Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
03:41:22 (834900): wrapper (7.7.26015): starting
03:41:22 (834900): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 03:41:22] Arguments: --nthreads 4
[2025-10-12 03:41:22] Threads: 4
[2025-10-12 03:41:22] Checking for CVMFS
[2025-10-12 03:41:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 03:41:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 03:41:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 03:41:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 03:41:23] 2.13.2.0 428253 3708 52296 151602 2 57 4077735 4096001 1844 130560 0 12449244 99.997 247705 2575 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 03:41:23] CVMFS is ok
[2025-10-12 03:41:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 03:41:23] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 03:41:23] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 03:41:23] Further information can be found at the LHC@home message board.
[2025-10-12 03:41:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 03:41:23] Checking for apptainer binary...
[2025-10-12 03:41:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 03:41:23] Running /usr/bin/apptainer --version
[2025-10-12 03:41:23] apptainer version 1.4.2
[2025-10-12 03:41:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 03:41:23] Ryzen-9-7950X3D-Zen4-Ubu24
[2025-10-12 03:41:23] apptainer works
[2025-10-12 03:41:23] Set ATHENA_PROC_NUMBER=4
[2025-10-12 03:41:23] Set ATHENA_CORE_NUMBER=4
[2025-10-12 03:41:23] Starting ATLAS job with PandaID=6838295030
[2025-10-12 03:41:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 05:01:03]  *** The last 200 lines of the pilot log: ***
[2025-10-12 05:01:03]  workdir=None
[2025-10-12 05:01:03] ]
[2025-10-12 05:01:03] 2025-10-12 03:00:19,439 | INFO     | transferring file log.46676269._055824.job.log.tgz.1 from /var/lib/boinc-client/slots/5/PanDA_Pilot-6838295030/log.46676269._055824.job.log.tgz.1 to /var/lib/boinc
[2025-10-12 05:01:03] 2025-10-12 03:00:19,440 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/5/PanDA_Pilot-6838295030/log.46676269._055824.job.log.tgz.1 /var/lib/boinc-client/slots/5/log.466762
[2025-10-12 05:01:03] 2025-10-12 03:00:19,476 | INFO     | adding to output.list: log.46676269._055824.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/16/log.46676269._055824.job.log.tg
[2025-10-12 05:01:03] 2025-10-12 03:00:19,477 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 05:01:03] 2025-10-12 03:00:19,477 | INFO     | summary of transferred files:
[2025-10-12 05:01:03] 2025-10-12 03:00:19,477 | INFO     |  -- lfn=log.46676269._055824.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 05:01:03] 2025-10-12 03:00:19,477 | INFO     | stage-out finished correctly
[2025-10-12 05:01:03] 2025-10-12 03:00:19,763 | INFO     | time since job start (4728s) is within the limit (172800.0s)
[2025-10-12 05:01:03] 2025-10-12 03:00:21,022 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 05:01:03] 2025-10-12 03:00:21,768 | INFO     | time since job start (4730s) is within the limit (172800.0s)
[2025-10-12 05:01:03] 2025-10-12 03:00:23,683 | INFO     | job 6838295030 has state=finished
[2025-10-12 05:01:03] 2025-10-12 03:00:23,684 | INFO     | preparing for final server update for job 6838295030 in state='finished'
[2025-10-12 05:01:03] 2025-10-12 03:00:23,684 | INFO     | this job has now completed (state=finished)
[2025-10-12 05:01:03] 2025-10-12 03:00:23,684 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 05:01:03] 2025-10-12 03:00:23,684 | INFO     | log transfer has been attempted: DONE
[2025-10-12 05:01:03] 2025-10-12 03:00:23,684 | INFO     | job 6838295030 has finished - writing final server update
[2025-10-12 05:01:03] 2025-10-12 03:00:23,684 | INFO     | total number of processed events: 400 (read)
[2025-10-12 05:01:03] 2025-10-12 03:00:23,691 | INFO     | executing command: lscpu
[2025-10-12 05:01:03] 2025-10-12 03:00:23,720 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 05:01:03] 2025-10-12 03:00:23,775 | INFO     | time since job start (4732s) is within the limit (172800.0s)
[2025-10-12 05:01:03] 2025-10-12 03:00:24,508 | WARNING  | process 851362 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 05:01:03] 2025-10-12 03:00:24,508 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6838295030/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 05:01:03] 2025-10-12 03:00:24,584 | INFO     | number of running child processes to parent process 851362: 1
