------------------------------------------
[2025-10-11 21:43:09] 2025-10-12 01:42:15,269 | INFO     | 
[2025-10-11 21:43:09] 2025-10-12 01:42:15,269 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 21:43:09] 2025-10-12 01:42:15,359 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,360 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,360 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,360 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,360 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,360 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,360 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,360 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,360 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,360 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,361 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,361 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,361 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,361 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,361 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,361 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,361 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,361 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 21:43:09] 2025-10-12 01:42:15,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,361 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 21:43:09] 2025-10-12 01:42:15,361 | INFO     | job 6838631651 has completed (purged errors)
[2025-10-11 21:43:09] 2025-10-12 01:42:15,362 | INFO     | overall cleanup function is called
[2025-10-11 21:43:09] 2025-10-12 01:42:16,409 | INFO     | --- collectZombieJob: --- 10, [957712]
[2025-10-11 21:43:09] 2025-10-12 01:42:16,409 | INFO     | zombie collector waiting for pid 957712
[2025-10-11 21:43:09] 2025-10-12 01:42:16,409 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 21:43:09] 2025-10-12 01:42:16,409 | INFO     | collected zombie processes
[2025-10-11 21:43:09] 2025-10-12 01:42:16,409 | INFO     | will attempt to kill all subprocesses of pid=957712
[2025-10-11 21:43:09] 2025-10-12 01:42:23,742 | INFO     | PID=937243 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 21:43:09] 2025-10-12 01:42:23,742 | INFO     | .. there are 52 such processes running
[2025-10-11 21:43:09] 2025-10-12 01:42:23,863 | INFO     | process IDs to be killed: [957712] (in reverse order)
[2025-10-11 21:43:09] 2025-10-12 01:42:24,385 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 21:43:09] 2025-10-12 01:42:24,385 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 21:43:09] 2025-10-12 01:42:24,426 | INFO     | did not find any defunct processes belonging to 957712
[2025-10-11 21:43:09] 2025-10-12 01:42:24,474 | INFO     | did not find any defunct processes belonging to 957712
[2025-10-11 21:43:09] 2025-10-12 01:42:24,479 | INFO     | ready for new job
[2025-10-11 21:43:09] 2025-10-12 01:42:24,479 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 21:43:09] 2025-10-12 01:42:24,481 | INFO     | ***************************************
[2025-10-11 21:43:09] 2025-10-12 01:42:24,481 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 21:43:09] 2025-10-12 01:42:24,481 | INFO     | ***************************************
[2025-10-11 21:43:09] 2025-10-12 01:42:24,481 | INFO     | 
[2025-10-11 21:43:09] 2025-10-12 01:42:24,527 | INFO     | architecture information:
[2025-10-11 21:43:09] 2025-10-12 01:42:24,532 | INFO     | executing command: cat /etc/os-release
[2025-10-11 21:43:09] 2025-10-12 01:42:24,616 | INFO     | cat /etc/os-release:
[2025-10-11 21:43:09] NAME="CentOS Linux"
[2025-10-11 21:43:09] VERSION="7 (Core)"
[2025-10-11 21:43:09] ID="centos"
[2025-10-11 21:43:09] ID_LIKE="rhel fedora"
[2025-10-11 21:43:09] VERSION_ID="7"
[2025-10-11 21:43:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 21:43:09] ANSI_COLOR="0;31"
[2025-10-11 21:43:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 21:43:09] HOME_URL="https://www.centos.org/"
[2025-10-11 21:43:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 21:43:09] 
[2025-10-11 21:43:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 21:43:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 21:43:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 21:43:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 21:43:09] 
[2025-10-11 21:43:09] 2025-10-12 01:42:24,616 | INFO     | ***************************************
