Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:36:56 (2931160): wrapper (7.7.26015): starting
16:36:56 (2931160): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 16:36:56] Arguments: --nthreads 8
[2025-10-11 16:36:56] Threads: 8
[2025-10-11 16:36:56] Checking for CVMFS
[2025-10-11 16:36:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 16:36:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 16:36:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 16:36:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 16:36:57] 2.13.1.0 4140 3286 71360 151595 0 57 34116584 39288832 3664 16776704 0 11298538 99.998 111186 33489 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 16:36:57] CVMFS is ok
[2025-10-11 16:36:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:36:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 16:36:57] Further information can be found at the LHC@home message board.
[2025-10-11 16:36:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:36:57] Checking for apptainer binary...
[2025-10-11 16:36:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 16:36:57] Running /usr/bin/apptainer --version
[2025-10-11 16:36:57] apptainer version 1.4.3-1.el9
[2025-10-11 16:36:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:36:57] c-210-16.aglt2.org
[2025-10-11 16:36:57] apptainer works
[2025-10-11 16:36:57] Set ATHENA_PROC_NUMBER=8
[2025-10-11 16:36:57] Set ATHENA_CORE_NUMBER=8
[2025-10-11 16:36:57] Starting ATLAS job with PandaID=6838199847
[2025-10-11 16:36:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 18:16:28]  *** The last 200 lines of the pilot log: ***
[2025-10-11 18:16:28]  replicas=None
[2025-10-11 18:16:28]  scope=mc23_13p6TeV
[2025-10-11 18:16:28]  status=None
[2025-10-11 18:16:28]  status_code=0
[2025-10-11 18:16:28]  storage_token=
[2025-10-11 18:16:28]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6838199847/log.46676269._053598.job.log.tgz.1
[2025-10-11 18:16:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/f2/log.46676269._053598.job.log.tgz.1
[2025-10-11 18:16:28]  workdir=None
[2025-10-11 18:16:28] ]
[2025-10-11 18:16:28] 2025-10-11 22:15:50,322 | INFO     | monitor loop #441: job 0:6838199847 is in state 'stageout'
[2025-10-11 18:16:28] 2025-10-11 22:15:50,333 | WARNING  | aborting job monitor tasks since payload process 2941219 is not running
[2025-10-11 18:16:28] 2025-10-11 22:15:50,338 | INFO     | transferring file log.46676269._053598.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6838199847/log.46676269._053598.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 18:16:28] 2025-10-11 22:15:50,338 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6838199847/log.46676269._053598.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._053598.job
[2025-10-11 18:16:28] 2025-10-11 22:15:50,354 | INFO     | adding to output.list: log.46676269._053598.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/f2/log.46676269._053598.job.log.tg
[2025-10-11 18:16:28] 2025-10-11 22:15:50,355 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 18:16:28] 2025-10-11 22:15:50,355 | INFO     | summary of transferred files:
[2025-10-11 18:16:28] 2025-10-11 22:15:50,356 | INFO     |  -- lfn=log.46676269._053598.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 18:16:28] 2025-10-11 22:15:50,356 | INFO     | stage-out finished correctly
[2025-10-11 18:16:28] 2025-10-11 22:15:50,506 | INFO     | time since job start (5922s) is within the limit (172800.0s)
[2025-10-11 18:16:28] 2025-10-11 22:15:51,217 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 18:16:28] 2025-10-11 22:15:51,319 | INFO     | job 6838199847 has state=finished
[2025-10-11 18:16:28] 2025-10-11 22:15:51,319 | INFO     | preparing for final server update for job 6838199847 in state='finished'
