Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:34:24 (2278): wrapper (7.7.26015): starting
16:34:24 (2278): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 16:34:24] Arguments: --nthreads 8
[2025-10-11 16:34:24] Threads: 8
[2025-10-11 16:34:24] Checking for CVMFS
[2025-10-11 16:34:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 16:34:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 16:34:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 16:34:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 16:34:24] 2.11.2.0 31396 51903 131272 151595 0 58 15917409 18432000 1833 130560 0 45653848 99.974 2219553 39279 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 16:34:24] CVMFS is ok
[2025-10-11 16:34:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:34:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 16:34:24] Further information can be found at the LHC@home message board.
[2025-10-11 16:34:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:34:24] Checking for apptainer binary...
[2025-10-11 16:34:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 16:34:24] Running /usr/bin/apptainer --version
[2025-10-11 16:34:24] apptainer version 1.3.2-1.el7
[2025-10-11 16:34:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:34:25] c-206-10.aglt2.org
[2025-10-11 16:34:25] apptainer works
[2025-10-11 16:34:25] Set ATHENA_PROC_NUMBER=8
[2025-10-11 16:34:25] Set ATHENA_CORE_NUMBER=8
[2025-10-11 16:34:25] Starting ATLAS job with PandaID=6838452247
[2025-10-11 16:34:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:09:28 (10686): wrapper (7.7.26015): starting
19:09:28 (10686): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 19:09:28] Arguments: --nthreads 8
[2025-10-11 19:09:28] Threads: 8
[2025-10-11 19:09:28] This job has been restarted, cleaning up previous attempt
[2025-10-11 19:09:28] Checking for CVMFS
[2025-10-11 19:09:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 19:09:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 19:09:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 19:09:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 19:09:28] 2.11.2.0 31396 52058 131096 151599 1 39 15939945 18432000 1 130560 0 45918679 99.974 2224936 39256 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 19:09:28] CVMFS is ok
[2025-10-11 19:09:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 19:09:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 19:09:28] Further information can be found at the LHC@home message board.
[2025-10-11 19:09:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 19:09:28] Checking for apptainer binary...
[2025-10-11 19:09:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 19:09:28] Running /usr/bin/apptainer --version
[2025-10-11 19:09:29] apptainer version 1.3.2-1.el7
[2025-10-11 19:09:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 19:09:30] c-206-10.aglt2.org
[2025-10-11 19:09:30] apptainer works
[2025-10-11 19:09:30] Set ATHENA_PROC_NUMBER=8
[2025-10-11 19:09:30] Set ATHENA_CORE_NUMBER=8
[2025-10-11 19:09:30] Starting ATLAS job with PandaID=6838452247
[2025-10-11 19:09:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:15:05]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:15:05] 2025-10-12 02:14:29,949 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 22:15:05] 2025-10-12 02:14:29,949 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 22:15:05] 2025-10-12 02:14:29,952 | INFO     | fitting pss+swap vs Time
[2025-10-11 22:15:05] 2025-10-12 02:14:29,952 | INFO     | sum of square deviations: 1869302025.5
[2025-10-11 22:15:05] 2025-10-12 02:14:29,953 | INFO     | sum of deviations: 22409521535.500008
[2025-10-11 22:15:05] 2025-10-12 02:14:29,953 | INFO     | mean x: 1760229728.5
[2025-10-11 22:15:05] 2025-10-12 02:14:29,954 | INFO     | mean y: 2453178.730769231
[2025-10-11 22:15:05] 2025-10-12 02:14:29,954 | INFO     | -- intersect: -21099490471.97335
