Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:13:33 (3704969): wrapper (7.7.26015): starting
17:13:33 (3704969): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 17:13:33] Arguments: --nthreads 8
[2025-10-11 17:13:33] Threads: 8
[2025-10-11 17:13:33] Checking for CVMFS
[2025-10-11 17:13:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 17:13:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 17:13:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 17:13:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 17:13:34] 2.13.2.0 5060 4765 92192 151597 3 16 39174090 40960001 25585 16776704 0 14835349 99.857 5050946 36725 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 17:13:34] CVMFS is ok
[2025-10-11 17:13:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 17:13:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 17:13:34] Further information can be found at the LHC@home message board.
[2025-10-11 17:13:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 17:13:34] Checking for apptainer binary...
[2025-10-11 17:13:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 17:13:34] Running /usr/bin/apptainer --version
[2025-10-11 17:13:34] apptainer version 1.4.3-1.el9
[2025-10-11 17:13:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 17:13:35] c-212-3.aglt2.org
[2025-10-11 17:13:35] apptainer works
[2025-10-11 17:13:35] Set ATHENA_PROC_NUMBER=8
[2025-10-11 17:13:35] Set ATHENA_CORE_NUMBER=8
[2025-10-11 17:13:35] Starting ATLAS job with PandaID=6838451530
[2025-10-11 17:13:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:20:28 (4018729): wrapper (7.7.26015): starting
19:20:28 (4018729): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 19:20:28] Arguments: --nthreads 8
[2025-10-11 19:20:28] Threads: 8
[2025-10-11 19:20:28] This job has been restarted, cleaning up previous attempt
[2025-10-11 19:20:28] Checking for CVMFS
[2025-10-11 19:20:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 19:20:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 19:20:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 19:20:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 19:20:29] 2.13.2.0 5060 4892 98764 151600 1 196 39970933 40960000 21269 16776704 0 15212820 99.854 5341933 36454 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 19:20:29] CVMFS is ok
[2025-10-11 19:20:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 19:20:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 19:20:29] Further information can be found at the LHC@home message board.
[2025-10-11 19:20:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 19:20:29] Checking for apptainer binary...
[2025-10-11 19:20:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 19:20:29] Running /usr/bin/apptainer --version
[2025-10-11 19:20:29] apptainer version 1.4.3-1.el9
[2025-10-11 19:20:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 19:20:29] c-212-3.aglt2.org
[2025-10-11 19:20:29] apptainer works
[2025-10-11 19:20:29] Set ATHENA_PROC_NUMBER=8
[2025-10-11 19:20:29] Set ATHENA_CORE_NUMBER=8
[2025-10-11 19:20:29] Starting ATLAS job with PandaID=6838451530
[2025-10-11 19:20:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 01:00:28]  *** The last 200 lines of the pilot log: ***
[2025-10-12 01:00:28] 2025-10-12 04:59:54,381 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 01:00:28] 2025-10-12 04:59:54,382 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 01:00:28] 2025-10-12 04:59:54,382 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 01:00:28] 2025-10-12 04:59:54,387 | INFO     | fitting pss+swap vs Time
[2025-10-12 01:00:28] 2025-10-12 04:59:54,387 | INFO     | sum of square deviations: 11450248727.72975
[2025-10-12 01:00:28] 2025-10-12 04:59:54,390 | INFO     | sum of deviations: 44581051907.16214
[2025-10-12 01:00:28] 2025-10-12 04:59:54,391 | INFO     | mean x: 1760235001.2342343
[2025-10-12 01:00:28] 2025-10-12 04:59:54,391 | INFO     | mean y: 2488124.126126126
