Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:35:17 (3474720): wrapper (7.7.26015): starting
16:35:17 (3474720): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 16:35:17] Arguments: --nthreads 12
[2025-10-11 16:35:17] Threads: 12
[2025-10-11 16:35:17] Checking for CVMFS
[2025-10-11 16:35:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 16:35:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 16:35:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 16:35:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 16:35:17] 2.13.2.0 135553 3240 108960 151595 1 196 31855696 32503809 8228 16776704 0 53149631 99.973 3204242 51501 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 16:35:17] CVMFS is ok
[2025-10-11 16:35:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:35:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 16:35:17] Further information can be found at the LHC@home message board.
[2025-10-11 16:35:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:35:17] Checking for apptainer binary...
[2025-10-11 16:35:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 16:35:17] Running /usr/bin/apptainer --version
[2025-10-11 16:35:17] apptainer version 1.4.3-1.el9
[2025-10-11 16:35:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:35:17] c8-7-2.aglt2.org
[2025-10-11 16:35:17] apptainer works
[2025-10-11 16:35:17] Set ATHENA_PROC_NUMBER=12
[2025-10-11 16:35:17] Set ATHENA_CORE_NUMBER=12
[2025-10-11 16:35:17] Starting ATLAS job with PandaID=6838450965
[2025-10-11 16:35:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 17:03:34]  *** The last 200 lines of the pilot log: ***
[2025-10-11 17:03:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/64/log.46676269._057912.job.log.tgz.1
[2025-10-11 17:03:34]  workdir=None
[2025-10-11 17:03:34] ]
[2025-10-11 17:03:34] 2025-10-11 21:02:42,117 | INFO     | transferring file log.46676269._057912.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6838450965/log.46676269._057912.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 17:03:34] 2025-10-11 21:02:42,117 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6838450965/log.46676269._057912.job.log.tgz.1 /tmp/boinchome/slots/4/log.46676269._057912.job
[2025-10-11 17:03:34] 2025-10-11 21:02:42,132 | INFO     | adding to output.list: log.46676269._057912.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/64/log.46676269._057912.job.log.tg
[2025-10-11 17:03:34] 2025-10-11 21:02:42,132 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 17:03:34] 2025-10-11 21:02:42,132 | INFO     | summary of transferred files:
[2025-10-11 17:03:34] 2025-10-11 21:02:42,132 | INFO     |  -- lfn=log.46676269._057912.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 17:03:34] 2025-10-11 21:02:42,132 | INFO     | stage-out finished correctly
[2025-10-11 17:03:34] 2025-10-11 21:02:42,867 | INFO     | time since job start (1636s) is within the limit (172800.0s)
[2025-10-11 17:03:34] 2025-10-11 21:02:42,985 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 17:03:34] 2025-10-11 21:02:43,037 | INFO     | job 6838450965 has state=finished
[2025-10-11 17:03:34] 2025-10-11 21:02:43,037 | INFO     | preparing for final server update for job 6838450965 in state='finished'
[2025-10-11 17:03:34] 2025-10-11 21:02:43,037 | INFO     | this job has now completed (state=finished)
[2025-10-11 17:03:34] 2025-10-11 21:02:43,037 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 17:03:34] 2025-10-11 21:02:43,037 | INFO     | log transfer has been attempted: DONE
[2025-10-11 17:03:34] 2025-10-11 21:02:43,037 | INFO     | job 6838450965 has finished - writing final server update
[2025-10-11 17:03:34] 2025-10-11 21:02:43,038 | INFO     | total number of processed events: 400 (read)
[2025-10-11 17:03:34] 2025-10-11 21:02:43,038 | INFO     | executing command: lscpu
[2025-10-11 17:03:34] 2025-10-11 21:02:43,102 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 17:03:34] 2025-10-11 21:02:44,873 | INFO     | time since job start (1638s) is within the limit (172800.0s)
[2025-10-11 17:03:34] 2025-10-11 21:02:46,663 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 17:03:34] 2025-10-11 21:02:46,680 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3632.5569062499967
[2025-10-11 17:03:34] 2025-10-11 21:02:46,694 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6838450965/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 17:03:34] 2025-10-11 21:02:46,695 | INFO     | extracted standard info from prmon json
