Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:48:09 (3188132): wrapper (7.7.26015): starting
12:48:09 (3188132): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 12:48:09] Arguments: --nthreads 6
[2025-10-12 12:48:09] Threads: 6
[2025-10-12 12:48:09] Checking for CVMFS
[2025-10-12 12:48:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:48:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:48:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:48:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:48:10] 2.12.7.0 249871 5350 93776 151606 2 188 13802617 20971521 929 130560 0 9127576 99.995 187416 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 12:48:10] CVMFS is ok
[2025-10-12 12:48:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:48:10] Checking for apptainer binary...
[2025-10-12 12:48:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:48:10] Running /usr/bin/apptainer --version
[2025-10-12 12:48:10] apptainer version 1.4.0-1.el9
[2025-10-12 12:48:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:48:10] testio005
[2025-10-12 12:48:10] apptainer works
[2025-10-12 12:48:10] Set ATHENA_PROC_NUMBER=6
[2025-10-12 12:48:10] Set ATHENA_CORE_NUMBER=6
[2025-10-12 12:48:10] Starting ATLAS job with PandaID=6838366441
[2025-10-12 12:48:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:20:47]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:20:47] 2025-10-12 05:19:30,045 | INFO     | time since job start (5470s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:32,050 | INFO     | time since job start (5472s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:34,056 | INFO     | time since job start (5474s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:36,061 | INFO     | time since job start (5476s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:38,066 | INFO     | time since job start (5478s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:40,068 | INFO     | time since job start (5480s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:42,074 | INFO     | time since job start (5482s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:43,219 | INFO     | PID=3191910 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:20:47] 2025-10-12 05:19:43,219 | INFO     | .. there are 2 such processes running
[2025-10-12 14:20:47] 2025-10-12 05:19:44,219 | INFO     | time since job start (5484s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:46,220 | INFO     | time since job start (5486s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:48,225 | INFO     | time since job start (5488s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:50,230 | INFO     | time since job start (5490s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:52,236 | INFO     | time since job start (5492s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:54,241 | INFO     | time since job start (5494s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:56,243 | INFO     | time since job start (5496s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:19:58,246 | INFO     | time since job start (5498s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:20:00,252 | INFO     | time since job start (5500s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:20:02,257 | INFO     | time since job start (5502s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:20:04,263 | INFO     | time since job start (5504s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:20:05,374 | INFO     | PID=3191910 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:20:47] 2025-10-12 05:20:05,374 | INFO     | .. there are 2 such processes running
[2025-10-12 14:20:47] 2025-10-12 05:20:06,375 | INFO     | time since job start (5506s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:20:08,380 | INFO     | time since job start (5508s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:20:10,386 | INFO     | time since job start (5510s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:20:12,391 | INFO     | time since job start (5512s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:20:14,397 | INFO     | time since job start (5514s) is within the limit (172800.0s)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,207 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 14:20:47] 2025-10-12 05:20:16,215 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3316.599875
[2025-10-12 14:20:47] 2025-10-12 05:20:16,218 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838366441/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,218 | INFO     | sufficient remaining disk space (96606355456 B)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,219 | INFO     | extracted standard info from prmon json
[2025-10-12 14:20:47] 2025-10-12 05:20:16,219 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,219 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:20:47] 2025-10-12 05:20:16,220 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:20:47] 2025-10-12 05:20:16,220 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:20:47] 2025-10-12 05:20:16,220 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:20:47] 2025-10-12 05:20:16,222 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:20:47] 2025-10-12 05:20:16,223 | INFO     | sum of square deviations: 170944600.5
[2025-10-12 14:20:47] 2025-10-12 05:20:16,223 | INFO     | sum of deviations: -2213251928.5
[2025-10-12 14:20:47] 2025-10-12 05:20:16,223 | INFO     | mean x: 1760243698.5
[2025-10-12 14:20:47] 2025-10-12 05:20:16,223 | INFO     | mean y: 2486772.6463414636
[2025-10-12 14:20:47] 2025-10-12 05:20:16,224 | INFO     | -- intersect: 22792693359.692642
[2025-10-12 14:20:47] 2025-10-12 05:20:16,224 | INFO     | intersect: 22792693359.692642
[2025-10-12 14:20:47] 2025-10-12 05:20:16,224 | INFO     | chi2: 0.05522030086378177
[2025-10-12 14:20:47] 2025-10-12 05:20:16,224 | INFO     | -- intersect: 22792693359.692642
[2025-10-12 14:20:47] 2025-10-12 05:20:16,224 | INFO     | current memory leak: -12.95 B/s (using 82 data points, chi2=0.06)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,225 | INFO     | could have reported an average CPU frequency of 3329 MHz (6 samples)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,225 | INFO     | ..............................