[2025-10-12 01:00:28] 2025-10-12 04:59:54,391 | INFO     | -- intersect: -6850911293.196919
[2025-10-12 01:00:28] 2025-10-12 04:59:54,391 | INFO     | intersect: -6850911293.196919
[2025-10-12 01:00:28] 2025-10-12 04:59:54,391 | INFO     | chi2: 1.412197854850862
[2025-10-12 01:00:28] 2025-10-12 04:59:54,392 | INFO     | sum of square deviations: 10942166428.390263
[2025-10-12 01:00:28] 2025-10-12 04:59:54,395 | INFO     | sum of deviations: 43655368993.80488
[2025-10-12 01:00:28] 2025-10-12 04:59:54,395 | INFO     | mean x: 1760234848.7317073
[2025-10-12 01:00:28] 2025-10-12 04:59:54,395 | INFO     | mean y: 2487846.2591463416
[2025-10-12 01:00:28] 2025-10-12 04:59:54,395 | INFO     | -- intersect: -7020225831.149406
[2025-10-12 01:00:28] 2025-10-12 04:59:54,395 | INFO     | intersect: -7020225831.149406
[2025-10-12 01:00:28] 2025-10-12 04:59:54,396 | INFO     | chi2: 1.4125314336907133
[2025-10-12 01:00:28] 2025-10-12 04:59:54,396 | INFO     | current chi2=1.4125314336907133 (change=-0.02362125382824129 %)
[2025-10-12 01:00:28] 2025-10-12 04:59:54,396 | INFO     | right removable region: 327
[2025-10-12 01:00:28] 2025-10-12 04:59:54,396 | INFO     | sum of square deviations: 10942159597.451275
[2025-10-12 01:00:28] 2025-10-12 04:59:54,399 | INFO     | sum of deviations: -5563880584.896341
[2025-10-12 01:00:28] 2025-10-12 04:59:54,400 | INFO     | mean x: 1760235153.737805
[2025-10-12 01:00:28] 2025-10-12 04:59:54,400 | INFO     | mean y: 2503077.838414634
[2025-10-12 01:00:28] 2025-10-12 04:59:54,400 | INFO     | -- intersect: 897549262.2328577
[2025-10-12 01:00:28] 2025-10-12 04:59:54,400 | INFO     | intersect: 897549262.2328577
[2025-10-12 01:00:28] 2025-10-12 04:59:54,400 | INFO     | chi2: 0.04510459193456005
[2025-10-12 01:00:28] 2025-10-12 04:59:54,400 | INFO     | current chi2=0.04510459193456005 (change=96.80607134619083 %)
[2025-10-12 01:00:28] 2025-10-12 04:59:54,401 | INFO     | sum of square deviations: 10449326567.164047
[2025-10-12 01:00:28] 2025-10-12 04:59:54,404 | INFO     | sum of deviations: -12244501679.448927
[2025-10-12 01:00:28] 2025-10-12 04:59:54,404 | INFO     | mean x: 1760235306.241486
[2025-10-12 01:00:28] 2025-10-12 04:59:54,404 | INFO     | mean y: 2505130.0185758513
[2025-10-12 01:00:28] 2025-10-12 04:59:54,404 | INFO     | -- intersect: 2065145628.9027758
[2025-10-12 01:00:28] 2025-10-12 04:59:54,404 | INFO     | intersect: 2065145628.9027758
[2025-10-12 01:00:28] 2025-10-12 04:59:54,405 | INFO     | chi2: 0.0159547214278166
[2025-10-12 01:00:28] 2025-10-12 04:59:54,405 | INFO     | current chi2=0.0159547214278166 (change=64.6272790784484 %)
[2025-10-12 01:00:28] 2025-10-12 04:59:54,405 | INFO     | sum of square deviations: 9971536532.855434
[2025-10-12 01:00:28] 2025-10-12 04:59:54,408 | INFO     | sum of deviations: -12317567072.144651
[2025-10-12 01:00:28] 2025-10-12 04:59:54,408 | INFO     | mean x: 1760235458.7421384
[2025-10-12 01:00:28] 2025-10-12 04:59:54,408 | INFO     | mean y: 2505152.242138365
[2025-10-12 01:00:28] 2025-10-12 04:59:54,408 | INFO     | -- intersect: 2176875998.1377234
[2025-10-12 01:00:28] 2025-10-12 04:59:54,408 | INFO     | intersect: 2176875998.1377234
[2025-10-12 01:00:28] 2025-10-12 04:59:54,409 | INFO     | chi2: 0.015751719549942388
[2025-10-12 01:00:28] 2025-10-12 04:59:54,409 | INFO     | current chi2=0.015751719549942388 (change=1.272362408786932 %)
[2025-10-12 01:00:28] 2025-10-12 04:59:54,409 | INFO     | left removable region: 30
[2025-10-12 01:00:28] 2025-10-12 04:59:54,409 | INFO     | sum of square deviations: 8123663979.501629
[2025-10-12 01:00:28] 2025-10-12 04:59:54,412 | INFO     | sum of deviations: -8947348352.764303
[2025-10-12 01:00:28] 2025-10-12 04:59:54,412 | INFO     | mean x: 1760235733.23569
[2025-10-12 01:00:28] 2025-10-12 04:59:54,412 | INFO     | mean y: 2503893.9966329965
[2025-10-12 01:00:28] 2025-10-12 04:59:54,412 | INFO     | -- intersect: 1941215579.7561193