[2025-10-12 05:01:03] 2025-10-12 03:00:24,584 | INFO     | maximum number of monitored processes: 6
[2025-10-12 05:01:03] 2025-10-12 03:00:25,780 | INFO     | time since job start (4734s) is within the limit (172800.0s)
[2025-10-12 05:01:03] 2025-10-12 03:00:27,087 | INFO     | monitor loop #362: job 0:6838295030 is in state 'finished'
[2025-10-12 05:01:03] 2025-10-12 03:00:27,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:01:03] 2025-10-12 03:00:27,785 | INFO     | time since job start (4736s) is within the limit (172800.0s)
[2025-10-12 05:01:03] 2025-10-12 03:00:29,589 | INFO     | monitor loop #363: job 0:6838295030 is in state 'finished'
[2025-10-12 05:01:03] 2025-10-12 03:00:29,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 05:01:03] 2025-10-12 03:00:29,790 | INFO     | time since job start (4738s) is within the limit (172800.0s)
[2025-10-12 05:01:03] 2025-10-12 03:00:30,863 | INFO     | PID=838747 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 05:01:03] 2025-10-12 03:00:30,864 | INFO     | .. there are 4 such processes running
[2025-10-12 05:01:03] 2025-10-12 03:00:31,520 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 05:01:03] 2025-10-12 03:00:31,522 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4537.103937499999
[2025-10-12 05:01:03] 2025-10-12 03:00:31,525 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6838295030/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 05:01:03] 2025-10-12 03:00:31,525 | INFO     | extracted standard info from prmon json
[2025-10-12 05:01:03] 2025-10-12 03:00:31,525 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 05:01:03] 2025-10-12 03:00:31,525 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 05:01:03] 2025-10-12 03:00:31,526 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 05:01:03] 2025-10-12 03:00:31,526 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 05:01:03] 2025-10-12 03:00:31,526 | INFO     | fitting pss+swap vs Time
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | sum of square deviations: 110960220.0
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | sum of deviations: -5500576790.000001
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | mean x: 1760235750.0
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | mean y: 2366892.408450704
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | -- intersect: 87261673979.02242
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | intersect: 87261673979.02242
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | chi2: 0.04324694984074359
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | -- intersect: 87261673979.02242
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | current memory leak: -49.57 B/s (using 71 data points, chi2=0.04)
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | could have reported an average CPU frequency of 4479 MHz (6 samples)
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | ..............................
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | . Timing measurements:
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | . get job = 0 s
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | . initial setup = 1 s
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | . payload setup = 3 s
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | . stage-in = 0 s
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | . payload execution = 4707 s
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | . stage-out = 0 s
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | . log creation = 0 s
[2025-10-12 05:01:03] 2025-10-12 03:00:31,527 | INFO     | ..............................
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | 
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | job summary report
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | --------------------------------------------------
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | PanDA job id: 6838295030
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | task id: 46676269
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | errors: (none)
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | pilot state: finished 
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | transexitcode: 0
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | exeerrorcode: 0