[2025-10-11 18:16:28] 2025-10-11 22:15:51,320 | INFO     | this job has now completed (state=finished)
[2025-10-11 18:16:28] 2025-10-11 22:15:51,320 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 18:16:28] 2025-10-11 22:15:51,320 | INFO     | log transfer has been attempted: DONE
[2025-10-11 18:16:28] 2025-10-11 22:15:51,320 | INFO     | job 6838199847 has finished - writing final server update
[2025-10-11 18:16:28] 2025-10-11 22:15:51,320 | INFO     | total number of processed events: 400 (read)
[2025-10-11 18:16:28] 2025-10-11 22:15:51,321 | INFO     | executing command: lscpu
[2025-10-11 18:16:28] 2025-10-11 22:15:51,362 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 18:16:28] 2025-10-11 22:15:52,511 | INFO     | time since job start (5924s) is within the limit (172800.0s)
[2025-10-11 18:16:28] 2025-10-11 22:15:52,840 | INFO     | monitor loop #442: job 0:6838199847 is in state 'finished'
[2025-10-11 18:16:28] 2025-10-11 22:15:52,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 18:16:28] 2025-10-11 22:15:54,519 | INFO     | time since job start (5926s) is within the limit (172800.0s)
[2025-10-11 18:16:28] 2025-10-11 22:15:54,898 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 18:16:28] 2025-10-11 22:15:54,905 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1598499999996
[2025-10-11 18:16:28] 2025-10-11 22:15:54,911 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838199847/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 18:16:28] 2025-10-11 22:15:54,912 | INFO     | extracted standard info from prmon json
[2025-10-11 18:16:28] 2025-10-11 22:15:54,912 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 18:16:28] 2025-10-11 22:15:54,913 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 18:16:28] 2025-10-11 22:15:54,913 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 18:16:28] 2025-10-11 22:15:54,913 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 18:16:28] 2025-10-11 22:15:54,915 | INFO     | fitting pss+swap vs Time
[2025-10-11 18:16:28] 2025-10-11 22:15:54,916 | INFO     | sum of square deviations: 226022842.5
[2025-10-11 18:16:28] 2025-10-11 22:15:54,916 | INFO     | sum of deviations: -12628383236.000002
[2025-10-11 18:16:28] 2025-10-11 22:15:54,916 | INFO     | mean x: 1760218071.5
[2025-10-11 18:16:28] 2025-10-11 22:15:54,917 | INFO     | mean y: 2585989.1333333333
[2025-10-11 18:16:28] 2025-10-11 22:15:54,917 | INFO     | -- intersect: 98349762495.57361
[2025-10-11 18:16:28] 2025-10-11 22:15:54,917 | INFO     | intersect: 98349762495.57361
[2025-10-11 18:16:28] 2025-10-11 22:15:54,917 | INFO     | chi2: 0.07743899627751823
[2025-10-11 18:16:28] 2025-10-11 22:15:54,917 | INFO     | -- intersect: 98349762495.57361
[2025-10-11 18:16:28] 2025-10-11 22:15:54,917 | INFO     | current memory leak: -55.87 B/s (using 90 data points, chi2=0.08)
[2025-10-11 18:16:28] 2025-10-11 22:15:54,918 | INFO     | could have reported an average CPU frequency of 2600 MHz (7 samples)
[2025-10-11 18:16:28] 2025-10-11 22:15:54,918 | INFO     | ..............................
[2025-10-11 18:16:28] 2025-10-11 22:15:54,918 | INFO     | . Timing measurements:
[2025-10-11 18:16:28] 2025-10-11 22:15:54,918 | INFO     | . get job = 0 s
[2025-10-11 18:16:28] 2025-10-11 22:15:54,918 | INFO     | . initial setup = 2 s
[2025-10-11 18:16:28] 2025-10-11 22:15:54,918 | INFO     | . payload setup = 5 s
[2025-10-11 18:16:28] 2025-10-11 22:15:54,918 | INFO     | . stage-in = 0 s
[2025-10-11 18:16:28] 2025-10-11 22:15:54,919 | INFO     | . payload execution = 5896 s
[2025-10-11 18:16:28] 2025-10-11 22:15:54,919 | INFO     | . stage-out = 0 s
[2025-10-11 18:16:28] 2025-10-11 22:15:54,919 | INFO     | . log creation = 0 s
[2025-10-11 18:16:28] 2025-10-11 22:15:54,919 | INFO     | ..............................