[2025-10-12 01:00:28] 2025-10-12 04:59:54,412 | INFO     | intersect: 1941215579.7561193
[2025-10-12 01:00:28] 2025-10-12 04:59:54,413 | INFO     | chi2: 0.014723665872190764
[2025-10-12 01:00:28] 2025-10-12 04:59:54,413 | INFO     | -- intersect: 1941215579.7561193
[2025-10-12 01:00:28] 2025-10-12 04:59:54,413 | INFO     | current memory leak: -1.10 B/s (using 297 data points, chi2=0.01)
[2025-10-12 01:00:28] 2025-10-12 04:59:54,413 | INFO     | could have reported an average CPU frequency of 3010 MHz (15 samples)
[2025-10-12 01:00:28] 2025-10-12 04:59:54,414 | INFO     | ..............................
[2025-10-12 01:00:28] 2025-10-12 04:59:54,414 | INFO     | . Timing measurements:
[2025-10-12 01:00:28] 2025-10-12 04:59:54,414 | INFO     | . get job = 0 s
[2025-10-12 01:00:28] 2025-10-12 04:59:54,414 | INFO     | . initial setup = 1 s
[2025-10-12 01:00:28] 2025-10-12 04:59:54,414 | INFO     | . payload setup = 7 s
[2025-10-12 01:00:28] 2025-10-12 04:59:54,414 | INFO     | . stage-in = 0 s
[2025-10-12 01:00:28] 2025-10-12 04:59:54,414 | INFO     | . payload execution = 20303 s
[2025-10-12 01:00:28] 2025-10-12 04:59:54,414 | INFO     | . stage-out = 2 s
[2025-10-12 01:00:28] 2025-10-12 04:59:54,414 | INFO     | . log creation = 0 s
[2025-10-12 01:00:28] 2025-10-12 04:59:54,414 | INFO     | ..............................
[2025-10-12 01:00:28] 2025-10-12 04:59:54,505 | INFO     | 
[2025-10-12 01:00:28] 2025-10-12 04:59:54,505 | INFO     | job summary report
[2025-10-12 01:00:28] 2025-10-12 04:59:54,505 | INFO     | --------------------------------------------------
[2025-10-12 01:00:28] 2025-10-12 04:59:54,505 | INFO     | PanDA job id: 6838451530
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | task id: 46676269
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | errors: (none)
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | pilot state: finished 
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | transexitcode: 0
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | exeerrorcode: 0
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | exeerrordiag: 
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | exitcode: 0
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | exitmsg: OK
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | cpuconsumptiontime: 36673 s
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | nevents: 400
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | neventsw: 0
[2025-10-12 01:00:28] 2025-10-12 04:59:54,506 | INFO     | pid: 4068511
[2025-10-12 01:00:28] 2025-10-12 04:59:54,507 | INFO     | pgrp: 4068511
[2025-10-12 01:00:28] 2025-10-12 04:59:54,507 | INFO     | corecount: 8
[2025-10-12 01:00:28] 2025-10-12 04:59:54,507 | INFO     | event service: False
[2025-10-12 01:00:28] 2025-10-12 04:59:54,507 | INFO     | sizes: {0: 2348806, 6: 2349068, 11: 2349096, 20315: 2382776, 20316: 2382775, 20320: 2392013, 20334: 2392151}
[2025-10-12 01:00:28] 2025-10-12 04:59:54,507 | INFO     | --------------------------------------------------
[2025-10-12 01:00:28] 2025-10-12 04:59:54,507 | INFO     | 
[2025-10-12 01:00:28] 2025-10-12 04:59:54,507 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-12 01:00:28] 2025-10-12 04:59:54,612 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,612 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,612 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,612 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,612 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,612 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,612 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,612 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,613 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 01:00:28] 2025-10-12 04:59:54,614 | INFO     | job 6838451530 has completed (purged errors)
[2025-10-12 01:00:28] 2025-10-12 04:59:54,614 | INFO     | overall cleanup function is called
