Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:34:13 (3466643): wrapper (7.7.26015): starting
12:34:13 (3466643): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 12:34:13] Arguments: --nthreads 4
[2025-10-12 12:34:13] Threads: 4
[2025-10-12 12:34:13] Checking for CVMFS
[2025-10-12 12:34:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:34:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:34:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:34:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:34:14] 2.13.2.0 1261730 1810 50964 151602 0 188 3686129 6144000 2733 130560 0 4844264 99.997 58943 95 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2025-10-12 12:34:14] CVMFS is ok
[2025-10-12 12:34:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:34:14] Checking for apptainer binary...
[2025-10-12 12:34:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:34:14] Running /usr/bin/apptainer --version
[2025-10-12 12:34:14] apptainer version 1.4.0
[2025-10-12 12:34:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:34:14] Zen
[2025-10-12 12:34:14] apptainer works
[2025-10-12 12:34:14] Set ATHENA_PROC_NUMBER=4
[2025-10-12 12:34:14] Set ATHENA_CORE_NUMBER=4
[2025-10-12 12:34:14] Starting ATLAS job with PandaID=6838603095
[2025-10-12 12:34:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:14:52]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:14:52]  mtime=0
[2025-10-12 14:14:52]  protocol_id=None
[2025-10-12 14:14:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 14:14:52]  replicas=None
[2025-10-12 14:14:52]  scope=mc23_13p6TeV
[2025-10-12 14:14:52]  status=None
[2025-10-12 14:14:52]  status_code=0
[2025-10-12 14:14:52]  storage_token=
[2025-10-12 14:14:52]  surl=/home/michael/Boinc/BOINC/slots/5/PanDA_Pilot-6838603095/log.46676269._059852.job.log.tgz.1
[2025-10-12 14:14:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/ed/log.46676269._059852.job.log.tgz.1
[2025-10-12 14:14:52]  workdir=None
[2025-10-12 14:14:52] ]
[2025-10-12 14:14:52] 2025-10-12 03:14:14,729 | INFO     | transferring file log.46676269._059852.job.log.tgz.1 from /home/michael/Boinc/BOINC/slots/5/PanDA_Pilot-6838603095/log.46676269._059852.job.log.tgz.1 to /home/mich
[2025-10-12 14:14:52] 2025-10-12 03:14:14,729 | INFO     | executing command: /usr/bin/env mv /home/michael/Boinc/BOINC/slots/5/PanDA_Pilot-6838603095/log.46676269._059852.job.log.tgz.1 /home/michael/Boinc/BOINC/slots/5/lo
[2025-10-12 14:14:52] 2025-10-12 03:14:14,745 | INFO     | adding to output.list: log.46676269._059852.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/ed/log.46676269._059852.job.log.tg
[2025-10-12 14:14:52] 2025-10-12 03:14:14,746 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 14:14:52] 2025-10-12 03:14:14,746 | INFO     | summary of transferred files:
[2025-10-12 14:14:52] 2025-10-12 03:14:14,746 | INFO     |  -- lfn=log.46676269._059852.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 14:14:52] 2025-10-12 03:14:14,746 | INFO     | stage-out finished correctly
[2025-10-12 14:14:52] 2025-10-12 03:14:15,367 | INFO     | time since job start (5988s) is within the limit (172800.0s)
[2025-10-12 14:14:52] 2025-10-12 03:14:16,407 | INFO     | monitor loop #453: job 0:6838603095 is in state 'finished'
[2025-10-12 14:14:52] 2025-10-12 03:14:16,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:14:52] 2025-10-12 03:14:17,372 | INFO     | time since job start (5990s) is within the limit (172800.0s)
[2025-10-12 14:14:52] 2025-10-12 03:14:17,789 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 14:14:52] 2025-10-12 03:14:17,849 | INFO     | job 6838603095 has state=finished