[2025-10-11 17:03:34] 2025-10-11 21:02:46,695 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 17:03:34] 2025-10-11 21:02:46,695 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 17:03:34] 2025-10-11 21:02:46,695 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 17:03:34] 2025-10-11 21:02:46,695 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 17:03:34] 2025-10-11 21:02:46,696 | INFO     | fitting pss+swap vs Time
[2025-10-11 17:03:34] 2025-10-11 21:02:46,696 | INFO     | sum of square deviations: 2474465.0
[2025-10-11 17:03:34] 2025-10-11 21:02:46,696 | INFO     | sum of deviations: 171880157.5
[2025-10-11 17:03:34] 2025-10-11 21:02:46,696 | INFO     | mean x: 1760215834.5
[2025-10-11 17:03:34] 2025-10-11 21:02:46,696 | INFO     | mean y: 2412279.45
[2025-10-11 17:03:34] 2025-10-11 21:02:46,697 | INFO     | -- intersect: -122264895953.9879
[2025-10-11 17:03:34] 2025-10-11 21:02:46,697 | INFO     | intersect: -122264895953.9879
[2025-10-11 17:03:34] 2025-10-11 21:02:46,697 | INFO     | chi2: 0.0007129695625451825
[2025-10-11 17:03:34] 2025-10-11 21:02:46,697 | INFO     | -- intersect: -122264895953.9879
[2025-10-11 17:03:34] 2025-10-11 21:02:46,697 | INFO     | current memory leak: 69.46 B/s (using 20 data points, chi2=0.00)
[2025-10-11 17:03:34] 2025-10-11 21:02:46,697 | INFO     | could have reported an average CPU frequency of 3625 MHz (4 samples)
[2025-10-11 17:03:34] 2025-10-11 21:02:46,697 | INFO     | ..............................
[2025-10-11 17:03:34] 2025-10-11 21:02:46,697 | INFO     | . Timing measurements:
[2025-10-11 17:03:34] 2025-10-11 21:02:46,697 | INFO     | . get job = 0 s
[2025-10-11 17:03:34] 2025-10-11 21:02:46,697 | INFO     | . initial setup = 2 s
[2025-10-11 17:03:34] 2025-10-11 21:02:46,697 | INFO     | . payload setup = 4 s
[2025-10-11 17:03:34] 2025-10-11 21:02:46,698 | INFO     | . stage-in = 0 s
[2025-10-11 17:03:34] 2025-10-11 21:02:46,698 | INFO     | . payload execution = 1612 s
[2025-10-11 17:03:34] 2025-10-11 21:02:46,698 | INFO     | . stage-out = 0 s
[2025-10-11 17:03:34] 2025-10-11 21:02:46,698 | INFO     | . log creation = 0 s
[2025-10-11 17:03:34] 2025-10-11 21:02:46,698 | INFO     | ..............................
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | 
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | job summary report
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | --------------------------------------------------
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | PanDA job id: 6838450965
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | task id: 46676269
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | errors: (none)
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | pilot state: finished 
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | transexitcode: 0
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | exeerrorcode: 0
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | exeerrordiag: 
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | exitcode: 0
[2025-10-11 17:03:34] 2025-10-11 21:02:46,753 | INFO     | exitmsg: OK
[2025-10-11 17:03:34] 2025-10-11 21:02:46,754 | INFO     | cpuconsumptiontime: 17196 s
[2025-10-11 17:03:34] 2025-10-11 21:02:46,754 | INFO     | nevents: 400
[2025-10-11 17:03:34] 2025-10-11 21:02:46,754 | INFO     | neventsw: 0
[2025-10-11 17:03:34] 2025-10-11 21:02:46,754 | INFO     | pid: 3485401
[2025-10-11 17:03:34] 2025-10-11 21:02:46,754 | INFO     | pgrp: 3485401
[2025-10-11 17:03:34] 2025-10-11 21:02:46,754 | INFO     | corecount: 12
[2025-10-11 17:03:34] 2025-10-11 21:02:46,754 | INFO     | event service: False
[2025-10-11 17:03:34] 2025-10-11 21:02:46,754 | INFO     | sizes: {0: 2348856, 3: 2349118, 11: 2349146, 1620: 2373987, 1621: 2383040, 1622: 2383040, 1626: 2383362}
[2025-10-11 17:03:34] 2025-10-11 21:02:46,754 | INFO     | --------------------------------------------------
[2025-10-11 17:03:34] 2025-10-11 21:02:46,754 | INFO     | 
[2025-10-11 17:03:34] 2025-10-11 21:02:46,754 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,773 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,774 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,774 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,774 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 17:03:34] 2025-10-11 21:02:46,774 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,774 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 17:03:34] 2025-10-11 21:02:46,774 | INFO     | job 6838450965 has completed (purged errors)