[2025-10-11 18:16:28] 2025-10-11 22:15:55,024 | INFO     | 
[2025-10-11 18:16:28] 2025-10-11 22:15:55,024 | INFO     | job summary report
[2025-10-11 18:16:28] 2025-10-11 22:15:55,024 | INFO     | --------------------------------------------------
[2025-10-11 18:16:28] 2025-10-11 22:15:55,024 | INFO     | PanDA job id: 6838199847
[2025-10-11 18:16:28] 2025-10-11 22:15:55,024 | INFO     | task id: 46676269
[2025-10-11 18:16:28] 2025-10-11 22:15:55,024 | INFO     | errors: (none)
[2025-10-11 18:16:28] 2025-10-11 22:15:55,024 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 18:16:28] 2025-10-11 22:15:55,024 | INFO     | pilot state: finished 
[2025-10-11 18:16:28] 2025-10-11 22:15:55,025 | INFO     | transexitcode: 0
[2025-10-11 18:16:28] 2025-10-11 22:15:55,025 | INFO     | exeerrorcode: 0
[2025-10-11 18:16:28] 2025-10-11 22:15:55,025 | INFO     | exeerrordiag: 
[2025-10-11 18:16:28] 2025-10-11 22:15:55,025 | INFO     | exitcode: 0
[2025-10-11 18:16:28] 2025-10-11 22:15:55,025 | INFO     | exitmsg: OK
[2025-10-11 18:16:28] 2025-10-11 22:15:55,025 | INFO     | cpuconsumptiontime: 42610 s
[2025-10-11 18:16:28] 2025-10-11 22:15:55,025 | INFO     | nevents: 400
[2025-10-11 18:16:28] 2025-10-11 22:15:55,025 | INFO     | neventsw: 0
[2025-10-11 18:16:28] 2025-10-11 22:15:55,025 | INFO     | pid: 2941219
[2025-10-11 18:16:28] 2025-10-11 22:15:55,026 | INFO     | pgrp: 2941219
[2025-10-11 18:16:28] 2025-10-11 22:15:55,026 | INFO     | corecount: 8
[2025-10-11 18:16:28] 2025-10-11 22:15:55,026 | INFO     | event service: False
[2025-10-11 18:16:28] 2025-10-11 22:15:55,026 | INFO     | sizes: {0: 2348856, 1: 2348856, 4: 2349146, 11: 2349174, 5905: 2375990, 5907: 2384988, 5908: 2385172, 5912: 2385366}
[2025-10-11 18:16:28] 2025-10-11 22:15:55,026 | INFO     | --------------------------------------------------
[2025-10-11 18:16:28] 2025-10-11 22:15:55,026 | INFO     | 
[2025-10-11 18:16:28] 2025-10-11 22:15:55,026 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 18:16:28] 2025-10-11 22:15:55,043 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,044 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,044 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,044 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,044 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,044 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,044 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,044 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,045 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,045 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,045 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,045 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,045 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,045 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,045 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,045 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,046 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,046 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 18:16:28] 2025-10-11 22:15:55,046 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,046 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 18:16:28] 2025-10-11 22:15:55,046 | INFO     | job 6838199847 has completed (purged errors)
[2025-10-11 18:16:28] 2025-10-11 22:15:55,046 | INFO     | overall cleanup function is called
[2025-10-11 18:16:28] 2025-10-11 22:15:55,794 | INFO     | PID=2934825 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 18:16:28] 2025-10-11 22:15:55,794 | INFO     | .. there are 5 such processes running
[2025-10-11 18:16:28] 2025-10-11 22:15:56,055 | INFO     | --- collectZombieJob: --- 10, [2941219]
[2025-10-11 18:16:28] 2025-10-11 22:15:56,055 | INFO     | zombie collector waiting for pid 2941219
[2025-10-11 18:16:28] 2025-10-11 22:15:56,055 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 18:16:28] 2025-10-11 22:15:56,055 | INFO     | collected zombie processes
[2025-10-11 18:16:28] 2025-10-11 22:15:56,055 | INFO     | will attempt to kill all subprocesses of pid=2941219
[2025-10-11 18:16:28] 2025-10-11 22:15:56,281 | INFO     | process IDs to be killed: [2941219] (in reverse order)
[2025-10-11 18:16:28] 2025-10-11 22:15:56,341 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 18:16:28] 2025-10-11 22:15:56,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 18:16:28] 2025-10-11 22:15:56,348 | INFO     | did not find any defunct processes belonging to 2941219
[2025-10-11 18:16:28] 2025-10-11 22:15:56,353 | INFO     | did not find any defunct processes belonging to 2941219
[2025-10-11 18:16:28] 2025-10-11 22:15:56,353 | INFO     | ready for new job
[2025-10-11 18:16:28] 2025-10-11 22:15:56,354 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 18:16:28] 2025-10-11 22:15:56,355 | INFO     | ***************************************
[2025-10-11 18:16:28] 2025-10-11 22:15:56,355 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 18:16:28] 2025-10-11 22:15:56,355 | INFO     | ***************************************
[2025-10-11 18:16:28] 2025-10-11 22:15:56,356 | INFO     | 