[2025-10-12 01:00:28] 2025-10-12 04:59:55,627 | INFO     | --- collectZombieJob: --- 10, [4068511]
[2025-10-12 01:00:28] 2025-10-12 04:59:55,627 | INFO     | zombie collector waiting for pid 4068511
[2025-10-12 01:00:28] 2025-10-12 04:59:55,627 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 01:00:28] 2025-10-12 04:59:55,628 | INFO     | collected zombie processes
[2025-10-12 01:00:28] 2025-10-12 04:59:55,628 | INFO     | will attempt to kill all subprocesses of pid=4068511
[2025-10-12 01:00:28] 2025-10-12 04:59:56,958 | INFO     | process IDs to be killed: [4068511] (in reverse order)
[2025-10-12 01:00:28] 2025-10-12 04:59:57,261 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 01:00:28] 2025-10-12 04:59:57,261 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 01:00:28] 2025-10-12 04:59:57,369 | INFO     | did not find any defunct processes belonging to 4068511
[2025-10-12 01:00:28] 2025-10-12 04:59:57,422 | INFO     | did not find any defunct processes belonging to 4068511
[2025-10-12 01:00:28] 2025-10-12 04:59:57,423 | INFO     | ready for new job
[2025-10-12 01:00:28] 2025-10-12 04:59:57,431 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 01:00:28] 2025-10-12 04:59:57,434 | INFO     | ***************************************
[2025-10-12 01:00:28] 2025-10-12 04:59:57,434 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 01:00:28] 2025-10-12 04:59:57,435 | INFO     | ***************************************
[2025-10-12 01:00:28] 2025-10-12 04:59:57,435 | INFO     | 
[2025-10-12 01:00:28] 2025-10-12 04:59:57,466 | INFO     | architecture information:
[2025-10-12 01:00:28] 2025-10-12 04:59:57,467 | INFO     | executing command: cat /etc/os-release
[2025-10-12 01:00:28] 2025-10-12 04:59:57,518 | INFO     | cat /etc/os-release:
[2025-10-12 01:00:28] NAME="CentOS Linux"
[2025-10-12 01:00:28] VERSION="7 (Core)"
[2025-10-12 01:00:28] ID="centos"
[2025-10-12 01:00:28] ID_LIKE="rhel fedora"
[2025-10-12 01:00:28] VERSION_ID="7"
[2025-10-12 01:00:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 01:00:28] ANSI_COLOR="0;31"
[2025-10-12 01:00:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 01:00:28] HOME_URL="https://www.centos.org/"
[2025-10-12 01:00:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 01:00:28] 
[2025-10-12 01:00:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 01:00:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 01:00:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 01:00:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 01:00:28] 
[2025-10-12 01:00:28] 2025-10-12 04:59:57,519 | INFO     | ***************************************
[2025-10-12 01:00:28] 2025-10-12 04:59:58,022 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 01:00:28] 2025-10-12 04:59:58,069 | INFO     | sufficient remaining disk space (126736138240 B)
[2025-10-12 01:00:28] 2025-10-12 04:59:58,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 01:00:28] 2025-10-12 04:59:58,070 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 01:00:28] 2025-10-12 04:59:58,070 | INFO     | update_server=False
[2025-10-12 01:00:28] 2025-10-12 04:59:58,070 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 01:00:28] 2025-10-12 04:59:58,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 01:00:28] 2025-10-12 04:59:58,368 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:00:28] 2025-10-12 04:59:58,368 | INFO     | aborting loop
[2025-10-12 01:00:28] 2025-10-12 04:59:58,952 | INFO     | all payload control threads have been joined
[2025-10-12 01:00:28] 2025-10-12 04:59:59,076 | INFO     | [job] retrieve thread has finished
[2025-10-12 01:00:28] 2025-10-12 04:59:59,123 | INFO     | all data control threads have been joined
[2025-10-12 01:00:28] 2025-10-12 04:59:59,133 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 01:00:28] 2025-10-12 04:59:59,154 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 01:00:28] 2025-10-12 04:59:59,159 | INFO     | [job] validate thread has finished
