Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:44:03 (3508768): wrapper (7.7.26015): starting
16:44:03 (3508768): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 16:44:03] Arguments: --nthreads 8
[2025-10-11 16:44:03] Threads: 8
[2025-10-11 16:44:03] Checking for CVMFS
[2025-10-11 16:44:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 16:44:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 16:44:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 16:44:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 16:44:08] 2.13.2.0 7655 56344 380388 151595 1 342 23347971 32935937 31535 16776704 10 88261457 99.527 111203161 8812 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 16:44:08] CVMFS is ok
[2025-10-11 16:44:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:44:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 16:44:08] Further information can be found at the LHC@home message board.
[2025-10-11 16:44:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:44:08] Checking for apptainer binary...
[2025-10-11 16:44:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 16:44:08] Running /usr/bin/apptainer --version
[2025-10-11 16:44:08] apptainer version 1.4.3-1.el9
[2025-10-11 16:44:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:44:10] c6-12-25-4.aglt2.org
[2025-10-11 16:44:10] apptainer works
[2025-10-11 16:44:10] Set ATHENA_PROC_NUMBER=8
[2025-10-11 16:44:10] Set ATHENA_CORE_NUMBER=8
[2025-10-11 16:44:10] Starting ATLAS job with PandaID=6838773199
[2025-10-11 16:44:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:38:38]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:38:38] 2025-10-12 23:37:35,705 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:38:38] 2025-10-12 23:37:35,714 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:38:38] 2025-10-12 23:37:35,715 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:38:38] 2025-10-12 23:37:35,938 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:38:38] 2025-10-12 23:37:35,954 | INFO     | sum of square deviations: 1220741213557.9236
[2025-10-12 19:38:38] 2025-10-12 23:37:36,455 | INFO     | sum of deviations: 2446045238154.0205
[2025-10-12 19:38:38] 2025-10-12 23:37:36,462 | INFO     | mean x: 1760263967.2279923
[2025-10-12 19:38:38] 2025-10-12 23:37:36,463 | INFO     | mean y: 2104170.7055098163
[2025-10-12 19:38:38] 2025-10-12 23:37:36,463 | INFO     | -- intersect: -3525003169.5824103
[2025-10-12 19:38:38] 2025-10-12 23:37:36,463 | INFO     | intersect: -3525003169.5824103
[2025-10-12 19:38:38] 2025-10-12 23:37:36,475 | INFO     | chi2: 10.91974813494643
[2025-10-12 19:38:38] 2025-10-12 23:37:36,494 | INFO     | sum of square deviations: 1209181417490.704
[2025-10-12 19:38:38] 2025-10-12 23:37:36,877 | INFO     | sum of deviations: 2608732495607.0693
[2025-10-12 19:38:38] 2025-10-12 23:37:36,878 | INFO     | mean x: 1760263814.729352
[2025-10-12 19:38:38] 2025-10-12 23:37:36,878 | INFO     | mean y: 2106313.033036849
[2025-10-12 19:38:38] 2025-10-12 23:37:36,879 | INFO     | -- intersect: -3795551629.6892138
[2025-10-12 19:38:38] 2025-10-12 23:37:36,879 | INFO     | intersect: -3795551629.6892138
[2025-10-12 19:38:38] 2025-10-12 23:37:36,897 | INFO     | chi2: 9.599997703641508
[2025-10-12 19:38:38] 2025-10-12 23:37:36,898 | INFO     | current chi2=9.599997703641508 (change=12.085905416456715 %)
[2025-10-12 19:38:38] 2025-10-12 23:37:36,898 | INFO     | right removable region: 1573
[2025-10-12 19:38:38] 2025-10-12 23:37:36,917 | INFO     | sum of square deviations: 1209180715561.3228
[2025-10-12 19:38:38] 2025-10-12 23:37:37,317 | INFO     | time since job start (96684s) is within the limit (172800.0s)
