Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:56:09 (1697116): wrapper (7.7.26015): starting
07:56:09 (1697116): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 07:56:09] Arguments: --nthreads 2
[2025-10-12 07:56:09] Threads: 2
[2025-10-12 07:56:09] Checking for CVMFS
[2025-10-12 07:56:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:56:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:56:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:56:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:56:09] 2.9.2.0 779100 3988 58336 151609 1 57 19454389 36864001 0 130560 0 2422702 99.989 132998 880 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 07:56:09] CVMFS is ok
[2025-10-12 07:56:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:56:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:56:09] Further information can be found at the LHC@home message board.
[2025-10-12 07:56:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:56:09] Checking for apptainer binary...
[2025-10-12 07:56:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:56:09] Running /usr/bin/apptainer --version
[2025-10-12 07:56:09] apptainer version 1.4.1-1.1
[2025-10-12 07:56:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:56:09] atlasA229
[2025-10-12 07:56:09] apptainer works
[2025-10-12 07:56:09] Set ATHENA_PROC_NUMBER=2
[2025-10-12 07:56:09] Set ATHENA_CORE_NUMBER=2
[2025-10-12 07:56:09] Starting ATLAS job with PandaID=6838603293
[2025-10-12 07:56:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:03:41]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:03:41] 2025-10-12 08:03:10,236 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:03:41] 2025-10-12 08:03:10,236 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:03:41] 2025-10-12 08:03:10,236 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:03:41] 2025-10-12 08:03:10,236 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:03:41] 2025-10-12 08:03:10,236 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:03:41] 2025-10-12 08:03:10,236 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:03:41] 2025-10-12 08:03:10,236 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:03:41] 2025-10-12 08:03:10,236 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:03:41] 2025-10-12 08:03:10,236 | INFO     | job 6838603293 has completed (purged errors)
[2025-10-12 10:03:41] 2025-10-12 08:03:10,236 | INFO     | overall cleanup function is called
[2025-10-12 10:03:41] 2025-10-12 08:03:11,243 | INFO     | --- collectZombieJob: --- 10, [1707225]
[2025-10-12 10:03:41] 2025-10-12 08:03:11,243 | INFO     | zombie collector waiting for pid 1707225
[2025-10-12 10:03:41] 2025-10-12 08:03:11,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:03:41] 2025-10-12 08:03:11,243 | INFO     | collected zombie processes
[2025-10-12 10:03:41] 2025-10-12 08:03:11,244 | INFO     | will attempt to kill all subprocesses of pid=1707225
[2025-10-12 10:03:41] 2025-10-12 08:03:11,276 | INFO     | process IDs to be killed: [1707225] (in reverse order)
[2025-10-12 10:03:41] 2025-10-12 08:03:11,298 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:03:41] 2025-10-12 08:03:11,298 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:03:41] 2025-10-12 08:03:11,299 | INFO     | did not find any defunct processes belonging to 1707225
[2025-10-12 10:03:41] 2025-10-12 08:03:11,299 | INFO     | did not find any defunct processes belonging to 1707225
[2025-10-12 10:03:41] 2025-10-12 08:03:11,299 | INFO     | ready for new job
[2025-10-12 10:03:41] 2025-10-12 08:03:11,299 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:03:41] 2025-10-12 08:03:11,300 | INFO     | ***************************************
[2025-10-12 10:03:41] 2025-10-12 08:03:11,300 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:03:41] 2025-10-12 08:03:11,300 | INFO     | ***************************************
[2025-10-12 10:03:41] 2025-10-12 08:03:11,300 | INFO     | 
[2025-10-12 10:03:41] 2025-10-12 08:03:11,300 | INFO     | architecture information:
[2025-10-12 10:03:41] 2025-10-12 08:03:11,300 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:03:41] 2025-10-12 08:03:11,309 | INFO     | cat /etc/os-release:
[2025-10-12 10:03:41] NAME="CentOS Linux"
[2025-10-12 10:03:41] VERSION="7 (Core)"
[2025-10-12 10:03:41] ID="centos"
[2025-10-12 10:03:41] ID_LIKE="rhel fedora"
[2025-10-12 10:03:41] VERSION_ID="7"
[2025-10-12 10:03:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:03:41] ANSI_COLOR="0;31"