[2025-10-11 18:16:28] 2025-10-11 22:15:56,357 | INFO     | architecture information:
[2025-10-11 18:16:28] 2025-10-11 22:15:56,358 | INFO     | executing command: cat /etc/os-release
[2025-10-11 18:16:28] 2025-10-11 22:15:56,369 | INFO     | cat /etc/os-release:
[2025-10-11 18:16:28] NAME="CentOS Linux"
[2025-10-11 18:16:28] VERSION="7 (Core)"
[2025-10-11 18:16:28] ID="centos"
[2025-10-11 18:16:28] ID_LIKE="rhel fedora"
[2025-10-11 18:16:28] VERSION_ID="7"
[2025-10-11 18:16:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 18:16:28] ANSI_COLOR="0;31"
[2025-10-11 18:16:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 18:16:28] HOME_URL="https://www.centos.org/"
[2025-10-11 18:16:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 18:16:28] 
[2025-10-11 18:16:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 18:16:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 18:16:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 18:16:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 18:16:28] 
[2025-10-11 18:16:28] 2025-10-11 22:15:56,370 | INFO     | ***************************************
[2025-10-11 18:16:28] 2025-10-11 22:15:56,871 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 18:16:28] 2025-10-11 22:15:56,884 | INFO     | sufficient remaining disk space (51630833664 B)
[2025-10-11 18:16:28] 2025-10-11 22:15:56,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 18:16:28] 2025-10-11 22:15:56,884 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 18:16:28] 2025-10-11 22:15:56,885 | INFO     | update_server=False
[2025-10-11 18:16:28] 2025-10-11 22:15:56,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 18:16:28] 2025-10-11 22:15:56,885 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 18:16:28] 2025-10-11 22:15:56,885 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:16:28] 2025-10-11 22:15:56,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:16:28] 2025-10-11 22:15:56,886 | INFO     | aborting loop
[2025-10-11 18:16:28] 2025-10-11 22:15:57,324 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 18:16:28] 2025-10-11 22:15:57,503 | INFO     | all payload control threads have been joined
[2025-10-11 18:16:28] 2025-10-11 22:15:57,890 | INFO     | [job] retrieve thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:57,890 | INFO     | [job] queue monitor thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:57,891 | INFO     | [job] job monitor thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:57,950 | INFO     | all data control threads have been joined
[2025-10-11 18:16:28] 2025-10-11 22:15:58,025 | INFO     | [job] validate thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:58,029 | INFO     | [payload] failed_post thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:58,286 | INFO     | all job control threads have been joined
[2025-10-11 18:16:28] 2025-10-11 22:15:58,471 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:58,490 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:58,504 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:58,508 | INFO     | [payload] control thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:58,557 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:58,891 | INFO     | [data] copytool_out thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:58,952 | INFO     | [data] control thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:59,097 | INFO     | [payload] validate_post thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:59,290 | INFO     | [job] control thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:15:59,365 | INFO     | [data] copytool_in thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:16:01,331 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 18:16:28] 2025-10-11 22:16:17,085 | INFO     | [monitor] cgroup control has ended
[2025-10-11 18:16:28] 2025-10-11 22:16:17,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140254488917824)>', '<ExcThread(monitor, started 140253994133248)>']
[2025-10-11 18:16:28] 2025-10-11 22:16:22,411 | INFO     | all workflow threads have been joined
[2025-10-11 18:16:28] 2025-10-11 22:16:22,411 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 18:16:28] 2025-10-11 22:16:22,412 | INFO     | traces error code: 0
[2025-10-11 18:16:28] 2025-10-11 22:16:22,412 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 18:16:28] 2025-10-11 22:16:28,134 | INFO     | PID=2934825 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 18:16:28] 2025-10-11 22:16:28,135 | INFO     | .. there are 5 such processes running
[2025-10-11 18:16:28] 2025-10-11 22:16:28,135 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 18:16:28] 2025-10-11 22:16:28,135 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 18:16:28] 2025-10-11 22:16:28,135 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 18:16:28] 2025-10-11 22:16:28,135 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 18:16:28] 2025-10-11 22:16:28,135 | CRITICAL | thread 'MainThread' is not alive
[2025-10-11 18:16:28] 2025-10-11 22:16:28,135 | INFO     | [monitor] control thread has ended
[2025-10-11 18:16:28] 2025-10-11 22:16:28,237 [wrapper] ==== pilot stdout END ====