[2025-10-12 14:14:52] 2025-10-12 03:14:17,849 | INFO     | preparing for final server update for job 6838603095 in state='finished'
[2025-10-12 14:14:52] 2025-10-12 03:14:17,850 | INFO     | this job has now completed (state=finished)
[2025-10-12 14:14:52] 2025-10-12 03:14:17,850 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 14:14:52] 2025-10-12 03:14:17,850 | INFO     | log transfer has been attempted: DONE
[2025-10-12 14:14:52] 2025-10-12 03:14:17,850 | INFO     | job 6838603095 has finished - writing final server update
[2025-10-12 14:14:52] 2025-10-12 03:14:17,850 | INFO     | total number of processed events: 400 (read)
[2025-10-12 14:14:52] 2025-10-12 03:14:17,851 | INFO     | executing command: lscpu
[2025-10-12 14:14:52] 2025-10-12 03:14:17,873 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 14:14:52] 2025-10-12 03:14:18,911 | INFO     | monitor loop #454: job 0:6838603095 is in state 'finished'
[2025-10-12 14:14:52] 2025-10-12 03:14:18,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:14:52] 2025-10-12 03:14:19,378 | INFO     | time since job start (5992s) is within the limit (172800.0s)
[2025-10-12 14:14:52] 2025-10-12 03:14:20,525 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 14:14:52] 2025-10-12 03:14:20,528 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4383.511583333335
[2025-10-12 14:14:52] 2025-10-12 03:14:20,531 | INFO     | using path: /home/michael/Boinc/BOINC/slots/5/PanDA_Pilot-6838603095/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:14:52] 2025-10-12 03:14:20,532 | INFO     | extracted standard info from prmon json
[2025-10-12 14:14:52] 2025-10-12 03:14:20,532 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:14:52] 2025-10-12 03:14:20,532 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:14:52] 2025-10-12 03:14:20,532 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:14:52] 2025-10-12 03:14:20,532 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:14:52] 2025-10-12 03:14:20,534 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:14:52] 2025-10-12 03:14:20,534 | INFO     | sum of square deviations: 233641590.0
[2025-10-12 14:14:52] 2025-10-12 03:14:20,534 | INFO     | sum of deviations: -5265931750.0
[2025-10-12 14:14:52] 2025-10-12 03:14:20,534 | INFO     | mean x: 1760235938.0
[2025-10-12 14:14:52] 2025-10-12 03:14:20,534 | INFO     | mean y: 2372485.164835165
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | -- intersect: 39675456003.40845
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | intersect: 39675456003.40845
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | chi2: 0.01094239125263291
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | -- intersect: 39675456003.40845
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | current memory leak: -22.54 B/s (using 91 data points, chi2=0.01)
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | could have reported an average CPU frequency of 4154 MHz (7 samples)
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | ..............................
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | . Timing measurements:
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | . get job = 0 s
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | . initial setup = 6 s
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | . payload setup = 4 s
[2025-10-12 14:14:52] 2025-10-12 03:14:20,535 | INFO     | . stage-in = 0 s
[2025-10-12 14:14:52] 2025-10-12 03:14:20,536 | INFO     | . payload execution = 5966 s
[2025-10-12 14:14:52] 2025-10-12 03:14:20,536 | INFO     | . stage-out = 0 s
[2025-10-12 14:14:52] 2025-10-12 03:14:20,536 | INFO     | . log creation = 0 s
[2025-10-12 14:14:52] 2025-10-12 03:14:20,536 | INFO     | ..............................