[2025-10-12 19:38:38] 2025-10-12 23:37:37,750 | INFO     | sum of deviations: 2020855741866.9634
[2025-10-12 19:38:38] 2025-10-12 23:37:37,775 | INFO     | mean x: 1760264119.731258
[2025-10-12 19:38:38] 2025-10-12 23:37:37,775 | INFO     | mean y: 2109778.3970775097
[2025-10-12 19:38:38] 2025-10-12 23:37:37,776 | INFO     | -- intersect: -2939749786.3330593
[2025-10-12 19:38:38] 2025-10-12 23:37:37,776 | INFO     | intersect: -2939749786.3330593
[2025-10-12 19:38:38] 2025-10-12 23:37:37,811 | INFO     | chi2: 7.29097576393831
[2025-10-12 19:38:38] 2025-10-12 23:37:37,842 | INFO     | current chi2=7.29097576393831 (change=33.231282683114024 %)
[2025-10-12 19:38:38] 2025-10-12 23:37:37,840 | INFO     | monitor loop #3381: job 0:6838773199 is in state 'finished'
[2025-10-12 19:38:38] 2025-10-12 23:37:37,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:38:38] 2025-10-12 23:37:37,872 | INFO     | sum of square deviations: 1197694099593.94
[2025-10-12 19:38:38] 2025-10-12 23:37:38,680 | INFO     | sum of deviations: 1716020900880.4397
[2025-10-12 19:38:38] 2025-10-12 23:37:38,681 | INFO     | mean x: 1760264272.2300828
[2025-10-12 19:38:38] 2025-10-12 23:37:38,681 | INFO     | mean y: 2113825.126195029
[2025-10-12 19:38:38] 2025-10-12 23:37:38,682 | INFO     | -- intersect: -2519941082.92088
[2025-10-12 19:38:38] 2025-10-12 23:37:38,682 | INFO     | intersect: -2519941082.92088
[2025-10-12 19:38:38] 2025-10-12 23:37:38,736 | INFO     | chi2: 5.521582726220493
[2025-10-12 19:38:38] 2025-10-12 23:37:38,737 | INFO     | current chi2=5.521582726220493 (change=24.26826113548974 %)
[2025-10-12 19:38:38] 2025-10-12 23:37:38,738 | INFO     | left removable region: 20
[2025-10-12 19:38:38] 2025-10-12 23:37:38,778 | INFO     | sum of square deviations: 1161425257478.682
[2025-10-12 19:38:38] 2025-10-12 23:37:39,348 | INFO     | sum of deviations: 1502430287856.871
[2025-10-12 19:38:38] 2025-10-12 23:37:39,354 | INFO     | mean x: 1760264394.234385
[2025-10-12 19:38:38] 2025-10-12 23:37:39,355 | INFO     | mean y: 2121351.365743722
[2025-10-12 19:38:38] 2025-10-12 23:37:39,356 | INFO     | -- intersect: -2274972696.23147
[2025-10-12 19:38:38] 2025-10-12 23:37:39,356 | INFO     | intersect: -2274972696.23147
[2025-10-12 19:38:38] 2025-10-12 23:37:39,373 | INFO     | chi2: 2.7715286066395475
[2025-10-12 19:38:38] 2025-10-12 23:37:39,374 | INFO     | -- intersect: -2274972696.23147
[2025-10-12 19:38:38] 2025-10-12 23:37:39,375 | INFO     | current memory leak: 1.29 B/s (using 1553 data points, chi2=2.77)
[2025-10-12 19:38:38] 2025-10-12 23:37:39,392 | INFO     | time since job start (96686s) is within the limit (172800.0s)
[2025-10-12 19:38:38] 2025-10-12 23:37:39,399 | INFO     | could have reported an average CPU frequency of 999 MHz (55 samples)
[2025-10-12 19:38:38] 2025-10-12 23:37:39,400 | INFO     | ..............................
[2025-10-12 19:38:38] 2025-10-12 23:37:39,401 | INFO     | . Timing measurements:
[2025-10-12 19:38:38] 2025-10-12 23:37:39,401 | INFO     | . get job = 2 s
[2025-10-12 19:38:38] 2025-10-12 23:37:39,410 | INFO     | . initial setup = 13 s
[2025-10-12 19:38:38] 2025-10-12 23:37:39,411 | INFO     | . payload setup = 76 s
[2025-10-12 19:38:38] 2025-10-12 23:37:39,411 | INFO     | . stage-in = 1 s
[2025-10-12 19:38:38] 2025-10-12 23:37:39,411 | INFO     | . payload execution = 96370 s
[2025-10-12 19:38:38] 2025-10-12 23:37:39,411 | INFO     | . stage-out = 24 s
[2025-10-12 19:38:38] 2025-10-12 23:37:39,412 | INFO     | . log creation = 9 s
[2025-10-12 19:38:38] 2025-10-12 23:37:39,412 | INFO     | ..............................