[2025-10-12 14:20:47] 2025-10-12 05:20:16,225 | INFO     | . Timing measurements:
[2025-10-12 14:20:47] 2025-10-12 05:20:16,225 | INFO     | . get job = 0 s
[2025-10-12 14:20:47] 2025-10-12 05:20:16,225 | INFO     | . initial setup = 4 s
[2025-10-12 14:20:47] 2025-10-12 05:20:16,226 | INFO     | . payload setup = 4 s
[2025-10-12 14:20:47] 2025-10-12 05:20:16,226 | INFO     | . stage-in = 0 s
[2025-10-12 14:20:47] 2025-10-12 05:20:16,226 | INFO     | . payload execution = 5429 s
[2025-10-12 14:20:47] 2025-10-12 05:20:16,226 | INFO     | . stage-out = 0 s
[2025-10-12 14:20:47] 2025-10-12 05:20:16,226 | INFO     | . log creation = 0 s
[2025-10-12 14:20:47] 2025-10-12 05:20:16,226 | INFO     | ..............................
[2025-10-12 14:20:47] 2025-10-12 05:20:16,227 | INFO     | size of work directory /var/lib/boinc/slots/1/PanDA_Pilot-6838366441: 3309717 B (within 2537553920 B limit)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,248 | INFO     | pfn file=/var/lib/boinc/slots/1/PanDA_Pilot-6838366441/HITS.46676269._057324.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,258 | INFO     | total size of present files: 0 B (workdir size: 3309717 B)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,279 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/1/PanDA_Pilot-6838366441/HITS.46676269._057324.pool.root.1 since it does not exist
[2025-10-12 14:20:47] 2025-10-12 05:20:16,298 | INFO     | 
[2025-10-12 14:20:47] 2025-10-12 05:20:16,298 | INFO     | job summary report
[2025-10-12 14:20:47] 2025-10-12 05:20:16,298 | INFO     | --------------------------------------------------
[2025-10-12 14:20:47] 2025-10-12 05:20:16,298 | INFO     | PanDA job id: 6838366441
[2025-10-12 14:20:47] 2025-10-12 05:20:16,298 | INFO     | task id: 46676269
[2025-10-12 14:20:47] 2025-10-12 05:20:16,298 | INFO     | errors: (none)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,298 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:20:47] 2025-10-12 05:20:16,299 | INFO     | pilot state: finished 
[2025-10-12 14:20:47] 2025-10-12 05:20:16,299 | INFO     | transexitcode: 0
[2025-10-12 14:20:47] 2025-10-12 05:20:16,299 | INFO     | exeerrorcode: 0
[2025-10-12 14:20:47] 2025-10-12 05:20:16,299 | INFO     | exeerrordiag: 
[2025-10-12 14:20:47] 2025-10-12 05:20:16,299 | INFO     | exitcode: 0
[2025-10-12 14:20:47] 2025-10-12 05:20:16,299 | INFO     | exitmsg: OK
[2025-10-12 14:20:47] 2025-10-12 05:20:16,299 | INFO     | cpuconsumptiontime: 30107 s
[2025-10-12 14:20:47] 2025-10-12 05:20:16,299 | INFO     | nevents: 400
[2025-10-12 14:20:47] 2025-10-12 05:20:16,300 | INFO     | neventsw: 0
[2025-10-12 14:20:47] 2025-10-12 05:20:16,300 | INFO     | pid: 3198661
[2025-10-12 14:20:47] 2025-10-12 05:20:16,300 | INFO     | pgrp: 3198661
[2025-10-12 14:20:47] 2025-10-12 05:20:16,300 | INFO     | corecount: 6
[2025-10-12 14:20:47] 2025-10-12 05:20:16,300 | INFO     | event service: False
[2025-10-12 14:20:47] 2025-10-12 05:20:16,300 | INFO     | sizes: {0: 2348029, 1: 2348885, 4: 2349147, 12: 2349175, 5436: 2375746, 5437: 2384744, 5440: 2384928, 5501: 2385150}
[2025-10-12 14:20:47] 2025-10-12 05:20:16,300 | INFO     | --------------------------------------------------
[2025-10-12 14:20:47] 2025-10-12 05:20:16,301 | INFO     | 
[2025-10-12 14:20:47] 2025-10-12 05:20:16,301 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-12 14:20:47] 2025-10-12 05:20:16,316 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,316 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,316 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,316 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,316 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,317 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,318 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:20:47] 2025-10-12 05:20:16,318 | INFO     | job 6838366441 has completed (purged errors)
