Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:22:43 (3022847): wrapper (7.7.26015): starting
02:22:43 (3022847): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 02:22:43] Arguments: --nthreads 12
[2025-10-12 02:22:43] Threads: 12
[2025-10-12 02:22:43] Checking for CVMFS
[2025-10-12 02:22:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 02:22:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 02:22:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 02:22:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 02:22:43] 2.13.1.0 1560427 3353 97768 151601 2 56 2967262 4097025 0 130560 0 4026927 99.990 240385 8767 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-12 02:22:43] CVMFS is ok
[2025-10-12 02:22:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 02:22:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 02:22:43] Further information can be found at the LHC@home message board.
[2025-10-12 02:22:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 02:22:43] Checking for apptainer binary...
[2025-10-12 02:22:43] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-12 02:22:43] apptainer is not installed, using version from CVMFS
[2025-10-12 02:22:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 02:22:44] pckelar5.cern.ch
[2025-10-12 02:22:44] apptainer works
[2025-10-12 02:22:44] Set ATHENA_PROC_NUMBER=12
[2025-10-12 02:22:44] Set ATHENA_CORE_NUMBER=12
[2025-10-12 02:22:44] Starting ATLAS job with PandaID=6838454770
[2025-10-12 02:22:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:32:04]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:32:04]  replicas=None
[2025-10-12 03:32:04]  scope=mc23_13p6TeV
[2025-10-12 03:32:04]  status=None
[2025-10-12 03:32:04]  status_code=0
[2025-10-12 03:32:04]  storage_token=
[2025-10-12 03:32:04]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6838454770/log.46676269._059456.job.log.tgz.1
[2025-10-12 03:32:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/7d/log.46676269._059456.job.log.tgz.1
[2025-10-12 03:32:04]  workdir=None
[2025-10-12 03:32:04] ]
[2025-10-12 03:32:04] 2025-10-12 01:30:49,822 | INFO     | transferring file log.46676269._059456.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6838454770/log.46676269._059456.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 03:32:04] 2025-10-12 01:30:49,822 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6838454770/log.46676269._059456.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._059456.job
[2025-10-12 03:32:04] 2025-10-12 01:30:49,838 | INFO     | adding to output.list: log.46676269._059456.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/7d/log.46676269._059456.job.log.tg
[2025-10-12 03:32:04] 2025-10-12 01:30:49,839 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 03:32:04] 2025-10-12 01:30:49,839 | INFO     | summary of transferred files:
[2025-10-12 03:32:04] 2025-10-12 01:30:49,839 | INFO     |  -- lfn=log.46676269._059456.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 03:32:04] 2025-10-12 01:30:49,839 | INFO     | stage-out finished correctly
[2025-10-12 03:32:04] 2025-10-12 01:30:49,885 | INFO     | monitor loop #305: job 0:6838454770 is in state 'finished'
[2025-10-12 03:32:04] 2025-10-12 01:30:49,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:32:04] 2025-10-12 01:30:49,904 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 03:32:04] 2025-10-12 01:30:50,101 | INFO     | PID=3026592 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 03:32:04] 2025-10-12 01:30:51,101 | INFO     | time since job start (4080s) is within the limit (172800.0s)
[2025-10-12 03:32:04] 2025-10-12 01:30:52,178 | INFO     | job 6838454770 has state=finished
[2025-10-12 03:32:04] 2025-10-12 01:30:52,178 | INFO     | preparing for final server update for job 6838454770 in state='finished'
[2025-10-12 03:32:04] 2025-10-12 01:30:52,179 | INFO     | this job has now completed (state=finished)