[2025-10-11 18:16:28] 2025-10-11 22:16:28,239 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 18:16:28] 2025-10-11 22:16:28,242 [wrapper] pilotpid: 2934825
[2025-10-11 18:16:28] 2025-10-11 22:16:28,244 [wrapper] Pilot exit status: 0
[2025-10-11 18:16:28] 2025-10-11 22:16:28,254 [wrapper] pandaids: 6838199847
[2025-10-11 18:16:28] 2025-10-11 22:16:28,294 [wrapper] cleanup supervisor_pilot 3134025 2934826
[2025-10-11 18:16:28] 2025-10-11 22:16:28,297 [wrapper] Test setup, not cleaning
[2025-10-11 18:16:28] 2025-10-11 22:16:28,299 [wrapper] apfmon messages muted
[2025-10-11 18:16:28] 2025-10-11 22:16:28,302 [wrapper] ==== wrapper stdout END ====
[2025-10-11 18:16:28] 2025-10-11 22:16:28,304 [wrapper] ==== wrapper stderr END ====
[2025-10-11 18:16:28]  *** Error codes and diagnostics ***
[2025-10-11 18:16:28]     "exeErrorCode": 0,
[2025-10-11 18:16:28]     "exeErrorDiag": "",
[2025-10-11 18:16:28]     "pilotErrorCode": 0,
[2025-10-11 18:16:28]     "pilotErrorDiag": "",
[2025-10-11 18:16:28]  *** Listing of results directory ***
[2025-10-11 18:16:28] total 411420
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 03:02 pilot3.tar.gz
[2025-10-11 18:16:28] -rwx------. 1 boincer umatlas     36292 Oct 11 03:39 runpilot2-wrapper.sh
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 03:39 queuedata.json
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas       100 Oct 11 16:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 18:16:28] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 16:36 run_atlas
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas       105 Oct 11 16:36 job.xml
[2025-10-11 18:16:28] -rw-r--r--. 2 boincer umatlas 224085842 Oct 11 16:36 EVNT.46676267._002151.pool.root.1
[2025-10-11 18:16:28] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 16:36 start_atlas.sh
[2025-10-11 18:16:28] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 16:36 shared
[2025-10-11 18:16:28] -rw-r--r--. 2 boincer umatlas    569679 Oct 11 16:36 input.tar.gz
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas         0 Oct 11 16:36 boinc_lockfile
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas      2549 Oct 11 16:36 pandaJob.out
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas    975528 Oct 11 16:37 agis_schedconf.cvmfs.json
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas   1560580 Oct 11 16:37 agis_ddmendpoints.agis.ALL.json
[2025-10-11 18:16:28] drwx------. 5 boincer umatlas      4096 Oct 11 16:37 pilot3
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas      6659 Oct 11 18:09 init_data.xml
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas       529 Oct 11 18:15 boinc_task_state.xml
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas 190889955 Oct 11 18:15 HITS.46676269._053598.pool.root.1
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas        95 Oct 11 18:15 pilot_heartbeat.json
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas      1034 Oct 11 18:15 memory_monitor_summary.json
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas    344936 Oct 11 18:15 log.46676269._053598.job.log.tgz.1
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas      7814 Oct 11 18:15 heartbeat.json
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 18:16 boinc_mmap_file
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas        27 Oct 11 18:16 wrapper_checkpoint.txt
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas       892 Oct 11 18:16 pilotlog.txt
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas    866178 Oct 11 18:16 log.46676269._053598.job.log.1
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas       357 Oct 11 18:16 output.list
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas       620 Oct 11 18:16 runtime_log
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas   1228800 Oct 11 18:16 result.tar.gz
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas       653 Oct 11 18:16 Y3hNDm7MjR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmrSRMDmIgzNhn.diag
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas      8703 Oct 11 18:16 runtime_log.err
[2025-10-11 18:16:28] -rw-r--r--. 1 boincer umatlas     21886 Oct 11 18:16 stderr.txt
[2025-10-11 18:16:28] HITS file was successfully produced:
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas 190889955 Oct 11 18:15 shared/HITS.pool.root.1
[2025-10-11 18:16:28]  *** Contents of shared directory: ***
[2025-10-11 18:16:28] total 407032
[2025-10-11 18:16:28] -rw-r--r--. 2 boincer umatlas 224085842 Oct 11 16:36 ATLAS.root_0
[2025-10-11 18:16:28] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 16:36 start_atlas.sh
[2025-10-11 18:16:28] -rw-r--r--. 2 boincer umatlas    569679 Oct 11 16:36 input.tar.gz
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas 190889955 Oct 11 18:15 HITS.pool.root.1
[2025-10-11 18:16:28] -rw-------. 1 boincer umatlas   1228800 Oct 11 18:16 result.tar.gz
18:16:29 (2931160): run_atlas exited; CPU time 42730.800294
18:16:29 (2931160): called boinc_finish(0)

</stderr_txt>
]]>

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