[2025-10-12 14:14:52] 2025-10-12 03:14:20,598 | INFO     | 
[2025-10-12 14:14:52] 2025-10-12 03:14:20,598 | INFO     | job summary report
[2025-10-12 14:14:52] 2025-10-12 03:14:20,598 | INFO     | --------------------------------------------------
[2025-10-12 14:14:52] 2025-10-12 03:14:20,598 | INFO     | PanDA job id: 6838603095
[2025-10-12 14:14:52] 2025-10-12 03:14:20,598 | INFO     | task id: 46676269
[2025-10-12 14:14:52] 2025-10-12 03:14:20,598 | INFO     | errors: (none)
[2025-10-12 14:14:52] 2025-10-12 03:14:20,598 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:14:52] 2025-10-12 03:14:20,598 | INFO     | pilot state: finished 
[2025-10-12 14:14:52] 2025-10-12 03:14:20,598 | INFO     | transexitcode: 0
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | exeerrorcode: 0
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | exeerrordiag: 
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | exitcode: 0
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | exitmsg: OK
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | cpuconsumptiontime: 22868 s
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | nevents: 400
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | neventsw: 0
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | pid: 3477025
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | pgrp: 3477025
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | corecount: 4
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | event service: False
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | sizes: {0: 2348866, 3: 2349128, 11: 2349156, 5974: 2385035, 5977: 2385035, 5980: 2385229}
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | --------------------------------------------------
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | 
[2025-10-12 14:14:52] 2025-10-12 03:14:20,599 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/5
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,617 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,617 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,617 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,617 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,617 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:14:52] 2025-10-12 03:14:20,617 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,617 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:14:52] 2025-10-12 03:14:20,617 | INFO     | job 6838603095 has completed (purged errors)
[2025-10-12 14:14:52] 2025-10-12 03:14:20,617 | INFO     | overall cleanup function is called
[2025-10-12 14:14:52] 2025-10-12 03:14:21,623 | INFO     | --- collectZombieJob: --- 10, [3477025]
[2025-10-12 14:14:52] 2025-10-12 03:14:21,624 | INFO     | zombie collector waiting for pid 3477025
[2025-10-12 14:14:52] 2025-10-12 03:14:21,624 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:14:52] 2025-10-12 03:14:21,624 | INFO     | collected zombie processes
[2025-10-12 14:14:52] 2025-10-12 03:14:21,624 | INFO     | will attempt to kill all subprocesses of pid=3477025
[2025-10-12 14:14:52] 2025-10-12 03:14:21,785 | INFO     | process IDs to be killed: [3477025] (in reverse order)
[2025-10-12 14:14:52] 2025-10-12 03:14:21,840 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:14:52] 2025-10-12 03:14:21,840 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:14:52] 2025-10-12 03:14:21,844 | INFO     | did not find any defunct processes belonging to 3477025
[2025-10-12 14:14:52] 2025-10-12 03:14:21,848 | INFO     | did not find any defunct processes belonging to 3477025
[2025-10-12 14:14:52] 2025-10-12 03:14:21,848 | INFO     | ready for new job
[2025-10-12 14:14:52] 2025-10-12 03:14:21,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:14:52] 2025-10-12 03:14:21,850 | INFO     | ***************************************
[2025-10-12 14:14:52] 2025-10-12 03:14:21,850 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:14:52] 2025-10-12 03:14:21,850 | INFO     | ***************************************
[2025-10-12 14:14:52] 2025-10-12 03:14:21,850 | INFO     | 
[2025-10-12 14:14:52] 2025-10-12 03:14:21,851 | INFO     | architecture information:
[2025-10-12 14:14:52] 2025-10-12 03:14:21,851 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:14:52] 2025-10-12 03:14:21,866 | INFO     | cat /etc/os-release:
[2025-10-12 14:14:52] NAME="CentOS Linux"
[2025-10-12 14:14:52] VERSION="7 (Core)"
[2025-10-12 14:14:52] ID="centos"
[2025-10-12 14:14:52] ID_LIKE="rhel fedora"
[2025-10-12 14:14:52] VERSION_ID="7"
[2025-10-12 14:14:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:14:52] ANSI_COLOR="0;31"