[2025-10-12 03:32:04] 2025-10-12 01:30:52,179 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 03:32:04] 2025-10-12 01:30:52,179 | INFO     | log transfer has been attempted: DONE
[2025-10-12 03:32:04] 2025-10-12 01:30:52,179 | INFO     | job 6838454770 has finished - writing final server update
[2025-10-12 03:32:04] 2025-10-12 01:30:52,179 | INFO     | total number of processed events: 400 (read)
[2025-10-12 03:32:04] 2025-10-12 01:30:52,180 | INFO     | executing command: lscpu
[2025-10-12 03:32:04] 2025-10-12 01:30:52,201 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 03:32:04] 2025-10-12 01:30:52,393 | INFO     | monitor loop #306: job 0:6838454770 is in state 'finished'
[2025-10-12 03:32:04] 2025-10-12 01:30:52,393 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:32:04] 2025-10-12 01:30:53,107 | INFO     | time since job start (4082s) is within the limit (172800.0s)
[2025-10-12 03:32:04] 2025-10-12 01:30:54,896 | INFO     | monitor loop #307: job 0:6838454770 is in state 'finished'
[2025-10-12 03:32:04] 2025-10-12 01:30:54,896 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:32:04] 2025-10-12 01:30:55,112 | INFO     | time since job start (4084s) is within the limit (172800.0s)
[2025-10-12 03:32:04] 2025-10-12 01:30:56,943 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 03:32:04] 2025-10-12 01:30:56,945 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2369.041833333333
[2025-10-12 03:32:04] 2025-10-12 01:30:56,947 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838454770/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:32:04] 2025-10-12 01:30:56,947 | INFO     | extracted standard info from prmon json
[2025-10-12 03:32:04] 2025-10-12 01:30:56,947 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 03:32:04] 2025-10-12 01:30:56,948 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 03:32:04] 2025-10-12 01:30:56,948 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 03:32:04] 2025-10-12 01:30:56,948 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 03:32:04] 2025-10-12 01:30:56,949 | INFO     | fitting pss+swap vs Time
[2025-10-12 03:32:04] 2025-10-12 01:30:56,949 | INFO     | sum of square deviations: 66959395.0
[2025-10-12 03:32:04] 2025-10-12 01:30:56,950 | INFO     | sum of deviations: -7622672972.0
[2025-10-12 03:32:04] 2025-10-12 01:30:56,950 | INFO     | mean x: 1760230700.5
[2025-10-12 03:32:04] 2025-10-12 01:30:56,950 | INFO     | mean y: 3049834.2666666666
[2025-10-12 03:32:04] 2025-10-12 01:30:56,950 | INFO     | -- intersect: 200388118803.09436
[2025-10-12 03:32:04] 2025-10-12 01:30:56,950 | INFO     | intersect: 200388118803.09436
[2025-10-12 03:32:04] 2025-10-12 01:30:56,950 | INFO     | chi2: 0.10736198499299177
[2025-10-12 03:32:04] 2025-10-12 01:30:56,950 | INFO     | -- intersect: 200388118803.09436
[2025-10-12 03:32:04] 2025-10-12 01:30:56,951 | INFO     | current memory leak: -113.84 B/s (using 60 data points, chi2=0.11)
[2025-10-12 03:32:04] 2025-10-12 01:30:56,951 | INFO     | could have reported an average CPU frequency of 2523 MHz (6 samples)
[2025-10-12 03:32:04] 2025-10-12 01:30:56,951 | INFO     | ..............................
[2025-10-12 03:32:04] 2025-10-12 01:30:56,951 | INFO     | . Timing measurements:
[2025-10-12 03:32:04] 2025-10-12 01:30:56,951 | INFO     | . get job = 0 s
[2025-10-12 03:32:04] 2025-10-12 01:30:56,951 | INFO     | . initial setup = 1 s
[2025-10-12 03:32:04] 2025-10-12 01:30:56,951 | INFO     | . payload setup = 6 s
[2025-10-12 03:32:04] 2025-10-12 01:30:56,951 | INFO     | . stage-in = 0 s
[2025-10-12 03:32:04] 2025-10-12 01:30:56,951 | INFO     | . payload execution = 4053 s
[2025-10-12 03:32:04] 2025-10-12 01:30:56,952 | INFO     | . stage-out = 0 s
[2025-10-12 03:32:04] 2025-10-12 01:30:56,952 | INFO     | . log creation = 0 s
[2025-10-12 03:32:04] 2025-10-12 01:30:56,952 | INFO     | ..............................