[2025-10-11 21:43:09] 2025-10-12 01:42:25,120 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 21:43:09] 2025-10-12 01:42:25,206 | INFO     | sufficient remaining disk space (94212456448 B)
[2025-10-11 21:43:09] 2025-10-12 01:42:25,206 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 21:43:09] 2025-10-12 01:42:25,207 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 21:43:09] 2025-10-12 01:42:25,207 | INFO     | update_server=False
[2025-10-11 21:43:09] 2025-10-12 01:42:25,207 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 21:43:09] 2025-10-12 01:42:25,208 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:43:09] 2025-10-12 01:42:25,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 21:43:09] 2025-10-12 01:42:25,332 | INFO     | all job control threads have been joined
[2025-10-11 21:43:09] 2025-10-12 01:42:25,717 | INFO     | all data control threads have been joined
[2025-10-11 21:43:09] 2025-10-12 01:42:25,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:43:09] 2025-10-12 01:42:25,774 | INFO     | aborting loop
[2025-10-11 21:43:09] 2025-10-12 01:42:26,213 | INFO     | [job] retrieve thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:26,215 | INFO     | [job] queue monitor thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:26,318 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 21:43:09] 2025-10-12 01:42:26,318 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:26,340 | INFO     | [job] control thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:26,432 | INFO     | all payload control threads have been joined
[2025-10-11 21:43:09] 2025-10-12 01:42:26,606 | INFO     | [payload] validate_post thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:26,613 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:26,627 | INFO     | [data] copytool_in thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:26,723 | INFO     | [data] control thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:26,740 | INFO     | [job] validate thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:26,789 | INFO     | [job] job monitor thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:27,021 | INFO     | [payload] failed_post thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:27,254 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:27,265 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:27,294 | INFO     | [data] copytool_out thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:27,438 | INFO     | [payload] control thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:42:30,328 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 21:43:09] 2025-10-12 01:43:01,069 | INFO     | PID=937243 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 21:43:09] 2025-10-12 01:43:01,069 | INFO     | .. there are 52 such processes running
[2025-10-11 21:43:09] 2025-10-12 01:43:01,070 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 21:43:09] 2025-10-12 01:43:01,070 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 21:43:09] 2025-10-12 01:43:01,070 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 21:43:09] 2025-10-12 01:43:01,479 | INFO     | [monitor] cgroup control has ended
[2025-10-11 21:43:09] 2025-10-12 01:43:01,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139907305060160)>', '<ExcThread(monitor, started 139906814834432)>']
[2025-10-11 21:43:09] 2025-10-12 01:43:02,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 21:43:09] 2025-10-12 01:43:02,076 | INFO     | [monitor] control thread has ended
[2025-10-11 21:43:09] 2025-10-12 01:43:06,650 | INFO     | all workflow threads have been joined
[2025-10-11 21:43:09] 2025-10-12 01:43:06,650 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 21:43:09] 2025-10-12 01:43:06,650 | INFO     | traces error code: 0
[2025-10-11 21:43:09] 2025-10-12 01:43:06,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 21:43:09] 2025-10-12 01:43:07,841 [wrapper] ==== pilot stdout END ====
[2025-10-11 21:43:09] 2025-10-12 01:43:07,881 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 21:43:09] 2025-10-12 01:43:07,900 [wrapper] pilotpid: 937243
[2025-10-11 21:43:09] 2025-10-12 01:43:07,915 [wrapper] Pilot exit status: 0
[2025-10-11 21:43:09] 2025-10-12 01:43:07,998 [wrapper] pandaids: 6838631651
[2025-10-11 21:43:09] 2025-10-12 01:43:08,331 [wrapper] cleanup supervisor_pilot 1737935 937244
[2025-10-11 21:43:09] 2025-10-12 01:43:08,334 [wrapper] Test setup, not cleaning
[2025-10-11 21:43:09] 2025-10-12 01:43:08,362 [wrapper] apfmon messages muted
[2025-10-11 21:43:09] 2025-10-12 01:43:08,404 [wrapper] ==== wrapper stdout END ====
[2025-10-11 21:43:09] 2025-10-12 01:43:08,480 [wrapper] ==== wrapper stderr END ====
[2025-10-11 21:43:09]  *** Error codes and diagnostics ***
[2025-10-11 21:43:09]     "exeErrorCode": 0,
[2025-10-11 21:43:09]     "exeErrorDiag": "",
[2025-10-11 21:43:09]     "pilotErrorCode": 0,
[2025-10-11 21:43:09]     "pilotErrorDiag": "",
[2025-10-11 21:43:09]  *** Listing of results directory ***
[2025-10-11 21:43:09] total 418972
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 11:50 pilot3.tar.gz
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 11:59 queuedata.json
[2025-10-11 21:43:09] -rwx------. 1 boincer umatlas     36292 Oct 11 11:59 runpilot2-wrapper.sh
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas       100 Oct 11 17:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 21:43:09] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 17:41 run_atlas
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas       105 Oct 11 17:41 job.xml
[2025-10-11 21:43:09] -rw-r--r--. 2 boincer umatlas 220268157 Oct 11 17:41 EVNT.46676267._002427.pool.root.1
[2025-10-11 21:43:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 17:41 start_atlas.sh
[2025-10-11 21:43:09] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 17:41 shared
[2025-10-11 21:43:09] -rw-r--r--. 2 boincer umatlas    569676 Oct 11 17:41 input.tar.gz
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas         0 Oct 11 17:41 boinc_lockfile
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 17:42 pandaJob.out
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas    975528 Oct 11 17:43 agis_schedconf.cvmfs.json
[2025-10-11 21:43:09] drwx------. 5 boincer umatlas      4096 Oct 11 17:43 pilot3
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas      6859 Oct 11 21:38 init_data.xml
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas 200489212 Oct 11 21:39 HITS.46676269._060456.pool.root.1
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas       531 Oct 11 21:39 boinc_task_state.xml
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas      1045 Oct 11 21:41 memory_monitor_summary.json
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas   1560580 Oct 11 21:41 agis_ddmendpoints.agis.ALL.json
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas    461748 Oct 11 21:41 log.46676269._060456.job.log.tgz.1
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas      7831 Oct 11 21:42 heartbeat.json
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas        95 Oct 11 21:43 pilot_heartbeat.json
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas      4823 Oct 11 21:43 pilotlog.txt
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas   1728677 Oct 11 21:43 log.46676269._060456.job.log.1
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 21:43 boinc_mmap_file
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas       357 Oct 11 21:43 output.list
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas       620 Oct 11 21:43 runtime_log
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas   2211840 Oct 11 21:43 result.tar.gz
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas        28 Oct 11 21:43 wrapper_checkpoint.txt
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas      8704 Oct 11 21:43 runtime_log.err
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas       655 Oct 11 21:43 LZQLDmQBrR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgpgNDmaRS4sn.diag
[2025-10-11 21:43:09] -rw-r--r--. 1 boincer umatlas      2144 Oct 11 21:43 stderr.txt
[2025-10-11 21:43:09] HITS file was successfully produced:
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas 200489212 Oct 11 21:39 shared/HITS.pool.root.1
[2025-10-11 21:43:09]  *** Contents of shared directory: ***
[2025-10-11 21:43:09] total 413644
[2025-10-11 21:43:09] -rw-r--r--. 2 boincer umatlas 220268157 Oct 11 17:41 ATLAS.root_0
[2025-10-11 21:43:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 17:41 start_atlas.sh
[2025-10-11 21:43:09] -rw-r--r--. 2 boincer umatlas    569676 Oct 11 17:41 input.tar.gz
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas 200489212 Oct 11 21:39 HITS.pool.root.1
[2025-10-11 21:43:09] -rw-------. 1 boincer umatlas   2211840 Oct 11 21:43 result.tar.gz
21:43:31 (928829): run_atlas exited; CPU time 43783.163095
21:43:31 (928829): called boinc_finish(0)

</stderr_txt>
]]>

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