[2025-10-12 19:38:38] 2025-10-12 23:37:40,352 | INFO     | 
[2025-10-12 19:38:38] 2025-10-12 23:37:40,353 | INFO     | job summary report
[2025-10-12 19:38:38] 2025-10-12 23:37:40,353 | INFO     | --------------------------------------------------
[2025-10-12 19:38:38] 2025-10-12 23:37:40,353 | INFO     | PanDA job id: 6838773199
[2025-10-12 19:38:38] 2025-10-12 23:37:40,353 | INFO     | task id: 46676269
[2025-10-12 19:38:38] 2025-10-12 23:37:40,354 | INFO     | errors: (none)
[2025-10-12 19:38:38] 2025-10-12 23:37:40,354 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:38:38] 2025-10-12 23:37:40,354 | INFO     | pilot state: finished 
[2025-10-12 19:38:38] 2025-10-12 23:37:40,354 | INFO     | transexitcode: 0
[2025-10-12 19:38:38] 2025-10-12 23:37:40,354 | INFO     | exeerrorcode: 0
[2025-10-12 19:38:38] 2025-10-12 23:37:40,355 | INFO     | exeerrordiag: 
[2025-10-12 19:38:38] 2025-10-12 23:37:40,355 | INFO     | exitcode: 0
[2025-10-12 19:38:38] 2025-10-12 23:37:40,355 | INFO     | exitmsg: OK
[2025-10-12 19:38:38] 2025-10-12 23:37:40,373 | INFO     | cpuconsumptiontime: 125535 s
[2025-10-12 19:38:38] 2025-10-12 23:37:40,374 | INFO     | nevents: 400
[2025-10-12 19:38:38] 2025-10-12 23:37:40,375 | INFO     | neventsw: 0
[2025-10-12 19:38:38] 2025-10-12 23:37:40,375 | INFO     | pid: 3530293
[2025-10-12 19:38:38] 2025-10-12 23:37:40,375 | INFO     | pgrp: 3530293
[2025-10-12 19:38:38] 2025-10-12 23:37:40,375 | INFO     | corecount: 8
[2025-10-12 19:38:38] 2025-10-12 23:37:40,375 | INFO     | event service: False
[2025-10-12 19:38:38] 2025-10-12 23:37:40,376 | INFO     | sizes: {0: 2348029, 2: 2348630, 4: 2348714, 7: 2348742, 8: 2348941, 9: 2348969, 10: 2349125, 23: 2349153, 35: 2349181, 47: 2349209, 61: 2349265, 69: 2349835, 73: 2
[2025-10-12 19:38:38] 2025-10-12 23:37:40,376 | INFO     | --------------------------------------------------
[2025-10-12 19:38:38] 2025-10-12 23:37:40,376 | INFO     | 
[2025-10-12 19:38:38] 2025-10-12 23:37:40,377 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 19:38:38] 2025-10-12 23:37:40,722 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,723 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,723 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,723 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,724 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,724 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,724 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,724 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,725 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,725 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,725 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,725 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,745 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,745 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,745 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,745 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,746 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,746 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:38:38] 2025-10-12 23:37:40,746 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,746 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:38:38] 2025-10-12 23:37:40,747 | INFO     | job 6838773199 has completed (purged errors)
[2025-10-12 19:38:38] 2025-10-12 23:37:40,747 | INFO     | overall cleanup function is called
[2025-10-12 19:38:38] 2025-10-12 23:37:41,968 | INFO     | --- collectZombieJob: --- 10, [3530293]
[2025-10-12 19:38:38] 2025-10-12 23:37:41,968 | INFO     | zombie collector waiting for pid 3530293
[2025-10-12 19:38:38] 2025-10-12 23:37:41,969 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:38:38] 2025-10-12 23:37:41,969 | INFO     | collected zombie processes
[2025-10-12 19:38:38] 2025-10-12 23:37:41,977 | INFO     | will attempt to kill all subprocesses of pid=3530293
[2025-10-12 19:38:38] 2025-10-12 23:37:56,348 | INFO     | PID=3516009 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 19:38:38] 2025-10-12 23:37:56,349 | INFO     | .. there are 37 such processes running
[2025-10-12 19:38:38] 2025-10-12 23:37:56,804 | INFO     | process IDs to be killed: [3530293] (in reverse order)
[2025-10-12 19:38:38] 2025-10-12 23:37:59,270 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:38:38] 2025-10-12 23:37:59,293 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:38:38] 2025-10-12 23:37:59,530 | INFO     | did not find any defunct processes belonging to 3530293
[2025-10-12 19:38:38] 2025-10-12 23:37:59,758 | INFO     | did not find any defunct processes belonging to 3530293
[2025-10-12 19:38:38] 2025-10-12 23:37:59,773 | INFO     | ready for new job
[2025-10-12 19:38:38] 2025-10-12 23:37:59,774 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:38:38] 2025-10-12 23:37:59,827 | INFO     | ***************************************
[2025-10-12 19:38:38] 2025-10-12 23:37:59,828 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:38:38] 2025-10-12 23:37:59,828 | INFO     | ***************************************