[2025-10-12 14:20:47] 2025-10-12 05:20:16,318 | INFO     | overall cleanup function is called
[2025-10-12 14:20:47] 2025-10-12 05:20:16,390 | INFO     | number of running child processes to parent process 3198661: 1
[2025-10-12 14:20:47] 2025-10-12 05:20:16,390 | INFO     | maximum number of monitored processes: 6
[2025-10-12 14:20:47] 2025-10-12 05:20:16,390 | INFO     | aborting job monitoring since job object (job id=6838366441) has expired
[2025-10-12 14:20:47] 2025-10-12 05:20:17,325 | INFO     | --- collectZombieJob: --- 10, [3198661]
[2025-10-12 14:20:47] 2025-10-12 05:20:17,325 | INFO     | zombie collector waiting for pid 3198661
[2025-10-12 14:20:47] 2025-10-12 05:20:17,325 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:20:47] 2025-10-12 05:20:17,326 | INFO     | collected zombie processes
[2025-10-12 14:20:47] 2025-10-12 05:20:17,326 | INFO     | will attempt to kill all subprocesses of pid=3198661
[2025-10-12 14:20:47] 2025-10-12 05:20:17,401 | INFO     | process IDs to be killed: [3198661] (in reverse order)
[2025-10-12 14:20:47] 2025-10-12 05:20:17,435 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:20:47] 2025-10-12 05:20:17,436 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:20:47] 2025-10-12 05:20:17,439 | INFO     | did not find any defunct processes belonging to 3198661
[2025-10-12 14:20:47] 2025-10-12 05:20:17,442 | INFO     | did not find any defunct processes belonging to 3198661
[2025-10-12 14:20:47] 2025-10-12 05:20:17,443 | INFO     | ready for new job
[2025-10-12 14:20:47] 2025-10-12 05:20:17,443 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:20:47] 2025-10-12 05:20:17,444 | INFO     | ***************************************
[2025-10-12 14:20:47] 2025-10-12 05:20:17,444 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:20:47] 2025-10-12 05:20:17,444 | INFO     | ***************************************
[2025-10-12 14:20:47] 2025-10-12 05:20:17,444 | INFO     | 
[2025-10-12 14:20:47] 2025-10-12 05:20:17,445 | INFO     | architecture information:
[2025-10-12 14:20:47] 2025-10-12 05:20:17,446 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:20:47] 2025-10-12 05:20:17,456 | INFO     | cat /etc/os-release:
[2025-10-12 14:20:47] NAME="CentOS Linux"
[2025-10-12 14:20:47] VERSION="7 (Core)"
[2025-10-12 14:20:47] ID="centos"
[2025-10-12 14:20:47] ID_LIKE="rhel fedora"
[2025-10-12 14:20:47] VERSION_ID="7"
[2025-10-12 14:20:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:20:47] ANSI_COLOR="0;31"
[2025-10-12 14:20:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:20:47] HOME_URL="https://www.centos.org/"
[2025-10-12 14:20:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:20:47] 
[2025-10-12 14:20:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:20:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:20:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:20:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:20:47] 
[2025-10-12 14:20:47] 2025-10-12 05:20:17,457 | INFO     | ***************************************
[2025-10-12 14:20:47] 2025-10-12 05:20:17,959 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 14:20:47] 2025-10-12 05:20:17,971 | INFO     | sufficient remaining disk space (96610549760 B)
[2025-10-12 14:20:47] 2025-10-12 05:20:17,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:20:47] 2025-10-12 05:20:17,971 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:20:47] 2025-10-12 05:20:17,971 | INFO     | update_server=False
[2025-10-12 14:20:47] 2025-10-12 05:20:17,971 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:20:47] 2025-10-12 05:20:17,972 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:20:47] 2025-10-12 05:20:17,972 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:20:47] 2025-10-12 05:20:17,972 | INFO     | aborting loop
[2025-10-12 14:20:47] 2025-10-12 05:20:18,025 | INFO     | all data control threads have been joined