[2025-10-12 10:03:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:03:41] HOME_URL="https://www.centos.org/"
[2025-10-12 10:03:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:03:41] 
[2025-10-12 10:03:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:03:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:03:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:03:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:03:41] 
[2025-10-12 10:03:41] 2025-10-12 08:03:11,309 | INFO     | ***************************************
[2025-10-12 10:03:41] 2025-10-12 08:03:11,812 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 10:03:41] 2025-10-12 08:03:11,825 | INFO     | sufficient remaining disk space (341251719168 B)
[2025-10-12 10:03:41] 2025-10-12 08:03:11,825 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:03:41] 2025-10-12 08:03:11,825 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:03:41] 2025-10-12 08:03:11,825 | INFO     | update_server=False
[2025-10-12 10:03:41] 2025-10-12 08:03:11,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:03:41] 2025-10-12 08:03:11,825 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:03:41] 2025-10-12 08:03:11,866 | INFO     | all data control threads have been joined
[2025-10-12 10:03:41] 2025-10-12 08:03:12,075 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:03:41] 2025-10-12 08:03:12,076 | INFO     | aborting loop
[2025-10-12 10:03:41] 2025-10-12 08:03:12,533 | INFO     | all payload control threads have been joined
[2025-10-12 10:03:41] 2025-10-12 08:03:12,571 | INFO     | all job control threads have been joined
[2025-10-12 10:03:41] 2025-10-12 08:03:12,831 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:12,831 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:12,872 | INFO     | [data] control thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:12,892 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:12,970 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:03:41] 2025-10-12 08:03:12,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:03:41] 2025-10-12 08:03:13,081 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:13,238 | INFO     | [job] validate thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:13,239 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:13,275 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:13,396 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:13,411 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:13,536 | INFO     | [payload] control thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:13,577 | INFO     | [job] control thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:13,708 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:14,186 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:14,976 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:16,996 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:03:41] 2025-10-12 08:03:33,317 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:03:41] 2025-10-12 08:03:35,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140432049338176)>', '<ExcThread(monitor, started 140431169926912)>']
[2025-10-12 10:03:41] 2025-10-12 08:03:40,117 | INFO     | all workflow threads have been joined
[2025-10-12 10:03:41] 2025-10-12 08:03:40,118 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:03:41] 2025-10-12 08:03:40,118 | INFO     | traces error code: 0
[2025-10-12 10:03:41] 2025-10-12 08:03:40,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:03:41] 2025-10-12 08:03:41,598 | INFO     | PID=1700817 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 10:03:41] 2025-10-12 08:03:41,599 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:03:41] 2025-10-12 08:03:41,599 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:03:41] 2025-10-12 08:03:41,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:03:41] 2025-10-12 08:03:41,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:03:41] 2025-10-12 08:03:41,599 | INFO     | [monitor] control thread has ended
[2025-10-12 10:03:41] 2025-10-12 08:03:41,640 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:03:41] 2025-10-12 08:03:41,642 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:03:41] 2025-10-12 08:03:41,644 [wrapper] pilotpid: 1700817
[2025-10-12 10:03:41] 2025-10-12 08:03:41,646 [wrapper] Pilot exit status: 0
[2025-10-12 10:03:41] 2025-10-12 08:03:41,652 [wrapper] pandaids: 6838603293
[2025-10-12 10:03:41] 2025-10-12 08:03:41,665 [wrapper] cleanup supervisor_pilot 1721703 1700818
[2025-10-12 10:03:41] 2025-10-12 08:03:41,667 [wrapper] Test setup, not cleaning
[2025-10-12 10:03:41] 2025-10-12 08:03:41,670 [wrapper] apfmon messages muted
[2025-10-12 10:03:41] 2025-10-12 08:03:41,672 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:03:41] 2025-10-12 08:03:41,674 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:03:41]  *** Error codes and diagnostics ***
[2025-10-12 10:03:41]     "exeErrorCode": 0,
[2025-10-12 10:03:41]     "exeErrorDiag": "",
[2025-10-12 10:03:41]     "pilotErrorCode": 0,
[2025-10-12 10:03:41]     "pilotErrorDiag": "",
[2025-10-12 10:03:41]  *** Listing of results directory ***
[2025-10-12 10:03:41] total 415664
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc    557409 Oct 11 17:05 pilot3.tar.gz
[2025-10-12 10:03:41] -rwx------ 1 boinc boinc     36292 Oct 11 17:06 runpilot2-wrapper.sh
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc      5112 Oct 11 17:06 queuedata.json
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc       100 Oct 12 07:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:03:41] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 07:56 run_atlas
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc       105 Oct 12 07:56 job.xml
[2025-10-12 10:03:41] -rw-r--r-- 2 boinc boinc 223491191 Oct 12 07:56 EVNT.46676267._002396.pool.root.1
[2025-10-12 10:03:41] -rw-r--r-- 2 boinc boinc    569680 Oct 12 07:56 input.tar.gz
[2025-10-12 10:03:41] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:56 start_atlas.sh
[2025-10-12 10:03:41] drwxrwx--x 2 boinc boinc      4096 Oct 12 07:56 shared
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:56 boinc_setup_complete
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc      6206 Oct 12 07:56 init_data.xml
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:56 boinc_lockfile
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc      2550 Oct 12 07:56 pandaJob.out
[2025-10-12 10:03:41] -rw------- 1 boinc boinc    975528 Oct 12 07:56 agis_schedconf.cvmfs.json
[2025-10-12 10:03:41] -rw------- 1 boinc boinc   1560580 Oct 12 07:56 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:03:41] drwx------ 5 boinc boinc      4096 Oct 12 07:56 pilot3
[2025-10-12 10:03:41] -rw------- 1 boinc boinc 195512285 Oct 12 10:02 HITS.46676269._060011.pool.root.1
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc       529 Oct 12 10:02 boinc_task_state.xml
[2025-10-12 10:03:41] -rw------- 1 boinc boinc        95 Oct 12 10:02 pilot_heartbeat.json
[2025-10-12 10:03:41] -rw------- 1 boinc boinc      1017 Oct 12 10:02 memory_monitor_summary.json
[2025-10-12 10:03:41] -rw------- 1 boinc boinc    277462 Oct 12 10:03 log.46676269._060011.job.log.tgz.1
[2025-10-12 10:03:41] -rw------- 1 boinc boinc      7757 Oct 12 10:03 heartbeat.json
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc        27 Oct 12 10:03 wrapper_checkpoint.txt
[2025-10-12 10:03:41] -rw------- 1 boinc boinc       747 Oct 12 10:03 pilotlog.txt
[2025-10-12 10:03:41] -rw------- 1 boinc boinc   1097013 Oct 12 10:03 log.46676269._060011.job.log.1
[2025-10-12 10:03:41] -rw------- 1 boinc boinc       357 Oct 12 10:03 output.list
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc       620 Oct 12 10:03 runtime_log
[2025-10-12 10:03:41] -rw------- 1 boinc boinc   1392640 Oct 12 10:03 result.tar.gz
[2025-10-12 10:03:41] -rw------- 1 boinc boinc       662 Oct 12 10:03 xlEMDm1LqR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmF8RMDmx95Ztn.diag
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc      8792 Oct 12 10:03 runtime_log.err
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc      8192 Oct 12 10:03 boinc_mmap_file
[2025-10-12 10:03:41] -rw-r--r-- 1 boinc boinc     11621 Oct 12 10:03 stderr.txt
[2025-10-12 10:03:41] HITS file was successfully produced:
[2025-10-12 10:03:41] -rw------- 1 boinc boinc 195512285 Oct 12 10:02 shared/HITS.pool.root.1
[2025-10-12 10:03:41]  *** Contents of shared directory: ***
[2025-10-12 10:03:41] total 411132
[2025-10-12 10:03:41] -rw-r--r-- 2 boinc boinc 223491191 Oct 12 07:56 ATLAS.root_0
[2025-10-12 10:03:41] -rw-r--r-- 2 boinc boinc    569680 Oct 12 07:56 input.tar.gz
[2025-10-12 10:03:41] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:56 start_atlas.sh
[2025-10-12 10:03:41] -rw------- 1 boinc boinc 195512285 Oct 12 10:02 HITS.pool.root.1
[2025-10-12 10:03:41] -rw------- 1 boinc boinc   1392640 Oct 12 10:03 result.tar.gz
10:04:03 (1697116): run_atlas exited; CPU time 14820.065569
10:04:03 (1697116): called boinc_finish(0)

</stderr_txt>
]]>

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