[2025-10-12 03:32:04] 2025-10-12 01:30:57,020 | INFO     | 
[2025-10-12 03:32:04] 2025-10-12 01:30:57,021 | INFO     | job summary report
[2025-10-12 03:32:04] 2025-10-12 01:30:57,021 | INFO     | --------------------------------------------------
[2025-10-12 03:32:04] 2025-10-12 01:30:57,021 | INFO     | PanDA job id: 6838454770
[2025-10-12 03:32:04] 2025-10-12 01:30:57,021 | INFO     | task id: 46676269
[2025-10-12 03:32:04] 2025-10-12 01:30:57,021 | INFO     | errors: (none)
[2025-10-12 03:32:04] 2025-10-12 01:30:57,021 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 03:32:04] 2025-10-12 01:30:57,021 | INFO     | pilot state: finished 
[2025-10-12 03:32:04] 2025-10-12 01:30:57,021 | INFO     | transexitcode: 0
[2025-10-12 03:32:04] 2025-10-12 01:30:57,021 | INFO     | exeerrorcode: 0
[2025-10-12 03:32:04] 2025-10-12 01:30:57,021 | INFO     | exeerrordiag: 
[2025-10-12 03:32:04] 2025-10-12 01:30:57,021 | INFO     | exitcode: 0
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | exitmsg: OK
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | cpuconsumptiontime: 43682 s
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | nevents: 400
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | neventsw: 0
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | pid: 3033914
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | pgrp: 3033914
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | corecount: 12
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | event service: False
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | sizes: {0: 2348029, 1: 2348885, 4: 2349147, 12: 2349175, 4063: 2375150, 4064: 2384332, 4071: 2384470}
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | --------------------------------------------------
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | 
[2025-10-12 03:32:04] 2025-10-12 01:30:57,022 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-12 03:32:04] 2025-10-12 01:30:57,044 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,044 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,044 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,044 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,044 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,044 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,044 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,044 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,045 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,045 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,045 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,045 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,045 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,045 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,045 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,045 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,045 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,045 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 03:32:04] 2025-10-12 01:30:57,045 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,046 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 03:32:04] 2025-10-12 01:30:57,046 | INFO     | job 6838454770 has completed (purged errors)
[2025-10-12 03:32:04] 2025-10-12 01:30:57,046 | INFO     | overall cleanup function is called
[2025-10-12 03:32:04] 2025-10-12 01:30:58,052 | INFO     | --- collectZombieJob: --- 10, [3033914]
[2025-10-12 03:32:04] 2025-10-12 01:30:58,053 | INFO     | zombie collector waiting for pid 3033914
[2025-10-12 03:32:04] 2025-10-12 01:30:58,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 03:32:04] 2025-10-12 01:30:58,053 | INFO     | collected zombie processes
[2025-10-12 03:32:04] 2025-10-12 01:30:58,053 | INFO     | will attempt to kill all subprocesses of pid=3033914
[2025-10-12 03:32:04] 2025-10-12 01:30:58,133 | INFO     | process IDs to be killed: [3033914] (in reverse order)
[2025-10-12 03:32:04] 2025-10-12 01:30:58,169 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:32:04] 2025-10-12 01:30:58,169 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:32:04] 2025-10-12 01:30:58,171 | INFO     | did not find any defunct processes belonging to 3033914
[2025-10-12 03:32:04] 2025-10-12 01:30:58,173 | INFO     | did not find any defunct processes belonging to 3033914
[2025-10-12 03:32:04] 2025-10-12 01:30:58,173 | INFO     | ready for new job
[2025-10-12 03:32:04] 2025-10-12 01:30:58,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:32:04] 2025-10-12 01:30:58,174 | INFO     | ***************************************
[2025-10-12 03:32:04] 2025-10-12 01:30:58,175 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 03:32:04] 2025-10-12 01:30:58,175 | INFO     | ***************************************
[2025-10-12 03:32:04] 2025-10-12 01:30:58,175 | INFO     | 
[2025-10-12 03:32:04] 2025-10-12 01:30:58,175 | INFO     | architecture information:
[2025-10-12 03:32:04] 2025-10-12 01:30:58,175 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:32:04] 2025-10-12 01:30:58,184 | INFO     | cat /etc/os-release:
[2025-10-12 03:32:04] NAME="CentOS Linux"
[2025-10-12 03:32:04] VERSION="7 (Core)"
[2025-10-12 03:32:04] ID="centos"
[2025-10-12 03:32:04] ID_LIKE="rhel fedora"
[2025-10-12 03:32:04] VERSION_ID="7"
[2025-10-12 03:32:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:32:04] ANSI_COLOR="0;31"
[2025-10-12 03:32:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:32:04] HOME_URL="https://www.centos.org/"
[2025-10-12 03:32:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:32:04] 
[2025-10-12 03:32:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:32:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:32:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:32:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:32:04] 
[2025-10-12 03:32:04] 2025-10-12 01:30:58,185 | INFO     | ***************************************
[2025-10-12 03:32:04] 2025-10-12 01:30:58,687 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 03:32:04] 2025-10-12 01:30:58,701 | INFO     | sufficient remaining disk space (1817345785856 B)
[2025-10-12 03:32:04] 2025-10-12 01:30:58,701 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:32:04] 2025-10-12 01:30:58,701 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:32:04] 2025-10-12 01:30:58,701 | INFO     | update_server=False
[2025-10-12 03:32:04] 2025-10-12 01:30:58,701 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:32:04] 2025-10-12 01:30:58,701 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:32:04] 2025-10-12 01:30:58,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:32:04] 2025-10-12 01:30:58,702 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:32:04] 2025-10-12 01:30:58,702 | INFO     | aborting loop
[2025-10-12 03:32:04] 2025-10-12 01:30:58,785 | INFO     | all data control threads have been joined
[2025-10-12 03:32:04] 2025-10-12 01:30:59,707 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:30:59,707 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:30:59,708 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:30:59,787 | INFO     | [data] control thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:00,066 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:00,200 | INFO     | all payload control threads have been joined
[2025-10-12 03:32:04] 2025-10-12 01:31:00,390 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:00,401 | INFO     | all job control threads have been joined
[2025-10-12 03:32:04] 2025-10-12 01:31:00,404 | INFO     | [job] validate thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:00,482 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:32:04] 2025-10-12 01:31:00,647 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:00,707 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:00,722 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:01,174 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:01,179 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:01,205 | INFO     | [payload] control thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:01,406 | INFO     | [job] control thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:04,488 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:09,501 | INFO     | job.realtimelogging is not enabled
[2025-10-12 03:32:04] 2025-10-12 01:31:10,506 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:32:04] 2025-10-12 01:31:28,298 | INFO     | PID=3026592 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 03:32:04] 2025-10-12 01:31:28,298 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:32:04] 2025-10-12 01:31:28,299 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:32:04] 2025-10-12 01:31:28,299 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:32:04] 2025-10-12 01:31:57,896 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:32:04] 2025-10-12 01:31:59,391 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139797059815232)>', '<ExcThread(monitor, started 139796001314560)>']
[2025-10-12 03:32:04] 2025-10-12 01:31:59,453 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:32:04] 2025-10-12 01:31:59,453 | INFO     | [monitor] control thread has ended
[2025-10-12 03:32:04] 2025-10-12 01:32:04,398 | INFO     | all workflow threads have been joined
[2025-10-12 03:32:04] 2025-10-12 01:32:04,398 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:32:04] 2025-10-12 01:32:04,398 | INFO     | traces error code: 0
[2025-10-12 03:32:04] 2025-10-12 01:32:04,398 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:32:04] 2025-10-12 01:32:04,473 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:32:04] 2025-10-12 01:32:04,476 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:32:04] 2025-10-12 01:32:04,478 [wrapper] pilotpid: 3026592
[2025-10-12 03:32:04] 2025-10-12 01:32:04,481 [wrapper] Pilot exit status: 0
[2025-10-12 03:32:04] 2025-10-12 01:32:04,489 [wrapper] pandaids: 6838454770
[2025-10-12 03:32:04] 2025-10-12 01:32:04,513 [wrapper] cleanup supervisor_pilot 3047231 3026593
[2025-10-12 03:32:04] 2025-10-12 01:32:04,515 [wrapper] Test setup, not cleaning
[2025-10-12 03:32:04] 2025-10-12 01:32:04,517 [wrapper] apfmon messages muted
[2025-10-12 03:32:04] 2025-10-12 01:32:04,519 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:32:04] 2025-10-12 01:32:04,521 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:32:04]  *** Error codes and diagnostics ***
[2025-10-12 03:32:04]     "exeErrorCode": 0,
[2025-10-12 03:32:04]     "exeErrorDiag": "",
[2025-10-12 03:32:04]     "pilotErrorCode": 0,
[2025-10-12 03:32:04]     "pilotErrorDiag": "",
[2025-10-12 03:32:04]  *** Listing of results directory ***
[2025-10-12 03:32:04] total 410256
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc    557409 Oct 11 16:01 pilot3.tar.gz
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc      5112 Oct 11 16:50 queuedata.json
[2025-10-12 03:32:04] -rwx------ 1 boinc boinc     36292 Oct 11 16:50 runpilot2-wrapper.sh
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc       100 Oct 12 02:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:32:04] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 02:22 run_atlas
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc       105 Oct 12 02:22 job.xml
[2025-10-12 03:32:04] -rw-r--r-- 2 boinc boinc 220852016 Oct 12 02:22 EVNT.46676267._002399.pool.root.1
[2025-10-12 03:32:04] -rw-r--r-- 2 boinc boinc     15120 Oct 12 02:22 start_atlas.sh
[2025-10-12 03:32:04] drwxrwx--x 2 boinc boinc        68 Oct 12 02:22 shared
[2025-10-12 03:32:04] -rw-r--r-- 2 boinc boinc    569678 Oct 12 02:22 input.tar.gz
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc      6294 Oct 12 02:22 init_data.xml
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc         0 Oct 12 02:22 boinc_lockfile
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc      2550 Oct 12 02:22 pandaJob.out
[2025-10-12 03:32:04] -rw------- 1 boinc boinc    975496 Oct 12 02:22 agis_schedconf.cvmfs.json
[2025-10-12 03:32:04] -rw------- 1 boinc boinc   1560580 Oct 12 02:22 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:32:04] drwx------ 5 boinc boinc      4096 Oct 12 02:22 pilot3
[2025-10-12 03:32:04] -rw------- 1 boinc boinc 193413973 Oct 12 03:30 HITS.46676269._059456.pool.root.1
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc       529 Oct 12 03:30 boinc_task_state.xml
[2025-10-12 03:32:04] -rw------- 1 boinc boinc        95 Oct 12 03:30 pilot_heartbeat.json
[2025-10-12 03:32:04] -rw------- 1 boinc boinc      1020 Oct 12 03:30 memory_monitor_summary.json
[2025-10-12 03:32:04] -rw------- 1 boinc boinc    371508 Oct 12 03:30 log.46676269._059456.job.log.tgz.1
[2025-10-12 03:32:04] -rw------- 1 boinc boinc      7788 Oct 12 03:30 heartbeat.json
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc        27 Oct 12 03:31 wrapper_checkpoint.txt
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc      8192 Oct 12 03:31 boinc_mmap_file
[2025-10-12 03:32:04] -rw------- 1 boinc boinc      4822 Oct 12 03:32 pilotlog.txt
[2025-10-12 03:32:04] -rw------- 1 boinc boinc    599479 Oct 12 03:32 log.46676269._059456.job.log.1
[2025-10-12 03:32:04] -rw------- 1 boinc boinc       357 Oct 12 03:32 output.list
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc       620 Oct 12 03:32 runtime_log
[2025-10-12 03:32:04] -rw------- 1 boinc boinc    993280 Oct 12 03:32 result.tar.gz
[2025-10-12 03:32:04] -rw------- 1 boinc boinc       655 Oct 12 03:32 YsmLDmw6pR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmX4RMDmn1G46n.diag
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc      8727 Oct 12 03:32 runtime_log.err
[2025-10-12 03:32:04] -rw-r--r-- 1 boinc boinc     22040 Oct 12 03:32 stderr.txt
[2025-10-12 03:32:04] HITS file was successfully produced:
[2025-10-12 03:32:04] -rw------- 1 boinc boinc 193413973 Oct 12 03:30 shared/HITS.pool.root.1
[2025-10-12 03:32:04]  *** Contents of shared directory: ***
[2025-10-12 03:32:04] total 406108
[2025-10-12 03:32:04] -rw-r--r-- 2 boinc boinc 220852016 Oct 12 02:22 ATLAS.root_0
[2025-10-12 03:32:04] -rw-r--r-- 2 boinc boinc     15120 Oct 12 02:22 start_atlas.sh
[2025-10-12 03:32:04] -rw-r--r-- 2 boinc boinc    569678 Oct 12 02:22 input.tar.gz
[2025-10-12 03:32:04] -rw------- 1 boinc boinc 193413973 Oct 12 03:30 HITS.pool.root.1
[2025-10-12 03:32:04] -rw------- 1 boinc boinc    993280 Oct 12 03:32 result.tar.gz
03:32:05 (3022847): run_atlas exited; CPU time 43696.321566
03:32:05 (3022847): called boinc_finish(0)

</stderr_txt>
]]>

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