[2025-10-11 22:15:05] 2025-10-12 02:14:29,954 | INFO     | intersect: -21099490471.97335
[2025-10-11 22:15:05] 2025-10-12 02:14:29,954 | INFO     | chi2: 2.0997871985195364
[2025-10-11 22:15:05] 2025-10-12 02:14:29,954 | INFO     | sum of square deviations: 1719429448.0
[2025-10-11 22:15:05] 2025-10-12 02:14:29,955 | INFO     | sum of deviations: 33832952282.000004
[2025-10-11 22:15:05] 2025-10-12 02:14:29,955 | INFO     | mean x: 1760229576.0
[2025-10-11 22:15:05] 2025-10-12 02:14:29,955 | INFO     | mean y: 2464521.6101694917
[2025-10-11 22:15:05] 2025-10-12 02:14:29,955 | INFO     | -- intersect: -34633305686.60898
[2025-10-11 22:15:05] 2025-10-12 02:14:29,956 | INFO     | intersect: -34633305686.60898
[2025-10-11 22:15:05] 2025-10-12 02:14:29,956 | INFO     | chi2: 1.2740422230476944
[2025-10-11 22:15:05] 2025-10-12 02:14:29,956 | INFO     | current chi2=1.2740422230476944 (change=39.32517428690092 %)
[2025-10-11 22:15:05] 2025-10-12 02:14:29,956 | INFO     | sum of square deviations: 1577789583.0
[2025-10-11 22:15:05] 2025-10-12 02:14:29,957 | INFO     | sum of deviations: 32621984704.500004
[2025-10-11 22:15:05] 2025-10-12 02:14:29,957 | INFO     | mean x: 1760229423.5
[2025-10-11 22:15:05] 2025-10-12 02:14:29,957 | INFO     | mean y: 2463217.726744186
[2025-10-11 22:15:05] 2025-10-12 02:14:29,957 | INFO     | -- intersect: -36391602219.46905
[2025-10-11 22:15:05] 2025-10-12 02:14:29,957 | INFO     | intersect: -36391602219.46905
[2025-10-11 22:15:05] 2025-10-12 02:14:29,958 | INFO     | chi2: 1.2742197381445604
[2025-10-11 22:15:05] 2025-10-12 02:14:29,958 | INFO     | current chi2=1.2742197381445604 (change=-0.013933219296396567 %)
[2025-10-11 22:15:05] 2025-10-12 02:14:29,958 | INFO     | right removable region: 171
[2025-10-11 22:15:05] 2025-10-12 02:14:29,958 | INFO     | sum of square deviations: 1719429448.0
[2025-10-11 22:15:05] 2025-10-12 02:14:29,959 | INFO     | sum of deviations: -3150278876.000002
[2025-10-11 22:15:05] 2025-10-12 02:14:29,959 | INFO     | mean x: 1760229881.0
[2025-10-11 22:15:05] 2025-10-12 02:14:29,959 | INFO     | mean y: 2478874.5875706216
[2025-10-11 22:15:05] 2025-10-12 02:14:29,959 | INFO     | -- intersect: 3227510885.9145613
[2025-10-11 22:15:05] 2025-10-12 02:14:29,959 | INFO     | intersect: 3227510885.9145613
[2025-10-11 22:15:05] 2025-10-12 02:14:29,960 | INFO     | chi2: 0.8492701998737988
[2025-10-11 22:15:05] 2025-10-12 02:14:29,960 | INFO     | current chi2=0.8492701998737988 (change=59.554463401216076 %)
[2025-10-11 22:15:05] 2025-10-12 02:14:29,960 | INFO     | sum of square deviations: 1577789583.0
[2025-10-11 22:15:05] 2025-10-12 02:14:29,961 | INFO     | sum of deviations: -4832110699.5
[2025-10-11 22:15:05] 2025-10-12 02:14:29,961 | INFO     | mean x: 1760230033.5
[2025-10-11 22:15:05] 2025-10-12 02:14:29,961 | INFO     | mean y: 2480677.668604651
[2025-10-11 22:15:05] 2025-10-12 02:14:29,961 | INFO     | -- intersect: 5393330300.521384
[2025-10-11 22:15:05] 2025-10-12 02:14:29,961 | INFO     | intersect: 5393330300.521384
[2025-10-11 22:15:05] 2025-10-12 02:14:29,962 | INFO     | chi2: 0.8472174772109121
[2025-10-11 22:15:05] 2025-10-12 02:14:29,962 | INFO     | current chi2=0.8472174772109121 (change=0.24170430838050486 %)
[2025-10-11 22:15:05] 2025-10-12 02:14:29,962 | INFO     | left removable region: 20
[2025-10-11 22:15:05] 2025-10-12 02:14:29,962 | INFO     | sum of square deviations: 1067554900.0
[2025-10-11 22:15:05] 2025-10-12 02:14:29,963 | INFO     | sum of deviations: 4159790507.0000005
[2025-10-11 22:15:05] 2025-10-12 02:14:29,963 | INFO     | mean x: 1760230003.0
[2025-10-11 22:15:05] 2025-10-12 02:14:29,963 | INFO     | mean y: 2495700.6291390727
[2025-10-11 22:15:05] 2025-10-12 02:14:29,963 | INFO     | -- intersect: -6856344117.928185
[2025-10-11 22:15:05] 2025-10-12 02:14:29,963 | INFO     | intersect: -6856344117.928185
[2025-10-11 22:15:05] 2025-10-12 02:14:29,963 | INFO     | chi2: 0.0005711499592655144
[2025-10-11 22:15:05] 2025-10-12 02:14:29,964 | INFO     | -- intersect: -6856344117.928185
[2025-10-11 22:15:05] 2025-10-12 02:14:29,964 | INFO     | current memory leak: 3.90 B/s (using 151 data points, chi2=0.00)
[2025-10-11 22:15:05] 2025-10-12 02:14:29,964 | INFO     | could have reported an average CPU frequency of 2298 MHz (10 samples)
[2025-10-11 22:15:05] 2025-10-12 02:14:29,964 | INFO     | ..............................
[2025-10-11 22:15:05] 2025-10-12 02:14:29,964 | INFO     | . Timing measurements:
[2025-10-11 22:15:05] 2025-10-12 02:14:29,964 | INFO     | . get job = 0 s
[2025-10-11 22:15:05] 2025-10-12 02:14:29,964 | INFO     | . initial setup = 1 s
[2025-10-11 22:15:05] 2025-10-12 02:14:29,965 | INFO     | . payload setup = 6 s
[2025-10-11 22:15:05] 2025-10-12 02:14:29,965 | INFO     | . stage-in = 0 s
[2025-10-11 22:15:05] 2025-10-12 02:14:29,965 | INFO     | . payload execution = 11056 s
[2025-10-11 22:15:05] 2025-10-12 02:14:29,965 | INFO     | . stage-out = 1 s
[2025-10-11 22:15:05] 2025-10-12 02:14:29,965 | INFO     | . log creation = 0 s
[2025-10-11 22:15:05] 2025-10-12 02:14:29,965 | INFO     | ..............................
[2025-10-11 22:15:05] 2025-10-12 02:14:30,349 | INFO     | time since job start (11088s) is within the limit (172800.0s)
[2025-10-11 22:15:05] 2025-10-12 02:14:30,380 | INFO     | 
[2025-10-11 22:15:05] 2025-10-12 02:14:30,381 | INFO     | job summary report
[2025-10-11 22:15:05] 2025-10-12 02:14:30,381 | INFO     | --------------------------------------------------
[2025-10-11 22:15:05] 2025-10-12 02:14:30,381 | INFO     | PanDA job id: 6838452247
[2025-10-11 22:15:05] 2025-10-12 02:14:30,381 | INFO     | task id: 46676269
[2025-10-11 22:15:05] 2025-10-12 02:14:30,381 | INFO     | errors: (none)
[2025-10-11 22:15:05] 2025-10-12 02:14:30,381 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 22:15:05] 2025-10-12 02:14:30,381 | INFO     | pilot state: finished 
[2025-10-11 22:15:05] 2025-10-12 02:14:30,381 | INFO     | transexitcode: 0
[2025-10-11 22:15:05] 2025-10-12 02:14:30,381 | INFO     | exeerrorcode: 0
[2025-10-11 22:15:05] 2025-10-12 02:14:30,382 | INFO     | exeerrordiag: 
[2025-10-11 22:15:05] 2025-10-12 02:14:30,382 | INFO     | exitcode: 0
[2025-10-11 22:15:05] 2025-10-12 02:14:30,382 | INFO     | exitmsg: OK
[2025-10-11 22:15:05] 2025-10-12 02:14:30,382 | INFO     | cpuconsumptiontime: 84868 s
[2025-10-11 22:15:05] 2025-10-12 02:14:30,382 | INFO     | nevents: 400
[2025-10-11 22:15:05] 2025-10-12 02:14:30,382 | INFO     | neventsw: 0
[2025-10-11 22:15:05] 2025-10-12 02:14:30,382 | INFO     | pid: 9124
[2025-10-11 22:15:05] 2025-10-12 02:14:30,382 | INFO     | pgrp: 9124
[2025-10-11 22:15:05] 2025-10-12 02:14:30,382 | INFO     | corecount: 8
[2025-10-11 22:15:05] 2025-10-12 02:14:30,382 | INFO     | event service: False
[2025-10-11 22:15:05] 2025-10-12 02:14:30,383 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 11: 2349203, 11066: 2378328, 11068: 2387326, 11069: 2387510, 11072: 2387704}
[2025-10-11 22:15:05] 2025-10-12 02:14:30,383 | INFO     | --------------------------------------------------
[2025-10-11 22:15:05] 2025-10-12 02:14:30,383 | INFO     | 
[2025-10-11 22:15:05] 2025-10-12 02:14:30,383 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 22:15:05] 2025-10-12 02:14:30,398 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,398 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,399 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,399 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,399 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,399 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,399 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,399 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,399 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,399 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,399 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,400 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,400 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,400 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,400 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,400 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,400 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,400 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 22:15:05] 2025-10-12 02:14:30,400 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,400 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 22:15:05] 2025-10-12 02:14:30,401 | INFO     | job 6838452247 has completed (purged errors)