[2025-10-12 14:14:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:14:52] HOME_URL="https://www.centos.org/"
[2025-10-12 14:14:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:14:52] 
[2025-10-12 14:14:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:14:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:14:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:14:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:14:52] 
[2025-10-12 14:14:52] 2025-10-12 03:14:21,867 | INFO     | ***************************************
[2025-10-12 14:14:52] 2025-10-12 03:14:22,369 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/5
[2025-10-12 14:14:52] 2025-10-12 03:14:22,386 | INFO     | sufficient remaining disk space (207050768384 B)
[2025-10-12 14:14:52] 2025-10-12 03:14:22,387 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:14:52] 2025-10-12 03:14:22,387 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:14:52] 2025-10-12 03:14:22,387 | INFO     | update_server=False
[2025-10-12 14:14:52] 2025-10-12 03:14:22,387 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:14:52] 2025-10-12 03:14:22,387 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:14:52] 2025-10-12 03:14:22,398 | INFO     | all payload control threads have been joined
[2025-10-12 14:14:52] 2025-10-12 03:14:22,418 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:14:52] 2025-10-12 03:14:22,419 | INFO     | aborting loop
[2025-10-12 14:14:52] 2025-10-12 03:14:22,820 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:14:52] 2025-10-12 03:14:22,906 | INFO     | all job control threads have been joined
[2025-10-12 14:14:52] 2025-10-12 03:14:22,970 | INFO     | all data control threads have been joined
[2025-10-12 14:14:52] 2025-10-12 03:14:23,392 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:23,392 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:23,402 | INFO     | [payload] control thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:23,424 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:23,804 | INFO     | [job] validate thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:23,855 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:14:52] 2025-10-12 03:14:23,912 | INFO     | [job] control thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:23,976 | INFO     | [data] control thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:24,007 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:24,107 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:24,149 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:24,327 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:24,336 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:24,338 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:24,825 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:24,955 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:27,860 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:14:52] 2025-10-12 03:14:36,167 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:14:52] 2025-10-12 03:14:37,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133660576044864)>', '<ExcThread(monitor, started 133659709400832)>']
[2025-10-12 14:14:52] 2025-10-12 03:14:42,877 | INFO     | all workflow threads have been joined
[2025-10-12 14:14:52] 2025-10-12 03:14:42,878 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:14:52] 2025-10-12 03:14:42,878 | INFO     | traces error code: 0
[2025-10-12 14:14:52] 2025-10-12 03:14:42,878 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:14:52] 2025-10-12 03:14:52,578 | INFO     | PID=3470445 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:14:52] 2025-10-12 03:14:52,578 | INFO     | .. there are 4 such processes running
[2025-10-12 14:14:52] 2025-10-12 03:14:52,578 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:14:52] 2025-10-12 03:14:52,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:14:52] 2025-10-12 03:14:52,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:14:52] 2025-10-12 03:14:52,578 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:14:52] 2025-10-12 03:14:52,578 | INFO     | [monitor] control thread has ended
[2025-10-12 14:14:52] 2025-10-12 03:14:52,681 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:14:52] 2025-10-12 03:14:52,684 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:14:52] 2025-10-12 03:14:52,686 [wrapper] pilotpid: 3470445
[2025-10-12 14:14:52] 2025-10-12 03:14:52,688 [wrapper] Pilot exit status: 0
[2025-10-12 14:14:52] 2025-10-12 03:14:52,696 [wrapper] pandaids: 6838603095
[2025-10-12 14:14:52] 2025-10-12 03:14:52,732 [wrapper] cleanup supervisor_pilot 3573951 3470446
[2025-10-12 14:14:52] 2025-10-12 03:14:52,734 [wrapper] Test setup, not cleaning
[2025-10-12 14:14:52] 2025-10-12 03:14:52,737 [wrapper] apfmon messages muted
[2025-10-12 14:14:52] 2025-10-12 03:14:52,739 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:14:52] 2025-10-12 03:14:52,741 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:14:52]  *** Error codes and diagnostics ***
[2025-10-12 14:14:52]     "exeErrorCode": 0,
[2025-10-12 14:14:52]     "exeErrorDiag": "",
[2025-10-12 14:14:52]     "pilotErrorCode": 0,
[2025-10-12 14:14:52]     "pilotErrorDiag": "",
[2025-10-12 14:14:52]  *** Listing of results directory ***
[2025-10-12 14:14:52] total 409892
[2025-10-12 14:14:52] -rw-r--r-- 1 michael michael    557409 Oct 12 01:01 pilot3.tar.gz
[2025-10-12 14:14:52] -rw-r--r-- 1 michael michael      5112 Oct 12 02:04 queuedata.json
[2025-10-12 14:14:52] -rwx------ 1 michael michael     36292 Oct 12 02:04 runpilot2-wrapper.sh
[2025-10-12 14:14:52] -rw-rw-r-- 1 michael michael       100 Oct 12 12:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:14:52] -rwxr-xr-x 1 michael michael      7986 Oct 12 12:34 run_atlas
[2025-10-12 14:14:52] -rw-rw-r-- 1 michael michael       105 Oct 12 12:34 job.xml
[2025-10-12 14:14:52] -rw-r--r-- 2 michael michael 219092689 Oct 12 12:34 EVNT.46676267._002381.pool.root.1
[2025-10-12 14:14:52] -rw-rw-r-- 1 michael michael      9816 Oct 12 12:34 init_data.xml
[2025-10-12 14:14:52] drwxrwx--x 2 michael michael      4096 Oct 12 12:34 shared
[2025-10-12 14:14:52] -rw-r--r-- 2 michael michael    569680 Oct 12 12:34 input.tar.gz
[2025-10-12 14:14:52] -rw-r--r-- 2 michael michael     15120 Oct 12 12:34 start_atlas.sh
[2025-10-12 14:14:52] -rw-rw-r-- 1 michael michael         0 Oct 12 12:34 boinc_lockfile
[2025-10-12 14:14:52] -rw-rw-r-- 1 michael michael      2549 Oct 12 12:34 pandaJob.out
[2025-10-12 14:14:52] -rw------- 1 michael michael    975496 Oct 12 12:34 agis_schedconf.cvmfs.json
[2025-10-12 14:14:52] -rw------- 1 michael michael   1560580 Oct 12 12:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:14:52] drwx------ 5 michael michael      4096 Oct 12 12:34 pilot3
[2025-10-12 14:14:52] -rw------- 1 michael michael 194401343 Oct 12 14:13 HITS.46676269._059852.pool.root.1
[2025-10-12 14:14:52] -rw------- 1 michael michael      1023 Oct 12 14:14 memory_monitor_summary.json
[2025-10-12 14:14:52] -rw------- 1 michael michael    273934 Oct 12 14:14 log.46676269._059852.job.log.tgz.1
[2025-10-12 14:14:52] -rw------- 1 michael michael        95 Oct 12 14:14 pilot_heartbeat.json
[2025-10-12 14:14:52] -rw-rw-r-- 1 michael michael       529 Oct 12 14:14 boinc_task_state.xml
[2025-10-12 14:14:52] -rw------- 1 michael michael      7731 Oct 12 14:14 heartbeat.json
[2025-10-12 14:14:52] -rw-rw-r-- 1 michael michael        27 Oct 12 14:14 wrapper_checkpoint.txt
[2025-10-12 14:14:52] -rw-rw-r-- 1 michael michael      8192 Oct 12 14:14 boinc_mmap_file
[2025-10-12 14:14:52] -rw------- 1 michael michael       822 Oct 12 14:14 pilotlog.txt
[2025-10-12 14:14:52] -rw------- 1 michael michael    891593 Oct 12 14:14 log.46676269._059852.job.log.1
[2025-10-12 14:14:52] -rw------- 1 michael michael       357 Oct 12 14:14 output.list
[2025-10-12 14:14:52] -rw-rw-r-- 1 michael michael       620 Oct 12 14:14 runtime_log
[2025-10-12 14:14:52] -rw------- 1 michael michael   1187840 Oct 12 14:14 result.tar.gz
[2025-10-12 14:14:52] -rw-rw-r-- 1 michael michael      8797 Oct 12 14:14 runtime_log.err
[2025-10-12 14:14:52] -rw------- 1 michael michael       640 Oct 12 14:14 ILfLDmtJqR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmI7RMDmbVtzhm.diag
[2025-10-12 14:14:52] -rw-rw-r-- 1 michael michael     21405 Oct 12 14:14 stderr.txt
[2025-10-12 14:14:52] HITS file was successfully produced:
[2025-10-12 14:14:52] -rw------- 1 michael michael 194401343 Oct 12 14:13 shared/HITS.pool.root.1
[2025-10-12 14:14:52]  *** Contents of shared directory: ***
[2025-10-12 14:14:52] total 405548
[2025-10-12 14:14:52] -rw-r--r-- 2 michael michael 219092689 Oct 12 12:34 ATLAS.root_0
[2025-10-12 14:14:52] -rw-r--r-- 2 michael michael    569680 Oct 12 12:34 input.tar.gz
[2025-10-12 14:14:52] -rw-r--r-- 2 michael michael     15120 Oct 12 12:34 start_atlas.sh
[2025-10-12 14:14:52] -rw------- 1 michael michael 194401343 Oct 12 14:13 HITS.pool.root.1
[2025-10-12 14:14:52] -rw------- 1 michael michael   1187840 Oct 12 14:14 result.tar.gz
14:14:54 (3466643): run_atlas exited; CPU time 22925.335646
14:14:54 (3466643): called boinc_finish(0)

</stderr_txt>
]]>

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