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | exeerrordiag: 
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | exitcode: 0
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | exitmsg: OK
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | cpuconsumptiontime: 18282 s
[2025-10-12 05:01:03] 2025-10-12 03:00:31,574 | INFO     | nevents: 400
[2025-10-12 05:01:03] 2025-10-12 03:00:31,575 | INFO     | neventsw: 0
[2025-10-12 05:01:03] 2025-10-12 03:00:31,575 | INFO     | pid: 851362
[2025-10-12 05:01:03] 2025-10-12 03:00:31,575 | INFO     | pgrp: 851362
[2025-10-12 05:01:03] 2025-10-12 03:00:31,575 | INFO     | corecount: 4
[2025-10-12 05:01:03] 2025-10-12 03:00:31,575 | INFO     | event service: False
[2025-10-12 05:01:03] 2025-10-12 03:00:31,575 | INFO     | sizes: {0: 2348864, 3: 2349126, 11: 2349154, 4715: 2384515, 4717: 2384515, 4727: 2384709}
[2025-10-12 05:01:03] 2025-10-12 03:00:31,575 | INFO     | --------------------------------------------------
[2025-10-12 05:01:03] 2025-10-12 03:00:31,575 | INFO     | 
[2025-10-12 05:01:03] 2025-10-12 03:00:31,575 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,592 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,593 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,593 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 05:01:03] 2025-10-12 03:00:31,593 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,593 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 05:01:03] 2025-10-12 03:00:31,593 | INFO     | job 6838295030 has completed (purged errors)
[2025-10-12 05:01:03] 2025-10-12 03:00:31,593 | INFO     | overall cleanup function is called
[2025-10-12 05:01:03] 2025-10-12 03:00:32,599 | INFO     | --- collectZombieJob: --- 10, [851362]
[2025-10-12 05:01:03] 2025-10-12 03:00:32,599 | INFO     | zombie collector waiting for pid 851362
[2025-10-12 05:01:03] 2025-10-12 03:00:32,599 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 05:01:03] 2025-10-12 03:00:32,600 | INFO     | collected zombie processes
[2025-10-12 05:01:03] 2025-10-12 03:00:32,600 | INFO     | will attempt to kill all subprocesses of pid=851362
[2025-10-12 05:01:03] 2025-10-12 03:00:32,674 | INFO     | process IDs to be killed: [851362] (in reverse order)
[2025-10-12 05:01:03] 2025-10-12 03:00:32,754 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 05:01:03] 2025-10-12 03:00:32,754 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 05:01:03] 2025-10-12 03:00:32,757 | INFO     | did not find any defunct processes belonging to 851362
[2025-10-12 05:01:03] 2025-10-12 03:00:32,759 | INFO     | did not find any defunct processes belonging to 851362
[2025-10-12 05:01:03] 2025-10-12 03:00:32,759 | INFO     | ready for new job
[2025-10-12 05:01:03] 2025-10-12 03:00:32,759 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 05:01:03] 2025-10-12 03:00:32,760 | INFO     | ***************************************
[2025-10-12 05:01:03] 2025-10-12 03:00:32,760 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 05:01:03] 2025-10-12 03:00:32,760 | INFO     | ***************************************
[2025-10-12 05:01:03] 2025-10-12 03:00:32,760 | INFO     | 
[2025-10-12 05:01:03] 2025-10-12 03:00:32,761 | INFO     | architecture information:
[2025-10-12 05:01:03] 2025-10-12 03:00:32,764 | INFO     | executing command: cat /etc/os-release
[2025-10-12 05:01:03] 2025-10-12 03:00:32,785 | INFO     | cat /etc/os-release:
[2025-10-12 05:01:03] NAME="CentOS Linux"
[2025-10-12 05:01:03] VERSION="7 (Core)"
[2025-10-12 05:01:03] ID="centos"
[2025-10-12 05:01:03] ID_LIKE="rhel fedora"
[2025-10-12 05:01:03] VERSION_ID="7"
[2025-10-12 05:01:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 05:01:03] ANSI_COLOR="0;31"
[2025-10-12 05:01:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 05:01:03] HOME_URL="https://www.centos.org/"
[2025-10-12 05:01:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 05:01:03] 
[2025-10-12 05:01:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 05:01:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 05:01:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 05:01:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 05:01:03] 
[2025-10-12 05:01:03] 2025-10-12 03:00:32,785 | INFO     | ***************************************
[2025-10-12 05:01:03] 2025-10-12 03:00:33,287 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2025-10-12 05:01:03] 2025-10-12 03:00:33,309 | INFO     | sufficient remaining disk space (1764123213824 B)