[2025-10-11 22:15:05] 2025-10-12 02:14:30,401 | INFO     | overall cleanup function is called
[2025-10-11 22:15:05] 2025-10-12 02:14:31,407 | INFO     | --- collectZombieJob: --- 10, [9124]
[2025-10-11 22:15:05] 2025-10-12 02:14:31,408 | INFO     | zombie collector waiting for pid 9124
[2025-10-11 22:15:05] 2025-10-12 02:14:31,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:15:05] 2025-10-12 02:14:31,408 | INFO     | collected zombie processes
[2025-10-11 22:15:05] 2025-10-12 02:14:31,408 | INFO     | will attempt to kill all subprocesses of pid=9124
[2025-10-11 22:15:05] 2025-10-12 02:14:31,511 | INFO     | process IDs to be killed: [9124] (in reverse order)
[2025-10-11 22:15:05] 2025-10-12 02:14:31,554 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:15:05] 2025-10-12 02:14:31,554 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:15:05] 2025-10-12 02:14:31,557 | INFO     | did not find any defunct processes belonging to 9124
[2025-10-11 22:15:05] 2025-10-12 02:14:31,559 | INFO     | did not find any defunct processes belonging to 9124
[2025-10-11 22:15:05] 2025-10-12 02:14:31,559 | INFO     | ready for new job
[2025-10-11 22:15:05] 2025-10-12 02:14:31,559 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:15:05] 2025-10-12 02:14:31,561 | INFO     | ***************************************
[2025-10-11 22:15:05] 2025-10-12 02:14:31,561 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 22:15:05] 2025-10-12 02:14:31,561 | INFO     | ***************************************
[2025-10-11 22:15:05] 2025-10-12 02:14:31,561 | INFO     | 
[2025-10-11 22:15:05] 2025-10-12 02:14:31,562 | INFO     | architecture information:
[2025-10-11 22:15:05] 2025-10-12 02:14:31,562 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:15:05] 2025-10-12 02:14:31,571 | INFO     | cat /etc/os-release:
[2025-10-11 22:15:05] NAME="CentOS Linux"
[2025-10-11 22:15:05] VERSION="7 (Core)"
[2025-10-11 22:15:05] ID="centos"
[2025-10-11 22:15:05] ID_LIKE="rhel fedora"
[2025-10-11 22:15:05] VERSION_ID="7"
[2025-10-11 22:15:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:15:05] ANSI_COLOR="0;31"
[2025-10-11 22:15:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:15:05] HOME_URL="https://www.centos.org/"
[2025-10-11 22:15:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:15:05] 
[2025-10-11 22:15:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:15:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:15:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:15:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:15:05] 
[2025-10-11 22:15:05] 2025-10-12 02:14:31,572 | INFO     | ***************************************
[2025-10-11 22:15:05] 2025-10-12 02:14:32,075 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 22:15:05] 2025-10-12 02:14:32,089 | INFO     | sufficient remaining disk space (27851227136 B)
[2025-10-11 22:15:05] 2025-10-12 02:14:32,089 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:15:05] 2025-10-12 02:14:32,089 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:15:05] 2025-10-12 02:14:32,089 | INFO     | update_server=False
[2025-10-11 22:15:05] 2025-10-12 02:14:32,089 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:15:05] 2025-10-12 02:14:32,090 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:15:05] 2025-10-12 02:14:32,090 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-11 22:15:05] 2025-10-12 02:14:32,090 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:15:05] 2025-10-12 02:14:32,090 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:15:05] 2025-10-12 02:14:32,090 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:15:05] 2025-10-12 02:14:32,092 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:15:05] 2025-10-12 02:14:32,093 | INFO     | aborting loop
[2025-10-11 22:15:05] 2025-10-12 02:14:32,308 | INFO     | all job control threads have been joined
[2025-10-11 22:15:05] 2025-10-12 02:14:32,434 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:15:05] 2025-10-12 02:14:32,596 | INFO     | all data control threads have been joined
[2025-10-11 22:15:05] 2025-10-12 02:14:32,774 | INFO     | all payload control threads have been joined
[2025-10-11 22:15:05] 2025-10-12 02:14:33,095 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:33,098 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:33,256 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:33,260 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:33,314 | INFO     | [job] control thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:33,505 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:33,602 | INFO     | [data] control thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:33,779 | INFO     | [payload] control thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:34,023 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:34,095 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:34,189 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:34,396 | INFO     | [job] validate thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:34,606 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:35,056 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:15:05] 2025-10-12 02:14:36,061 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:36,439 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:42,767 | INFO     | job.realtimelogging is not enabled
[2025-10-11 22:15:05] 2025-10-12 02:14:43,770 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:15:05] 2025-10-12 02:14:59,669 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:15:05] 2025-10-12 02:15:00,483 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140334787237696)>', '<ExcThread(monitor, started 140333744641792)>']
[2025-10-11 22:15:05] 2025-10-12 02:15:01,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:15:05] 2025-10-12 02:15:01,237 | INFO     | [monitor] control thread has ended
[2025-10-11 22:15:05] 2025-10-12 02:15:05,507 | INFO     | all workflow threads have been joined
[2025-10-11 22:15:05] 2025-10-12 02:15:05,508 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:15:05] 2025-10-12 02:15:05,508 | INFO     | traces error code: 0
[2025-10-11 22:15:05] 2025-10-12 02:15:05,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:15:05] 2025-10-12 02:15:05,617 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:15:05] 2025-10-12 02:15:05,620 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:15:05] 2025-10-12 02:15:05,622 [wrapper] pilotpid: 21755
[2025-10-11 22:15:05] 2025-10-12 02:15:05,624 [wrapper] Pilot exit status: 0
[2025-10-11 22:15:05] 2025-10-12 02:15:05,633 [wrapper] pandaids: 6838452247 6838452247
[2025-10-11 22:15:05] 2025-10-12 02:15:05,665 [wrapper] cleanup supervisor_pilot 18164 21757
[2025-10-11 22:15:05] 2025-10-12 02:15:05,667 [wrapper] Test setup, not cleaning
[2025-10-11 22:15:05] 2025-10-12 02:15:05,669 [wrapper] apfmon messages muted
[2025-10-11 22:15:05] 2025-10-12 02:15:05,672 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:15:05] 2025-10-12 02:15:05,674 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:15:05]  *** Error codes and diagnostics ***
[2025-10-11 22:15:05]     "exeErrorCode": 0,
[2025-10-11 22:15:05]     "exeErrorDiag": "",
[2025-10-11 22:15:05]     "pilotErrorCode": 0,
[2025-10-11 22:15:05]     "pilotErrorDiag": "",
[2025-10-11 22:15:05]  *** Listing of results directory ***
[2025-10-11 22:15:05] total 641140
[2025-10-11 22:15:05] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 08:51 pilot3.tar.gz
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 09:25 queuedata.json
[2025-10-11 22:15:05] -rwx------ 1 boincer umatlas     36292 Oct 11 09:26 runpilot2-wrapper.sh
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas       100 Oct 11 16:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:15:05] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 16:34 run_atlas
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas       105 Oct 11 16:34 job.xml
[2025-10-11 22:15:05] -rw-r--r-- 3 boincer umatlas 224541158 Oct 11 16:34 EVNT.46676267._002337.pool.root.1
[2025-10-11 22:15:05] -rw-r--r-- 3 boincer umatlas 224541158 Oct 11 16:34 ATLAS.root_0
[2025-10-11 22:15:05] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 16:34 start_atlas.sh
[2025-10-11 22:15:05] drwxrwx--x 2 boincer umatlas      4096 Oct 11 16:34 shared
[2025-10-11 22:15:05] -rw-r--r-- 2 boincer umatlas    569681 Oct 11 16:34 input.tar.gz
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas         0 Oct 11 16:34 boinc_lockfile
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 19:09 pandaJob.out
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas    975520 Oct 11 19:09 agis_schedconf.cvmfs.json
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas      5953 Oct 11 22:10 init_data.xml
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas        96 Oct 11 22:13 pilot_heartbeat.json
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas 199580483 Oct 11 22:13 HITS.46676269._058275.pool.root.1
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas       532 Oct 11 22:14 boinc_task_state.xml
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas      1051 Oct 11 22:14 memory_monitor_summary.json
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas   1560580 Oct 11 22:14 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas    412117 Oct 11 22:14 log.46676269._058275.job.log.tgz.1
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas      7856 Oct 11 22:14 heartbeat.json
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 22:15 boinc_mmap_file
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas        29 Oct 11 22:15 wrapper_checkpoint.txt
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas      4624 Oct 11 22:15 pilotlog.txt
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas   1562061 Oct 11 22:15 log.46676269._058275.job.log.1
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas       357 Oct 11 22:15 output.list
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas       620 Oct 11 22:15 runtime_log
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas   1996800 Oct 11 22:15 result.tar.gz
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas      8789 Oct 11 22:15 runtime_log.err
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas       787 Oct 11 22:15 3QMLDmhnoR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1VgNDmeXrnIm.diag
[2025-10-11 22:15:05] -rw-r--r-- 1 boincer umatlas     22972 Oct 11 22:15 stderr.txt
[2025-10-11 22:15:05] HITS file was successfully produced:
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas 199580483 Oct 11 22:13 shared/HITS.pool.root.1
[2025-10-11 22:15:05]  *** Contents of shared directory: ***
[2025-10-11 22:15:05] total 416720
[2025-10-11 22:15:05] -rw-r--r-- 3 boincer umatlas 224541158 Oct 11 16:34 ATLAS.root_0
[2025-10-11 22:15:05] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 16:34 start_atlas.sh
[2025-10-11 22:15:05] -rw-r--r-- 2 boincer umatlas    569681 Oct 11 16:34 input.tar.gz
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas 199580483 Oct 11 22:13 HITS.pool.root.1
[2025-10-11 22:15:05] -rw------- 1 boincer umatlas   1996800 Oct 11 22:15 result.tar.gz
22:15:07 (10686): run_atlas exited; CPU time 84995.476726
22:15:07 (10686): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN