Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:45:02 (1743022): wrapper (7.7.26015): starting
06:45:02 (1743022): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 06:45:02] Arguments: --nthreads 3
[2025-10-12 06:45:02] Threads: 3
[2025-10-12 06:45:02] Checking for CVMFS
[2025-10-12 06:45:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:45:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:45:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:45:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:45:02] 2.9.2.0 570712 3814 82704 151608 1 57 30530269 36864000 0 130560 0 3090140 99.991 130793 1014 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 06:45:02] CVMFS is ok
[2025-10-12 06:45:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 06:45:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 06:45:02] Further information can be found at the LHC@home message board.
[2025-10-12 06:45:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:45:02] Checking for apptainer binary...
[2025-10-12 06:45:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 06:45:02] Running /usr/bin/apptainer --version
[2025-10-12 06:45:02] apptainer version 1.4.1-1.1
[2025-10-12 06:45:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:45:03] magicA161a
[2025-10-12 06:45:03] apptainer works
[2025-10-12 06:45:03] Set ATHENA_PROC_NUMBER=3
[2025-10-12 06:45:03] Set ATHENA_CORE_NUMBER=3
[2025-10-12 06:45:03] Starting ATLAS job with PandaID=6838454890
[2025-10-12 06:45:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 08:04:22]  *** The last 200 lines of the pilot log: ***
[2025-10-12 08:04:22] 2025-10-12 06:03:51,217 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 08:04:22] 2025-10-12 06:03:51,217 | INFO     | collected zombie processes
[2025-10-12 08:04:22] 2025-10-12 06:03:51,217 | INFO     | will attempt to kill all subprocesses of pid=1753171
[2025-10-12 08:04:22] 2025-10-12 06:03:51,259 | INFO     | process IDs to be killed: [1753171] (in reverse order)
[2025-10-12 08:04:22] 2025-10-12 06:03:51,283 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 08:04:22] 2025-10-12 06:03:51,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 08:04:22] 2025-10-12 06:03:51,284 | INFO     | did not find any defunct processes belonging to 1753171
[2025-10-12 08:04:22] 2025-10-12 06:03:51,285 | INFO     | did not find any defunct processes belonging to 1753171
[2025-10-12 08:04:22] 2025-10-12 06:03:51,285 | INFO     | ready for new job
[2025-10-12 08:04:22] 2025-10-12 06:03:51,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 08:04:22] 2025-10-12 06:03:51,286 | INFO     | ***************************************
[2025-10-12 08:04:22] 2025-10-12 06:03:51,286 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 08:04:22] 2025-10-12 06:03:51,286 | INFO     | ***************************************
[2025-10-12 08:04:22] 2025-10-12 06:03:51,286 | INFO     | 
[2025-10-12 08:04:22] 2025-10-12 06:03:51,287 | INFO     | architecture information:
[2025-10-12 08:04:22] 2025-10-12 06:03:51,287 | INFO     | executing command: cat /etc/os-release
[2025-10-12 08:04:22] 2025-10-12 06:03:51,295 | INFO     | cat /etc/os-release:
[2025-10-12 08:04:22] NAME="CentOS Linux"
[2025-10-12 08:04:22] VERSION="7 (Core)"
[2025-10-12 08:04:22] ID="centos"
[2025-10-12 08:04:22] ID_LIKE="rhel fedora"
[2025-10-12 08:04:22] VERSION_ID="7"
[2025-10-12 08:04:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 08:04:22] ANSI_COLOR="0;31"
[2025-10-12 08:04:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 08:04:22] HOME_URL="https://www.centos.org/"
[2025-10-12 08:04:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 08:04:22] 
[2025-10-12 08:04:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 08:04:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 08:04:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 08:04:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 08:04:22] 
[2025-10-12 08:04:22] 2025-10-12 06:03:51,295 | INFO     | ***************************************
[2025-10-12 08:04:22] 2025-10-12 06:03:51,796 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 08:04:22] 2025-10-12 06:03:51,808 | INFO     | sufficient remaining disk space (374129819648 B)
[2025-10-12 08:04:22] 2025-10-12 06:03:51,808 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 08:04:22] 2025-10-12 06:03:51,809 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 08:04:22] 2025-10-12 06:03:51,809 | INFO     | update_server=False
[2025-10-12 08:04:22] 2025-10-12 06:03:51,809 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 08:04:22] 2025-10-12 06:03:51,809 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 08:04:22] 2025-10-12 06:03:51,809 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:04:22] 2025-10-12 06:03:51,809 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:04:22] 2025-10-12 06:03:51,809 | INFO     | aborting loop
[2025-10-12 08:04:22] 2025-10-12 06:03:52,093 | INFO     | all job control threads have been joined
[2025-10-12 08:04:22] 2025-10-12 06:03:52,399 | INFO     | all data control threads have been joined
[2025-10-12 08:04:22] 2025-10-12 06:03:52,597 | INFO     | all payload control threads have been joined
[2025-10-12 08:04:22] 2025-10-12 06:03:52,812 | INFO     | [job] queue monitor thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:52,814 | INFO     | [job] retrieve thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:52,814 | INFO     | [job] job monitor thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:52,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 08:04:22] 2025-10-12 06:03:53,098 | INFO     | [job] control thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:53,233 | INFO     | [data] copytool_in thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:53,350 | INFO     | [payload] failed_post thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:53,404 | INFO     | [data] control thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:53,603 | INFO     | [payload] control thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:53,786 | INFO     | [job] validate thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:53,810 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:53,890 | INFO     | [payload] validate_post thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:53,890 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:54,287 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:54,924 | INFO     | [data] copytool_out thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:03:55,816 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:04:02,692 | INFO     | job.realtimelogging is not enabled
[2025-10-12 08:04:22] 2025-10-12 06:04:03,698 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 08:04:22] 2025-10-12 06:04:14,280 | INFO     | [monitor] cgroup control has ended
[2025-10-12 08:04:22] 2025-10-12 06:04:15,917 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140693761812288)>', '<ExcThread(monitor, started 140693481686784)>']
[2025-10-12 08:04:22] 2025-10-12 06:04:20,942 | INFO     | all workflow threads have been joined
[2025-10-12 08:04:22] 2025-10-12 06:04:20,943 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 08:04:22] 2025-10-12 06:04:20,943 | INFO     | traces error code: 0
[2025-10-12 08:04:22] 2025-10-12 06:04:20,943 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 08:04:22] 2025-10-12 06:04:22,837 | INFO     | PID=1746737 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 08:04:22] 2025-10-12 06:04:22,837 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 08:04:22] 2025-10-12 06:04:22,837 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 08:04:22] 2025-10-12 06:04:22,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 08:04:22] 2025-10-12 06:04:22,837 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 08:04:22] 2025-10-12 06:04:22,837 | INFO     | [monitor] control thread has ended
[2025-10-12 08:04:22] 2025-10-12 06:04:22,884 [wrapper] ==== pilot stdout END ====
[2025-10-12 08:04:22] 2025-10-12 06:04:22,886 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 08:04:22] 2025-10-12 06:04:22,889 [wrapper] pilotpid: 1746737
[2025-10-12 08:04:22] 2025-10-12 06:04:22,892 [wrapper] Pilot exit status: 0
[2025-10-12 08:04:22] 2025-10-12 06:04:22,899 [wrapper] pandaids: 6838454890
[2025-10-12 08:04:22] 2025-10-12 06:04:22,914 [wrapper] cleanup supervisor_pilot 1765189 1746738
[2025-10-12 08:04:22] 2025-10-12 06:04:22,917 [wrapper] Test setup, not cleaning
[2025-10-12 08:04:22] 2025-10-12 06:04:22,919 [wrapper] apfmon messages muted
[2025-10-12 08:04:22] 2025-10-12 06:04:22,921 [wrapper] ==== wrapper stdout END ====
[2025-10-12 08:04:22] 2025-10-12 06:04:22,923 [wrapper] ==== wrapper stderr END ====
[2025-10-12 08:04:22]  *** Error codes and diagnostics ***
[2025-10-12 08:04:22]     "exeErrorCode": 0,
[2025-10-12 08:04:22]     "exeErrorDiag": "",
[2025-10-12 08:04:22]     "pilotErrorCode": 0,
[2025-10-12 08:04:22]     "pilotErrorDiag": "",
[2025-10-12 08:04:22]  *** Listing of results directory ***
[2025-10-12 08:04:22] total 403428
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc    557409 Oct 11 16:01 pilot3.tar.gz
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc      5112 Oct 11 16:53 queuedata.json
[2025-10-12 08:04:22] -rwx------ 1 boinc boinc     36292 Oct 11 16:55 runpilot2-wrapper.sh
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc       100 Oct 12 06:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 08:04:22] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 06:45 run_atlas
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc       105 Oct 12 06:45 job.xml
[2025-10-12 08:04:22] -rw-r--r-- 2 boinc boinc 218876119 Oct 12 06:45 EVNT.46676267._002406.pool.root.1
[2025-10-12 08:04:22] drwxrwx--x 2 boinc boinc      4096 Oct 12 06:45 shared
[2025-10-12 08:04:22] -rw-r--r-- 2 boinc boinc    569679 Oct 12 06:45 input.tar.gz
[2025-10-12 08:04:22] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:45 start_atlas.sh
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:45 boinc_setup_complete
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc      6448 Oct 12 06:45 init_data.xml
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:45 boinc_lockfile
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc      2550 Oct 12 06:45 pandaJob.out
[2025-10-12 08:04:22] -rw------- 1 boinc boinc    975512 Oct 12 06:45 agis_schedconf.cvmfs.json
[2025-10-12 08:04:22] -rw------- 1 boinc boinc   1560580 Oct 12 06:45 agis_ddmendpoints.agis.ALL.json
[2025-10-12 08:04:22] drwx------ 5 boinc boinc      4096 Oct 12 06:45 pilot3
[2025-10-12 08:04:22] -rw------- 1 boinc boinc 188473131 Oct 12 08:03 HITS.46676269._059576.pool.root.1
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc       529 Oct 12 08:03 boinc_task_state.xml
[2025-10-12 08:04:22] -rw------- 1 boinc boinc        95 Oct 12 08:03 pilot_heartbeat.json
[2025-10-12 08:04:22] -rw------- 1 boinc boinc      1017 Oct 12 08:03 memory_monitor_summary.json
[2025-10-12 08:04:22] -rw------- 1 boinc boinc    239394 Oct 12 08:03 log.46676269._059576.job.log.tgz.1
[2025-10-12 08:04:22] -rw------- 1 boinc boinc      7759 Oct 12 08:03 heartbeat.json
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc      8192 Oct 12 08:04 boinc_mmap_file
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc        27 Oct 12 08:04 wrapper_checkpoint.txt
[2025-10-12 08:04:22] -rw------- 1 boinc boinc       747 Oct 12 08:04 pilotlog.txt
[2025-10-12 08:04:22] -rw------- 1 boinc boinc    696333 Oct 12 08:04 log.46676269._059576.job.log.1
[2025-10-12 08:04:22] -rw------- 1 boinc boinc       357 Oct 12 08:04 output.list
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc       620 Oct 12 08:04 runtime_log
[2025-10-12 08:04:22] -rw------- 1 boinc boinc    952320 Oct 12 08:04 result.tar.gz
[2025-10-12 08:04:22] -rw------- 1 boinc boinc       662 Oct 12 08:04 u3rMDm4AqR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaigNDmVAuDIo.diag
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc      8797 Oct 12 08:04 runtime_log.err
[2025-10-12 08:04:22] -rw-r--r-- 1 boinc boinc     10514 Oct 12 08:04 stderr.txt
[2025-10-12 08:04:22] HITS file was successfully produced:
[2025-10-12 08:04:22] -rw------- 1 boinc boinc 188473131 Oct 12 08:03 shared/HITS.pool.root.1
[2025-10-12 08:04:22]  *** Contents of shared directory: ***
[2025-10-12 08:04:22] total 399320
[2025-10-12 08:04:22] -rw-r--r-- 2 boinc boinc 218876119 Oct 12 06:45 ATLAS.root_0
[2025-10-12 08:04:22] -rw-r--r-- 2 boinc boinc    569679 Oct 12 06:45 input.tar.gz
[2025-10-12 08:04:22] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:45 start_atlas.sh
[2025-10-12 08:04:22] -rw------- 1 boinc boinc 188473131 Oct 12 08:03 HITS.pool.root.1
[2025-10-12 08:04:22] -rw------- 1 boinc boinc    952320 Oct 12 08:04 result.tar.gz
08:04:24 (1743022): run_atlas exited; CPU time 13443.613653
08:04:24 (1743022): called boinc_finish(0)

</stderr_txt>
]]>

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