[2025-10-11 17:03:34] 2025-10-11 21:02:46,774 | INFO     | overall cleanup function is called
[2025-10-11 17:03:34] 2025-10-11 21:02:47,782 | INFO     | --- collectZombieJob: --- 10, [3485401]
[2025-10-11 17:03:34] 2025-10-11 21:02:47,782 | INFO     | zombie collector waiting for pid 3485401
[2025-10-11 17:03:34] 2025-10-11 21:02:47,782 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 17:03:34] 2025-10-11 21:02:47,782 | INFO     | collected zombie processes
[2025-10-11 17:03:34] 2025-10-11 21:02:47,783 | INFO     | will attempt to kill all subprocesses of pid=3485401
[2025-10-11 17:03:34] 2025-10-11 21:02:48,410 | WARNING  | process 3485401 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 17:03:34] 2025-10-11 21:02:48,983 | INFO     | process IDs to be killed: [3485401] (in reverse order)
[2025-10-11 17:03:34] 2025-10-11 21:02:49,117 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 17:03:34] 2025-10-11 21:02:49,117 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 17:03:34] 2025-10-11 21:02:49,181 | INFO     | using path: /tmp/boinchome/slots/4/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 17:03:34] 2025-10-11 21:02:49,182 | INFO     | using path: /tmp/boinchome/slots/4/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 17:03:34] 2025-10-11 21:02:49,183 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-11 17:03:34] 2025-10-11 21:02:49,183 | WARNING  | maxPSS not found in memory monitor output
[2025-10-11 17:03:34] 2025-10-11 21:02:49,183 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/4/PanDA_Pilot-6838450965/payload.stdout) since it has not been created yet
[2025-10-11 17:03:34] 2025-10-11 21:02:49,183 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-11 17:03:34] 2025-10-11 21:02:49,187 | INFO     | did not find any defunct processes belonging to 3485401
[2025-10-11 17:03:34] 2025-10-11 21:02:49,198 | INFO     | sufficient remaining disk space (91194654720 B)
[2025-10-11 17:03:34] 2025-10-11 21:02:49,199 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-11 17:03:34] 2025-10-11 21:02:49,199 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/4/PanDA_Pilot-6838450965/HITS.46676269._057912.pool.root.1 since it does not exist
[2025-10-11 17:03:34] 2025-10-11 21:02:49,218 | INFO     | did not find any defunct processes belonging to 3485401
[2025-10-11 17:03:34] 2025-10-11 21:02:49,219 | INFO     | ready for new job
[2025-10-11 17:03:34] 2025-10-11 21:02:49,219 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 17:03:34] 2025-10-11 21:02:49,221 | INFO     | ***************************************
[2025-10-11 17:03:34] 2025-10-11 21:02:49,221 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 17:03:34] 2025-10-11 21:02:49,221 | INFO     | ***************************************
[2025-10-11 17:03:34] 2025-10-11 21:02:49,221 | INFO     | 
[2025-10-11 17:03:34] 2025-10-11 21:02:49,241 | INFO     | architecture information:
[2025-10-11 17:03:34] 2025-10-11 21:02:49,241 | INFO     | executing command: cat /etc/os-release
[2025-10-11 17:03:34] 2025-10-11 21:02:49,256 | INFO     | cat /etc/os-release:
[2025-10-11 17:03:34] NAME="CentOS Linux"
[2025-10-11 17:03:34] VERSION="7 (Core)"
[2025-10-11 17:03:34] ID="centos"
[2025-10-11 17:03:34] ID_LIKE="rhel fedora"
[2025-10-11 17:03:34] VERSION_ID="7"
[2025-10-11 17:03:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 17:03:34] ANSI_COLOR="0;31"
[2025-10-11 17:03:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 17:03:34] HOME_URL="https://www.centos.org/"
[2025-10-11 17:03:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 17:03:34] 
[2025-10-11 17:03:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 17:03:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 17:03:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 17:03:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 17:03:34] 
[2025-10-11 17:03:34] 2025-10-11 21:02:49,257 | INFO     | ***************************************
[2025-10-11 17:03:34] 2025-10-11 21:02:49,603 | INFO     | number of running child processes to parent process 3485401: 1
[2025-10-11 17:03:34] 2025-10-11 21:02:49,603 | INFO     | maximum number of monitored processes: 6
[2025-10-11 17:03:34] 2025-10-11 21:02:49,603 | INFO     | aborting job monitoring since job object (job id=6838450965) has expired
[2025-10-11 17:03:34] 2025-10-11 21:02:49,760 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-11 17:03:34] 2025-10-11 21:02:49,776 | INFO     | sufficient remaining disk space (91194654720 B)
[2025-10-11 17:03:34] 2025-10-11 21:02:49,776 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 17:03:34] 2025-10-11 21:02:49,777 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 17:03:34] 2025-10-11 21:02:49,777 | INFO     | update_server=False
[2025-10-11 17:03:34] 2025-10-11 21:02:49,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 17:03:34] 2025-10-11 21:02:49,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 17:03:34] 2025-10-11 21:02:49,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 17:03:34] 2025-10-11 21:02:49,777 | INFO     | will abort loop
[2025-10-11 17:03:34] 2025-10-11 21:02:50,062 | INFO     | all payload control threads have been joined
[2025-10-11 17:03:34] 2025-10-11 21:02:50,196 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 17:03:34] 2025-10-11 21:02:50,267 | INFO     | all data control threads have been joined
[2025-10-11 17:03:34] 2025-10-11 21:02:50,782 | INFO     | [job] retrieve thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:50,783 | INFO     | [job] job monitor thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:50,815 | INFO     | [data] copytool_in thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:51,066 | INFO     | [payload] control thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:51,252 | INFO     | all job control threads have been joined
[2025-10-11 17:03:34] 2025-10-11 21:02:51,272 | INFO     | [data] control thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:51,364 | INFO     | [job] validate thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:51,386 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:51,555 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:51,635 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:51,660 | INFO     | [payload] failed_post thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:51,761 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 17:03:34] 2025-10-11 21:02:52,202 | INFO     | [data] copytool_out thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:52,226 | INFO     | [payload] validate_post thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:52,258 | INFO     | [job] control thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:52,761 | INFO     | [job] queue monitor thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:02:53,783 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:03:00,534 | INFO     | job.realtimelogging is not enabled
[2025-10-11 17:03:34] 2025-10-11 21:03:01,540 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 17:03:34] 2025-10-11 21:03:18,433 | INFO     | PID=3478966 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 17:03:34] 2025-10-11 21:03:18,434 | INFO     | .. there are 11 such processes running
[2025-10-11 17:03:34] 2025-10-11 21:03:18,435 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 17:03:34] 2025-10-11 21:03:18,435 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 17:03:34] 2025-10-11 21:03:18,435 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 17:03:34] 2025-10-11 21:03:28,493 | INFO     | [monitor] cgroup control has ended
[2025-10-11 17:03:34] 2025-10-11 21:03:29,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956405937984)>', '<ExcThread(monitor, started 139955913344768)>']
[2025-10-11 17:03:34] 2025-10-11 21:03:29,491 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 17:03:34] 2025-10-11 21:03:29,492 | INFO     | [monitor] control thread has ended
[2025-10-11 17:03:34] 2025-10-11 21:03:34,039 | INFO     | all workflow threads have been joined
[2025-10-11 17:03:34] 2025-10-11 21:03:34,040 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 17:03:34] 2025-10-11 21:03:34,041 | INFO     | traces error code: 0
[2025-10-11 17:03:34] 2025-10-11 21:03:34,041 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 17:03:34] 2025-10-11 21:03:34,122 [wrapper] ==== pilot stdout END ====
[2025-10-11 17:03:34] 2025-10-11 21:03:34,124 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 17:03:34] 2025-10-11 21:03:34,127 [wrapper] pilotpid: 3478966
[2025-10-11 17:03:34] 2025-10-11 21:03:34,130 [wrapper] Pilot exit status: 0
[2025-10-11 17:03:34] 2025-10-11 21:03:34,139 [wrapper] pandaids: 6838450965
[2025-10-11 17:03:34] 2025-10-11 21:03:34,235 [wrapper] cleanup supervisor_pilot 3571295 3478967
[2025-10-11 17:03:34] 2025-10-11 21:03:34,238 [wrapper] Test setup, not cleaning
[2025-10-11 17:03:34] 2025-10-11 21:03:34,240 [wrapper] apfmon messages muted
[2025-10-11 17:03:34] 2025-10-11 21:03:34,242 [wrapper] ==== wrapper stdout END ====
[2025-10-11 17:03:34] 2025-10-11 21:03:34,244 [wrapper] ==== wrapper stderr END ====
[2025-10-11 17:03:34]  *** Error codes and diagnostics ***
[2025-10-11 17:03:34]     "exeErrorCode": 0,
[2025-10-11 17:03:34]     "exeErrorDiag": "",
[2025-10-11 17:03:34]     "pilotErrorCode": 0,
[2025-10-11 17:03:34]     "pilotErrorDiag": "",
[2025-10-11 17:03:34]  *** Listing of results directory ***
[2025-10-11 17:03:34] total 409592
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 08:28 pilot3.tar.gz
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 08:43 queuedata.json
[2025-10-11 17:03:34] -rwx------. 1 boincer umatlas     36292 Oct 11 08:45 runpilot2-wrapper.sh
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas       100 Oct 11 16:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 17:03:34] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 16:35 run_atlas
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas       105 Oct 11 16:35 job.xml
[2025-10-11 17:03:34] -rw-r--r--. 2 boincer umatlas 221226579 Oct 11 16:35 EVNT.46676267._002322.pool.root.1
[2025-10-11 17:03:34] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 16:35 start_atlas.sh
[2025-10-11 17:03:34] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 16:35 shared
[2025-10-11 17:03:34] -rw-r--r--. 2 boincer umatlas    569684 Oct 11 16:35 input.tar.gz
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas         0 Oct 11 16:35 boinc_lockfile
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas      2549 Oct 11 16:35 pandaJob.out
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas    975528 Oct 11 16:35 agis_schedconf.cvmfs.json
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas   1560580 Oct 11 16:35 agis_ddmendpoints.agis.ALL.json
[2025-10-11 17:03:34] drwx------. 5 boincer umatlas      4096 Oct 11 16:35 pilot3
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas      7161 Oct 11 17:02 init_data.xml
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas 193043632 Oct 11 17:02 HITS.46676269._057912.pool.root.1
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas       529 Oct 11 17:02 boinc_task_state.xml
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas      1031 Oct 11 17:02 memory_monitor_summary.json
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas    351284 Oct 11 17:02 log.46676269._057912.job.log.tgz.1
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas      7772 Oct 11 17:02 heartbeat.json
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas        95 Oct 11 17:03 pilot_heartbeat.json
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 17:03 boinc_mmap_file
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas        27 Oct 11 17:03 wrapper_checkpoint.txt
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas      5186 Oct 11 17:03 pilotlog.txt
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas    274011 Oct 11 17:03 log.46676269._057912.job.log.1
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas       357 Oct 11 17:03 output.list
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas       620 Oct 11 17:03 runtime_log
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas    645120 Oct 11 17:03 result.tar.gz
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas      8695 Oct 11 17:03 runtime_log.err
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas       646 Oct 11 17:03 1cGLDmG9nR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmITgNDm1Txzlm.diag
[2025-10-11 17:03:34] -rw-r--r--. 1 boincer umatlas     22399 Oct 11 17:03 stderr.txt
[2025-10-11 17:03:34] HITS file was successfully produced:
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas 193043632 Oct 11 17:02 shared/HITS.pool.root.1
[2025-10-11 17:03:34]  *** Contents of shared directory: ***
[2025-10-11 17:03:34] total 405776
[2025-10-11 17:03:34] -rw-r--r--. 2 boincer umatlas 221226579 Oct 11 16:35 ATLAS.root_0
[2025-10-11 17:03:34] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 16:35 start_atlas.sh
[2025-10-11 17:03:34] -rw-r--r--. 2 boincer umatlas    569684 Oct 11 16:35 input.tar.gz
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas 193043632 Oct 11 17:02 HITS.pool.root.1
[2025-10-11 17:03:34] -rw-------. 1 boincer umatlas    645120 Oct 11 17:03 result.tar.gz
17:03:35 (3474720): run_atlas exited; CPU time 17231.920581
17:03:35 (3474720): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN