Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:02:54 (2127924): wrapper (7.7.26015): starting
08:02:54 (2127924): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 08:02:54] Arguments: --nthreads 2
[2025-10-12 08:02:54] Threads: 2
[2025-10-12 08:02:54] Checking for CVMFS
[2025-10-12 08:02:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:02:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:02:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:02:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:02:55] 2.9.2.0 1210534 3929 59720 151609 1 57 28068084 36864001 0 130560 0 2415988 99.989 130337 905 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 08:02:55] CVMFS is ok
[2025-10-12 08:02:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:02:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 08:02:55] Further information can be found at the LHC@home message board.
[2025-10-12 08:02:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:02:55] Checking for apptainer binary...
[2025-10-12 08:02:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:02:55] Running /usr/bin/apptainer --version
[2025-10-12 08:02:55] apptainer version 1.4.1-1.1
[2025-10-12 08:02:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:02:55] thA369
[2025-10-12 08:02:55] apptainer works
[2025-10-12 08:02:55] Set ATHENA_PROC_NUMBER=2
[2025-10-12 08:02:55] Set ATHENA_CORE_NUMBER=2
[2025-10-12 08:02:55] Starting ATLAS job with PandaID=6838365138
[2025-10-12 08:02:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:05:23]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:05:23] 2025-10-12 08:04:34,025 | INFO     | 
[2025-10-12 10:05:23] 2025-10-12 08:04:34,025 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:05:23] 2025-10-12 08:04:34,036 | INFO     | job 6838365138 has completed (purged errors)
[2025-10-12 10:05:23] 2025-10-12 08:04:34,037 | INFO     | overall cleanup function is called
[2025-10-12 10:05:23] 2025-10-12 08:04:35,043 | INFO     | --- collectZombieJob: --- 10, [2138049]
[2025-10-12 10:05:23] 2025-10-12 08:04:35,043 | INFO     | zombie collector waiting for pid 2138049
[2025-10-12 10:05:23] 2025-10-12 08:04:35,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:05:23] 2025-10-12 08:04:35,044 | INFO     | collected zombie processes
[2025-10-12 10:05:23] 2025-10-12 08:04:35,044 | INFO     | will attempt to kill all subprocesses of pid=2138049
[2025-10-12 10:05:23] 2025-10-12 08:04:35,078 | INFO     | process IDs to be killed: [2138049] (in reverse order)
[2025-10-12 10:05:23] 2025-10-12 08:04:35,098 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:05:23] 2025-10-12 08:04:35,098 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:05:23] 2025-10-12 08:04:35,099 | INFO     | did not find any defunct processes belonging to 2138049
[2025-10-12 10:05:23] 2025-10-12 08:04:35,100 | INFO     | did not find any defunct processes belonging to 2138049
[2025-10-12 10:05:23] 2025-10-12 08:04:35,100 | INFO     | ready for new job
[2025-10-12 10:05:23] 2025-10-12 08:04:35,100 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:05:23] 2025-10-12 08:04:35,100 | INFO     | ***************************************
[2025-10-12 10:05:23] 2025-10-12 08:04:35,100 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:05:23] 2025-10-12 08:04:35,100 | INFO     | ***************************************
[2025-10-12 10:05:23] 2025-10-12 08:04:35,100 | INFO     | 
[2025-10-12 10:05:23] 2025-10-12 08:04:35,101 | INFO     | architecture information:
[2025-10-12 10:05:23] 2025-10-12 08:04:35,101 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:05:23] 2025-10-12 08:04:35,109 | INFO     | cat /etc/os-release:
[2025-10-12 10:05:23] NAME="CentOS Linux"
[2025-10-12 10:05:23] VERSION="7 (Core)"
[2025-10-12 10:05:23] ID="centos"
[2025-10-12 10:05:23] ID_LIKE="rhel fedora"
[2025-10-12 10:05:23] VERSION_ID="7"
[2025-10-12 10:05:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:05:23] ANSI_COLOR="0;31"
[2025-10-12 10:05:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:05:23] HOME_URL="https://www.centos.org/"
[2025-10-12 10:05:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:05:23] 
[2025-10-12 10:05:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:05:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:05:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:05:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:05:23] 
[2025-10-12 10:05:23] 2025-10-12 08:04:35,109 | INFO     | ***************************************
[2025-10-12 10:05:23] 2025-10-12 08:04:35,612 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 10:05:23] 2025-10-12 08:04:35,641 | INFO     | sufficient remaining disk space (332444729344 B)
[2025-10-12 10:05:23] 2025-10-12 08:04:35,642 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:05:23] 2025-10-12 08:04:35,642 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:05:23] 2025-10-12 08:04:35,642 | INFO     | update_server=False
[2025-10-12 10:05:23] 2025-10-12 08:04:35,642 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:05:23] 2025-10-12 08:04:35,643 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 10:05:23] 2025-10-12 08:04:35,643 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:05:23] 2025-10-12 08:04:35,644 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:05:23] 2025-10-12 08:04:35,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:05:23] 2025-10-12 08:04:35,644 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:05:23] 2025-10-12 08:04:35,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:05:23] 2025-10-12 08:04:35,645 | INFO     | aborting loop
[2025-10-12 10:05:23] 2025-10-12 08:04:35,979 | INFO     | all job control threads have been joined
[2025-10-12 10:05:23] 2025-10-12 08:04:36,149 | INFO     | all data control threads have been joined
[2025-10-12 10:05:23] 2025-10-12 08:04:36,516 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:05:23] 2025-10-12 08:04:36,648 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:36,650 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:36,651 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:36,701 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:05:23] 2025-10-12 08:04:36,798 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:36,984 | INFO     | all payload control threads have been joined
[2025-10-12 10:05:23] 2025-10-12 08:04:36,985 | INFO     | [job] control thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:37,047 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:37,071 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:37,108 | INFO     | [job] validate thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:37,155 | INFO     | [data] control thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:37,266 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:37,468 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:37,990 | INFO     | [payload] control thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:38,032 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:38,707 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:40,523 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:04:45,745 | INFO     | job.realtimelogging is not enabled
[2025-10-12 10:05:23] 2025-10-12 08:04:46,751 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:05:23] 2025-10-12 08:05:16,878 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:05:23] 2025-10-12 08:05:17,940 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139748812363584)>', '<ExcThread(monitor, started 139748102371072)>']
[2025-10-12 10:05:23] 2025-10-12 08:05:18,856 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:05:23] 2025-10-12 08:05:18,857 | INFO     | [monitor] control thread has ended
[2025-10-12 10:05:23] 2025-10-12 08:05:22,966 | INFO     | all workflow threads have been joined
[2025-10-12 10:05:23] 2025-10-12 08:05:22,966 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:05:23] 2025-10-12 08:05:22,967 | INFO     | traces error code: 0
[2025-10-12 10:05:23] 2025-10-12 08:05:22,967 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:05:23] 2025-10-12 08:05:23,009 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:05:23] 2025-10-12 08:05:23,012 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:05:23] 2025-10-12 08:05:23,014 [wrapper] pilotpid: 2131636
[2025-10-12 10:05:23] 2025-10-12 08:05:23,016 [wrapper] Pilot exit status: 0
[2025-10-12 10:05:23] 2025-10-12 08:05:23,022 [wrapper] pandaids: 6838365138
[2025-10-12 10:05:23] 2025-10-12 08:05:23,036 [wrapper] cleanup supervisor_pilot 2152148 2131637
[2025-10-12 10:05:23] 2025-10-12 08:05:23,038 [wrapper] Test setup, not cleaning
[2025-10-12 10:05:23] 2025-10-12 08:05:23,040 [wrapper] apfmon messages muted
[2025-10-12 10:05:23] 2025-10-12 08:05:23,042 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:05:23] 2025-10-12 08:05:23,044 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:05:23]  *** Error codes and diagnostics ***
[2025-10-12 10:05:23]     "exeErrorCode": 0,
[2025-10-12 10:05:23]     "exeErrorDiag": "",
[2025-10-12 10:05:23]     "pilotErrorCode": 0,
[2025-10-12 10:05:23]     "pilotErrorDiag": "",
[2025-10-12 10:05:23]  *** Listing of results directory ***
[2025-10-12 10:05:23] total 415464
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc      5112 Oct 11 13:18 queuedata.json
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc    557409 Oct 11 13:21 pilot3.tar.gz
[2025-10-12 10:05:23] -rwx------ 1 boinc boinc     36292 Oct 11 13:23 runpilot2-wrapper.sh
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc       100 Oct 12 08:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:05:23] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 08:02 run_atlas
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc       105 Oct 12 08:02 job.xml
[2025-10-12 10:05:23] -rw-r--r-- 2 boinc boinc 224137338 Oct 12 08:02 EVNT.46676267._002271.pool.root.1
[2025-10-12 10:05:23] -rw-r--r-- 2 boinc boinc    569680 Oct 12 08:02 input.tar.gz
[2025-10-12 10:05:23] -rw-r--r-- 2 boinc boinc     15120 Oct 12 08:02 start_atlas.sh
[2025-10-12 10:05:23] drwxrwx--x 2 boinc boinc      4096 Oct 12 08:02 shared
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc         0 Oct 12 08:02 boinc_setup_complete
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc      6206 Oct 12 08:02 init_data.xml
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc         0 Oct 12 08:02 boinc_lockfile
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc      2550 Oct 12 08:02 pandaJob.out
[2025-10-12 10:05:23] -rw------- 1 boinc boinc    975528 Oct 12 08:03 agis_schedconf.cvmfs.json
[2025-10-12 10:05:23] -rw------- 1 boinc boinc   1560580 Oct 12 08:03 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:05:23] drwx------ 5 boinc boinc      4096 Oct 12 08:03 pilot3
[2025-10-12 10:05:23] -rw------- 1 boinc boinc        95 Oct 12 10:03 pilot_heartbeat.json
[2025-10-12 10:05:23] -rw------- 1 boinc boinc 194752365 Oct 12 10:04 HITS.46676269._056670.pool.root.1
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc       530 Oct 12 10:04 boinc_task_state.xml
[2025-10-12 10:05:23] -rw------- 1 boinc boinc      1017 Oct 12 10:04 memory_monitor_summary.json
[2025-10-12 10:05:23] -rw------- 1 boinc boinc    272592 Oct 12 10:04 log.46676269._056670.job.log.tgz.1
[2025-10-12 10:05:23] -rw------- 1 boinc boinc      7752 Oct 12 10:04 heartbeat.json
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc      8192 Oct 12 10:05 boinc_mmap_file
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc        27 Oct 12 10:05 wrapper_checkpoint.txt
[2025-10-12 10:05:23] -rw------- 1 boinc boinc      4628 Oct 12 10:05 pilotlog.txt
[2025-10-12 10:05:23] -rw------- 1 boinc boinc   1054625 Oct 12 10:05 log.46676269._056670.job.log.1
[2025-10-12 10:05:23] -rw------- 1 boinc boinc       357 Oct 12 10:05 output.list
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc       620 Oct 12 10:05 runtime_log
[2025-10-12 10:05:23] -rw------- 1 boinc boinc   1341440 Oct 12 10:05 result.tar.gz
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc      8777 Oct 12 10:05 runtime_log.err
[2025-10-12 10:05:23] -rw------- 1 boinc boinc       659 Oct 12 10:05 l6iLDmvrmR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxHgNDmFDSXJm.diag
[2025-10-12 10:05:23] -rw-r--r-- 1 boinc boinc     13017 Oct 12 10:05 stderr.txt
[2025-10-12 10:05:23] HITS file was successfully produced:
[2025-10-12 10:05:23] -rw------- 1 boinc boinc 194752365 Oct 12 10:04 shared/HITS.pool.root.1
[2025-10-12 10:05:23]  *** Contents of shared directory: ***
[2025-10-12 10:05:23] total 410968
[2025-10-12 10:05:23] -rw-r--r-- 2 boinc boinc 224137338 Oct 12 08:02 ATLAS.root_0
[2025-10-12 10:05:23] -rw-r--r-- 2 boinc boinc    569680 Oct 12 08:02 input.tar.gz
[2025-10-12 10:05:23] -rw-r--r-- 2 boinc boinc     15120 Oct 12 08:02 start_atlas.sh
[2025-10-12 10:05:23] -rw------- 1 boinc boinc 194752365 Oct 12 10:04 HITS.pool.root.1
[2025-10-12 10:05:23] -rw------- 1 boinc boinc   1341440 Oct 12 10:05 result.tar.gz
10:05:24 (2127924): run_atlas exited; CPU time 14187.410901
10:05:24 (2127924): called boinc_finish(0)

</stderr_txt>
]]>

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