[2025-10-12 01:00:28] 2025-10-12 04:59:59,205 | INFO     | [payload] validate_post thread has finished
[2025-10-12 01:00:28] 2025-10-12 04:59:59,374 | INFO     | [job] job monitor thread has finished
[2025-10-12 01:00:28] 2025-10-12 04:59:59,396 | INFO     | [payload] failed_post thread has finished
[2025-10-12 01:00:28] 2025-10-12 04:59:59,532 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:00:28] 2025-10-12 04:59:59,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 01:00:28] 2025-10-12 04:59:59,643 | INFO     | [data] copytool_in thread has finished
[2025-10-12 01:00:28] 2025-10-12 04:59:59,735 | INFO     | all job control threads have been joined
[2025-10-12 01:00:28] 2025-10-12 04:59:59,902 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 01:00:28] 2025-10-12 04:59:59,958 | INFO     | [payload] control thread has finished
[2025-10-12 01:00:28] 2025-10-12 05:00:00,077 | INFO     | [data] copytool_out thread has finished
[2025-10-12 01:00:28] 2025-10-12 05:00:00,129 | INFO     | [data] control thread has finished
[2025-10-12 01:00:28] 2025-10-12 05:00:00,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 01:00:28] 2025-10-12 05:00:00,537 | INFO     | [job] queue monitor thread has finished
[2025-10-12 01:00:28] 2025-10-12 05:00:00,741 | INFO     | [job] control thread has finished
[2025-10-12 01:00:28] 2025-10-12 05:00:03,655 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 01:00:28] 2025-10-12 05:00:17,323 | INFO     | [monitor] cgroup control has ended
[2025-10-12 01:00:28] 2025-10-12 05:00:17,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139705575823168)>', '<ExcThread(monitor, started 139704791975680)>']
[2025-10-12 01:00:28] 2025-10-12 05:00:22,496 | INFO     | all workflow threads have been joined
[2025-10-12 01:00:28] 2025-10-12 05:00:22,496 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 01:00:28] 2025-10-12 05:00:22,499 | INFO     | traces error code: 0
[2025-10-12 01:00:28] 2025-10-12 05:00:22,500 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 01:00:28] 2025-10-12 05:00:27,604 | INFO     | PID=4037123 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 01:00:28] 2025-10-12 05:00:27,604 | INFO     | .. there are 24 such processes running
[2025-10-12 01:00:28] 2025-10-12 05:00:27,605 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 01:00:28] 2025-10-12 05:00:27,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 01:00:28] 2025-10-12 05:00:27,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 01:00:28] 2025-10-12 05:00:27,605 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 01:00:28] 2025-10-12 05:00:27,605 | INFO     | [monitor] control thread has ended
[2025-10-12 01:00:28] 2025-10-12 05:00:27,792 [wrapper] ==== pilot stdout END ====
[2025-10-12 01:00:28] 2025-10-12 05:00:27,833 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 01:00:28] 2025-10-12 05:00:27,864 [wrapper] pilotpid: 4037123
[2025-10-12 01:00:28] 2025-10-12 05:00:27,977 [wrapper] Pilot exit status: 0
[2025-10-12 01:00:28] 2025-10-12 05:00:28,016 [wrapper] pandaids: 6838451530 6838451530
[2025-10-12 01:00:28] 2025-10-12 05:00:28,102 [wrapper] cleanup supervisor_pilot 1021248 4037124
[2025-10-12 01:00:28] 2025-10-12 05:00:28,107 [wrapper] Test setup, not cleaning
[2025-10-12 01:00:28] 2025-10-12 05:00:28,112 [wrapper] apfmon messages muted
[2025-10-12 01:00:28] 2025-10-12 05:00:28,115 [wrapper] ==== wrapper stdout END ====
[2025-10-12 01:00:28] 2025-10-12 05:00:28,118 [wrapper] ==== wrapper stderr END ====
[2025-10-12 01:00:28]  *** Error codes and diagnostics ***
[2025-10-12 01:00:28]     "exeErrorCode": 0,
[2025-10-12 01:00:28]     "exeErrorDiag": "",
[2025-10-12 01:00:28]     "pilotErrorCode": 0,
[2025-10-12 01:00:28]     "pilotErrorDiag": "",
[2025-10-12 01:00:28]  *** Listing of results directory ***
[2025-10-12 01:00:28] total 632444
[2025-10-12 01:00:28] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 08:51 pilot3.tar.gz