[2025-10-12 19:38:38] 2025-10-12 23:37:59,829 | INFO     | 
[2025-10-12 19:38:38] 2025-10-12 23:37:59,937 | INFO     | architecture information:
[2025-10-12 19:38:38] 2025-10-12 23:37:59,947 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:38:38] 2025-10-12 23:38:00,084 | INFO     | cat /etc/os-release:
[2025-10-12 19:38:38] NAME="CentOS Linux"
[2025-10-12 19:38:38] VERSION="7 (Core)"
[2025-10-12 19:38:38] ID="centos"
[2025-10-12 19:38:38] ID_LIKE="rhel fedora"
[2025-10-12 19:38:38] VERSION_ID="7"
[2025-10-12 19:38:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:38:38] ANSI_COLOR="0;31"
[2025-10-12 19:38:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:38:38] HOME_URL="https://www.centos.org/"
[2025-10-12 19:38:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:38:38] 
[2025-10-12 19:38:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:38:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:38:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:38:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:38:38] 
[2025-10-12 19:38:38] 2025-10-12 23:38:00,086 | INFO     | ***************************************
[2025-10-12 19:38:38] 2025-10-12 23:38:00,595 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 19:38:38] 2025-10-12 23:38:00,774 | INFO     | sufficient remaining disk space (94498717696 B)
[2025-10-12 19:38:38] 2025-10-12 23:38:00,775 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:38:38] 2025-10-12 23:38:00,775 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:38:38] 2025-10-12 23:38:00,801 | INFO     | update_server=False
[2025-10-12 19:38:38] 2025-10-12 23:38:00,802 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:38:38] 2025-10-12 23:38:00,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:38:38] 2025-10-12 23:38:00,811 | INFO     | all payload control threads have been joined
[2025-10-12 19:38:38] 2025-10-12 23:38:01,009 | INFO     | all job control threads have been joined
[2025-10-12 19:38:38] 2025-10-12 23:38:01,030 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 19:38:38] 2025-10-12 23:38:01,031 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 19:38:38] 2025-10-12 23:38:01,032 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:38:38] 2025-10-12 23:38:01,032 | INFO     | will abort loop
[2025-10-12 19:38:38] 2025-10-12 23:38:01,714 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:38:38] 2025-10-12 23:38:01,808 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:01,818 | INFO     | [payload] control thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:01,826 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:38:38] 2025-10-12 23:38:01,831 | INFO     | all data control threads have been joined
[2025-10-12 19:38:38] 2025-10-12 23:38:01,953 | INFO     | [job] validate thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:01,954 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:02,016 | INFO     | [job] control thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:02,040 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:02,041 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:02,820 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:02,821 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:02,833 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:02,838 | INFO     | [data] control thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:02,843 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:03,043 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:03,152 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:03,722 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:04,812 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:38:38] 2025-10-12 23:38:22,564 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:38:38] 2025-10-12 23:38:24,096 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140413591975744)>', '<ExcThread(monitor, started 140412865992448)>']
[2025-10-12 19:38:38] 2025-10-12 23:38:29,140 | INFO     | all workflow threads have been joined
[2025-10-12 19:38:38] 2025-10-12 23:38:29,141 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:38:38] 2025-10-12 23:38:29,142 | INFO     | traces error code: 0
[2025-10-12 19:38:38] 2025-10-12 23:38:29,143 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:38:38] 2025-10-12 23:38:33,171 | INFO     | PID=3516009 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:38:38] 2025-10-12 23:38:33,172 | INFO     | .. there are 37 such processes running
[2025-10-12 19:38:38] 2025-10-12 23:38:33,173 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:38:38] 2025-10-12 23:38:33,173 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:38:38] 2025-10-12 23:38:33,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:38:38] 2025-10-12 23:38:33,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:38:38] 2025-10-12 23:38:33,174 | INFO     | [monitor] control thread has ended
[2025-10-12 19:38:38] 2025-10-12 23:38:34,368 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:38:38] 2025-10-12 23:38:34,430 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:38:38] 2025-10-12 23:38:34,496 [wrapper] pilotpid: 3516009
[2025-10-12 19:38:38] 2025-10-12 23:38:34,543 [wrapper] Pilot exit status: 0
[2025-10-12 19:38:38] 2025-10-12 23:38:34,644 [wrapper] pandaids: 6838773199
[2025-10-12 19:38:38] 2025-10-12 23:38:35,893 [wrapper] cleanup supervisor_pilot 3349271 3516010
[2025-10-12 19:38:38] 2025-10-12 23:38:35,957 [wrapper] Test setup, not cleaning
[2025-10-12 19:38:38] 2025-10-12 23:38:35,976 [wrapper] apfmon messages muted
[2025-10-12 19:38:38] 2025-10-12 23:38:36,026 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:38:38] 2025-10-12 23:38:36,086 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:38:38]  *** Error codes and diagnostics ***
[2025-10-12 19:38:38]     "exeErrorCode": 0,
[2025-10-12 19:38:38]     "exeErrorDiag": "",
[2025-10-12 19:38:38]     "pilotErrorCode": 0,
[2025-10-12 19:38:38]     "pilotErrorDiag": "",
[2025-10-12 19:38:38]  *** Listing of results directory ***
[2025-10-12 19:38:38] total 433160
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 14:14 pilot3.tar.gz
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 14:27 queuedata.json
[2025-10-12 19:38:38] -rwx------. 1 boincer umatlas     36292 Oct 11 14:28 runpilot2-wrapper.sh
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas       100 Oct 11 16:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:38:38] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 16:43 run_atlas
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas       105 Oct 11 16:43 job.xml
[2025-10-12 19:38:38] -rw-r--r--. 2 boincer umatlas 219392088 Oct 11 16:44 EVNT.46676267._002516.pool.root.1
[2025-10-12 19:38:38] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 16:44 start_atlas.sh
[2025-10-12 19:38:38] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 16:44 shared
[2025-10-12 19:38:38] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 16:44 input.tar.gz
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas         0 Oct 11 16:44 boinc_lockfile
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 16:44 pandaJob.out
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas    975528 Oct 11 16:45 agis_schedconf.cvmfs.json
[2025-10-12 19:38:38] drwx------. 5 boincer umatlas      4096 Oct 11 16:46 pilot3
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas 200744289 Oct 12 19:32 HITS.46676269._062629.pool.root.1
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas       532 Oct 12 19:33 boinc_task_state.xml
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas      1055 Oct 12 19:35 memory_monitor_summary.json
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas   1560580 Oct 12 19:36 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas   1256858 Oct 12 19:36 log.46676269._062629.job.log.tgz.1
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas      7865 Oct 12 19:37 heartbeat.json
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas        95 Oct 12 19:37 pilot_heartbeat.json
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas      6859 Oct 12 19:38 init_data.xml
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 19:38 boinc_mmap_file
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas        29 Oct 12 19:38 wrapper_checkpoint.txt
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas       823 Oct 12 19:38 pilotlog.txt
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas   8502373 Oct 12 19:38 log.46676269._062629.job.log.1
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas       357 Oct 12 19:38 output.list
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas       620 Oct 12 19:38 runtime_log
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas   9779200 Oct 12 19:38 result.tar.gz
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas      8714 Oct 12 19:38 runtime_log.err
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas       667 Oct 12 19:38 atHKDmvVtR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlFhNDmfpUE8m.diag
[2025-10-12 19:38:38] -rw-r--r--. 1 boincer umatlas     21318 Oct 12 19:38 stderr.txt
[2025-10-12 19:38:38] HITS file was successfully produced:
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas 200744289 Oct 12 19:32 shared/HITS.pool.root.1
[2025-10-12 19:38:38]  *** Contents of shared directory: ***
[2025-10-12 19:38:38] total 420428
[2025-10-12 19:38:38] -rw-r--r--. 2 boincer umatlas 219392088 Oct 11 16:44 ATLAS.root_0
[2025-10-12 19:38:38] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 16:44 start_atlas.sh
[2025-10-12 19:38:38] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 16:44 input.tar.gz
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas 200744289 Oct 12 19:32 HITS.pool.root.1
[2025-10-12 19:38:38] -rw-------. 1 boincer umatlas   9779200 Oct 12 19:38 result.tar.gz
19:38:40 (3508768): run_atlas exited; CPU time 135284.043405
19:38:40 (3508768): called boinc_finish(0)

</stderr_txt>
]]>

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