[2025-10-12 14:20:47] 2025-10-12 05:20:18,271 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:20:47] 2025-10-12 05:20:18,976 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:18,977 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:18,977 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:19,031 | INFO     | [data] control thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:19,063 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:19,078 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:19,175 | INFO     | all job control threads have been joined
[2025-10-12 14:20:47] 2025-10-12 05:20:19,329 | INFO     | all payload control threads have been joined
[2025-10-12 14:20:47] 2025-10-12 05:20:19,618 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:20,075 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:20,181 | INFO     | [job] control thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:20,203 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:20,227 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:20:47] 2025-10-12 05:20:20,277 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:20,294 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:20,334 | INFO     | [payload] control thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:20,336 | INFO     | [job] validate thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:20,451 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:24,233 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:20:47] 2025-10-12 05:20:28,119 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:20:47] 2025-10-12 05:20:29,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139736230348608)>', '<ExcThread(monitor, started 139735603336960)>']
[2025-10-12 14:20:47] 2025-10-12 05:20:34,094 | INFO     | all workflow threads have been joined
[2025-10-12 14:20:47] 2025-10-12 05:20:34,094 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:20:47] 2025-10-12 05:20:34,095 | INFO     | traces error code: 0
[2025-10-12 14:20:47] 2025-10-12 05:20:34,095 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:20:47] 2025-10-12 05:20:47,581 | INFO     | PID=3191910 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:20:47] 2025-10-12 05:20:47,581 | INFO     | .. there are 2 such processes running
[2025-10-12 14:20:47] 2025-10-12 05:20:47,581 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:20:47] 2025-10-12 05:20:47,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:20:47] 2025-10-12 05:20:47,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:20:47] 2025-10-12 05:20:47,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:20:47] 2025-10-12 05:20:47,581 | INFO     | [monitor] control thread has ended
[2025-10-12 14:20:47] 2025-10-12 05:20:47,656 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:20:47] 2025-10-12 05:20:47,658 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:20:47] 2025-10-12 05:20:47,660 [wrapper] pilotpid: 3191910
[2025-10-12 14:20:47] 2025-10-12 05:20:47,662 [wrapper] Pilot exit status: 0
[2025-10-12 14:20:47] 2025-10-12 05:20:47,670 [wrapper] pandaids: 6838366441
[2025-10-12 14:20:47] 2025-10-12 05:20:47,693 [wrapper] cleanup supervisor_pilot 3235673 3191911
[2025-10-12 14:20:47] 2025-10-12 05:20:47,695 [wrapper] Test setup, not cleaning
[2025-10-12 14:20:47] 2025-10-12 05:20:47,698 [wrapper] apfmon messages muted
[2025-10-12 14:20:47] 2025-10-12 05:20:47,700 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:20:47] 2025-10-12 05:20:47,702 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:20:47]  *** Error codes and diagnostics ***
[2025-10-12 14:20:47]     "exeErrorCode": 0,
[2025-10-12 14:20:47]     "exeErrorDiag": "",
[2025-10-12 14:20:47]     "pilotErrorCode": 0,
[2025-10-12 14:20:47]     "pilotErrorDiag": "",
[2025-10-12 14:20:47]  *** Listing of results directory ***
[2025-10-12 14:20:47] total 413412
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc    557409 Oct 11 20:21 pilot3.tar.gz
[2025-10-12 14:20:47] -rwx------. 1 boinc boinc     36292 Oct 11 20:59 runpilot2-wrapper.sh
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc      5112 Oct 11 20:59 queuedata.json
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc       100 Oct 12 12:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:20:47] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 12:48 run_atlas
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc       105 Oct 12 12:48 job.xml
[2025-10-12 14:20:47] -rw-r--r--. 2 boinc boinc 220302360 Oct 12 12:48 EVNT.46676267._002301.pool.root.1
[2025-10-12 14:20:47] -rw-r--r--. 2 boinc boinc     15120 Oct 12 12:48 start_atlas.sh
[2025-10-12 14:20:47] drwxrwx--x. 2 boinc boinc        68 Oct 12 12:48 shared
[2025-10-12 14:20:47] -rw-r--r--. 2 boinc boinc    569675 Oct 12 12:48 input.tar.gz
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc      9362 Oct 12 12:48 init_data.xml
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc         0 Oct 12 12:48 boinc_lockfile
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc      2550 Oct 12 12:48 pandaJob.out
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc    975512 Oct 12 12:48 agis_schedconf.cvmfs.json
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc   1560580 Oct 12 12:48 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:20:47] drwx------. 5 boinc boinc      4096 Oct 12 12:48 pilot3
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc 196925508 Oct 12 14:18 HITS.46676269._057324.pool.root.1
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc       529 Oct 12 14:18 boinc_task_state.xml
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc      1018 Oct 12 14:19 memory_monitor_summary.json
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc    310881 Oct 12 14:19 log.46676269._057324.job.log.tgz.1
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc        95 Oct 12 14:20 pilot_heartbeat.json
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc      7747 Oct 12 14:20 heartbeat.json
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc      8192 Oct 12 14:20 boinc_mmap_file
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc        27 Oct 12 14:20 wrapper_checkpoint.txt
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc       822 Oct 12 14:20 pilotlog.txt
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc    800016 Oct 12 14:20 log.46676269._057324.job.log.1
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc       357 Oct 12 14:20 output.list
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc       620 Oct 12 14:20 runtime_log
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc   1126400 Oct 12 14:20 result.tar.gz
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc      8661 Oct 12 14:20 runtime_log.err
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc       642 Oct 12 14:20 hmpMDmwQnR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCOgNDm0Tdfsn.diag
[2025-10-12 14:20:47] -rw-r--r--. 1 boinc boinc     22099 Oct 12 14:20 stderr.txt
[2025-10-12 14:20:47] HITS file was successfully produced:
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc 196925508 Oct 12 14:18 shared/HITS.pool.root.1
[2025-10-12 14:20:47]  *** Contents of shared directory: ***
[2025-10-12 14:20:47] total 409128
[2025-10-12 14:20:47] -rw-r--r--. 2 boinc boinc 220302360 Oct 12 12:48 ATLAS.root_0
[2025-10-12 14:20:47] -rw-r--r--. 2 boinc boinc     15120 Oct 12 12:48 start_atlas.sh
[2025-10-12 14:20:47] -rw-r--r--. 2 boinc boinc    569675 Oct 12 12:48 input.tar.gz
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc 196925508 Oct 12 14:18 HITS.pool.root.1
[2025-10-12 14:20:47] -rw-------. 1 boinc boinc   1126400 Oct 12 14:20 result.tar.gz
14:20:49 (3188132): run_atlas exited; CPU time 30166.895271
14:20:49 (3188132): called boinc_finish(0)

</stderr_txt>
]]>

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