[2025-10-12 05:01:03] 2025-10-12 03:00:33,310 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 05:01:03] 2025-10-12 03:00:33,310 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 05:01:03] 2025-10-12 03:00:33,310 | INFO     | update_server=False
[2025-10-12 05:01:03] 2025-10-12 03:00:33,310 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 05:01:03] 2025-10-12 03:00:33,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 05:01:03] 2025-10-12 03:00:33,312 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:01:03] 2025-10-12 03:00:33,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:01:03] 2025-10-12 03:00:33,313 | INFO     | aborting loop
[2025-10-12 05:01:03] 2025-10-12 03:00:33,719 | INFO     | all payload control threads have been joined
[2025-10-12 05:01:03] 2025-10-12 03:00:33,927 | INFO     | all job control threads have been joined
[2025-10-12 05:01:03] 2025-10-12 03:00:34,197 | INFO     | all data control threads have been joined
[2025-10-12 05:01:03] 2025-10-12 03:00:34,315 | INFO     | [job] retrieve thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:34,317 | INFO     | [job] queue monitor thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:34,318 | INFO     | [job] job monitor thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:34,433 | INFO     | [payload] validate_post thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:34,600 | INFO     | [data] copytool_in thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:34,724 | INFO     | [payload] control thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:34,849 | INFO     | [job] validate thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:34,932 | INFO     | [job] control thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:34,955 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:34,997 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:35,081 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:35,202 | INFO     | [data] control thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:35,314 | INFO     | [data] copytool_out thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:35,425 | INFO     | [payload] failed_post thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:36,081 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 05:01:03] 2025-10-12 03:00:38,204 | INFO     | [monitor] cgroup control has ended
[2025-10-12 05:01:03] 2025-10-12 03:00:40,086 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:43,735 | INFO     | job.realtimelogging is not enabled
[2025-10-12 05:01:03] 2025-10-12 03:00:44,740 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 05:01:03] 2025-10-12 03:00:45,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137000379557696)>', '<ExcThread(monitor, started 136999474272000)>']
[2025-10-12 05:01:03] 2025-10-12 03:00:50,603 | INFO     | all workflow threads have been joined
[2025-10-12 05:01:03] 2025-10-12 03:00:50,603 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 05:01:03] 2025-10-12 03:00:50,604 | INFO     | traces error code: 0
[2025-10-12 05:01:03] 2025-10-12 03:00:50,604 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 05:01:03] 2025-10-12 03:01:03,018 | INFO     | PID=838747 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 05:01:03] 2025-10-12 03:01:03,018 | INFO     | .. there are 4 such processes running
[2025-10-12 05:01:03] 2025-10-12 03:01:03,019 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 05:01:03] 2025-10-12 03:01:03,019 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 05:01:03] 2025-10-12 03:01:03,019 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 05:01:03] 2025-10-12 03:01:03,019 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 05:01:03] 2025-10-12 03:01:03,019 | INFO     | [monitor] control thread has ended
[2025-10-12 05:01:03] 2025-10-12 03:01:03,080 [wrapper] ==== pilot stdout END ====
[2025-10-12 05:01:03] 2025-10-12 03:01:03,086 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 05:01:03] 2025-10-12 03:01:03,089 [wrapper] pilotpid: 838747
[2025-10-12 05:01:03] 2025-10-12 03:01:03,093 [wrapper] Pilot exit status: 0
[2025-10-12 05:01:03] 2025-10-12 03:01:03,110 [wrapper] pandaids: 6838295030
[2025-10-12 05:01:03] 2025-10-12 03:01:03,148 [wrapper] cleanup supervisor_pilot  927744 838748
[2025-10-12 05:01:03] 2025-10-12 03:01:03,155 [wrapper] Test setup, not cleaning
[2025-10-12 05:01:03] 2025-10-12 03:01:03,158 [wrapper] apfmon messages muted
[2025-10-12 05:01:03] 2025-10-12 03:01:03,166 [wrapper] ==== wrapper stdout END ====
[2025-10-12 05:01:03] 2025-10-12 03:01:03,168 [wrapper] ==== wrapper stderr END ====
[2025-10-12 05:01:03]  *** Error codes and diagnostics ***
[2025-10-12 05:01:03]     "exeErrorCode": 0,
[2025-10-12 05:01:03]     "exeErrorDiag": "",
[2025-10-12 05:01:03]     "pilotErrorCode": 0,
[2025-10-12 05:01:03]     "pilotErrorDiag": "",
[2025-10-12 05:01:03]  *** Listing of results directory ***
[2025-10-12 05:01:03] total 408876
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc    557409 Oct 11 12:07 pilot3.tar.gz
[2025-10-12 05:01:03] -rwx------ 1 boinc boinc     36292 Oct 11 12:09 runpilot2-wrapper.sh
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc      5112 Oct 11 12:10 queuedata.json
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc       100 Oct 12 03:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 05:01:03] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 03:41 run_atlas
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc       105 Oct 12 03:41 job.xml
[2025-10-12 05:01:03] -rw-r--r-- 2 boinc boinc 222313254 Oct 12 03:41 EVNT.46676267._002242.pool.root.1
[2025-10-12 05:01:03] -rw-r--r-- 2 boinc boinc     15120 Oct 12 03:41 start_atlas.sh
[2025-10-12 05:01:03] drwxrwx--x 2 boinc boinc      4096 Oct 12 03:41 shared
[2025-10-12 05:01:03] -rw-r--r-- 2 boinc boinc    569683 Oct 12 03:41 input.tar.gz
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc         0 Oct 12 03:41 boinc_lockfile
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc      2550 Oct 12 03:41 pandaJob.out
[2025-10-12 05:01:03] -rw------- 1 boinc boinc    975496 Oct 12 03:41 agis_schedconf.cvmfs.json
[2025-10-12 05:01:03] -rw------- 1 boinc boinc   1560580 Oct 12 03:41 agis_ddmendpoints.agis.ALL.json
[2025-10-12 05:01:03] drwx------ 5 boinc boinc      4096 Oct 12 03:41 pilot3
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc      9520 Oct 12 04:59 init_data.xml
[2025-10-12 05:01:03] -rw------- 1 boinc boinc 190478152 Oct 12 04:59 HITS.46676269._055824.pool.root.1
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc       529 Oct 12 05:00 boinc_task_state.xml
[2025-10-12 05:01:03] -rw------- 1 boinc boinc      1025 Oct 12 05:00 memory_monitor_summary.json
[2025-10-12 05:01:03] -rw------- 1 boinc boinc    278705 Oct 12 05:00 log.46676269._055824.job.log.tgz.1
[2025-10-12 05:01:03] -rw------- 1 boinc boinc      7783 Oct 12 05:00 heartbeat.json
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc        27 Oct 12 05:00 wrapper_checkpoint.txt
[2025-10-12 05:01:03] -rw------- 1 boinc boinc       821 Oct 12 05:01 pilotlog.txt
[2025-10-12 05:01:03] -rw------- 1 boinc boinc        95 Oct 12 05:01 pilot_heartbeat.json
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc      8192 Oct 12 05:01 boinc_mmap_file
[2025-10-12 05:01:03] -rw------- 1 boinc boinc    716539 Oct 12 05:01 log.46676269._055824.job.log.1
[2025-10-12 05:01:03] -rw------- 1 boinc boinc       357 Oct 12 05:01 output.list
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc       620 Oct 12 05:01 runtime_log
[2025-10-12 05:01:03] -rw------- 1 boinc boinc   1013760 Oct 12 05:01 result.tar.gz
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc      8841 Oct 12 05:01 runtime_log.err
[2025-10-12 05:01:03] -rw------- 1 boinc boinc       657 Oct 12 05:01 hENODmCjlR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmY9fNDmtjWXJo.diag
[2025-10-12 05:01:03] -rw-r--r-- 1 boinc boinc     22400 Oct 12 05:01 stderr.txt
[2025-10-12 05:01:03] HITS file was successfully produced:
[2025-10-12 05:01:03] -rw------- 1 boinc boinc 190478152 Oct 12 04:59 shared/HITS.pool.root.1
[2025-10-12 05:01:03]  *** Contents of shared directory: ***
[2025-10-12 05:01:03] total 404696
[2025-10-12 05:01:03] -rw-r--r-- 2 boinc boinc 222313254 Oct 12 03:41 ATLAS.root_0
[2025-10-12 05:01:03] -rw-r--r-- 2 boinc boinc     15120 Oct 12 03:41 start_atlas.sh
[2025-10-12 05:01:03] -rw-r--r-- 2 boinc boinc    569683 Oct 12 03:41 input.tar.gz
[2025-10-12 05:01:03] -rw------- 1 boinc boinc 190478152 Oct 12 04:59 HITS.pool.root.1
[2025-10-12 05:01:03] -rw------- 1 boinc boinc   1013760 Oct 12 05:01 result.tar.gz
05:01:04 (834900): run_atlas exited; CPU time 18301.645217
05:01:04 (834900): called boinc_finish(0)

</stderr_txt>
]]>

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