[2025-10-12 01:00:28] -rwx------. 1 boincer umatlas     36292 Oct 11 09:04 runpilot2-wrapper.sh
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 09:04 queuedata.json
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas       100 Oct 11 17:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 01:00:28] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 17:13 run_atlas
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas       105 Oct 11 17:13 job.xml
[2025-10-12 01:00:28] -rw-r--r--. 3 boincer umatlas 218043254 Oct 11 17:13 EVNT.46676267._002334.pool.root.1
[2025-10-12 01:00:28] -rw-r--r--. 3 boincer umatlas 218043254 Oct 11 17:13 ATLAS.root_0
[2025-10-12 01:00:28] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 17:13 start_atlas.sh
[2025-10-12 01:00:28] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 17:13 shared
[2025-10-12 01:00:28] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 17:13 input.tar.gz
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas         0 Oct 11 17:13 boinc_lockfile
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas      2549 Oct 11 19:20 pandaJob.out
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas    975528 Oct 11 19:20 agis_schedconf.cvmfs.json
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas      6946 Oct 12 00:57 init_data.xml
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas 201041694 Oct 12 00:58 HITS.46676269._058210.pool.root.1
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas       531 Oct 12 00:58 boinc_task_state.xml
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas      1049 Oct 12 00:59 memory_monitor_summary.json
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas   1560580 Oct 12 00:59 agis_ddmendpoints.agis.ALL.json
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas    554875 Oct 12 00:59 log.46676269._058210.job.log.tgz.1
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas        95 Oct 12 00:59 pilot_heartbeat.json
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas      7802 Oct 12 00:59 heartbeat.json
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas        28 Oct 12 01:00 wrapper_checkpoint.txt
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas       823 Oct 12 01:00 pilotlog.txt
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas   2736134 Oct 12 01:00 log.46676269._058210.job.log.1
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas       357 Oct 12 01:00 output.list
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas       620 Oct 12 01:00 runtime_log
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas   3307520 Oct 12 01:00 result.tar.gz
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas      8784 Oct 12 01:00 runtime_log.err
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas       785 Oct 12 01:00 6huNDmlRoR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmdwRMDmJyDgZm.diag
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 01:00 boinc_mmap_file
[2025-10-12 01:00:28] -rw-r--r--. 1 boincer umatlas     23133 Oct 12 01:00 stderr.txt
[2025-10-12 01:00:28] HITS file was successfully produced:
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas 201041694 Oct 12 00:58 shared/HITS.pool.root.1
[2025-10-12 01:00:28]  *** Contents of shared directory: ***
[2025-10-12 01:00:28] total 413084
[2025-10-12 01:00:28] -rw-r--r--. 3 boincer umatlas 218043254 Oct 11 17:13 ATLAS.root_0
[2025-10-12 01:00:28] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 17:13 start_atlas.sh
[2025-10-12 01:00:28] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 17:13 input.tar.gz
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas 201041694 Oct 12 00:58 HITS.pool.root.1
[2025-10-12 01:00:28] -rw-------. 1 boincer umatlas   3307520 Oct 12 01:00 result.tar.gz
01:00:29 (4018729): run_atlas exited; CPU time 37370.141391
01:00:29 (4018729): called boinc_finish(0)

</stderr_txt>
]]>

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