Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:41:58 (3505006): wrapper (7.7.26015): starting
12:41:58 (3505006): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 12:41:58] Arguments: --nthreads 4
[2025-10-12 12:41:58] Threads: 4
[2025-10-12 12:41:58] Checking for CVMFS
[2025-10-12 12:41:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:41:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:41:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:41:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:41:58] 2.13.2.0 1261730 1817 51196 151602 0 188 3686129 6144000 2724 130560 0 4952900 99.997 58944 95 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2025-10-12 12:41:58] CVMFS is ok
[2025-10-12 12:41:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:41:59] Checking for apptainer binary...
[2025-10-12 12:41:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:41:59] Running /usr/bin/apptainer --version
[2025-10-12 12:41:59] apptainer version 1.4.0
[2025-10-12 12:41:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:41:59] Zen
[2025-10-12 12:41:59] apptainer works
[2025-10-12 12:41:59] Set ATHENA_PROC_NUMBER=4
[2025-10-12 12:41:59] Set ATHENA_CORE_NUMBER=4
[2025-10-12 12:41:59] Starting ATLAS job with PandaID=6838603172
[2025-10-12 12:41:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:21:26]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:21:26]  protocol_id=None
[2025-10-12 14:21:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 14:21:26]  replicas=None
[2025-10-12 14:21:26]  scope=mc23_13p6TeV
[2025-10-12 14:21:26]  status=None
[2025-10-12 14:21:26]  status_code=0
[2025-10-12 14:21:26]  storage_token=
[2025-10-12 14:21:26]  surl=/home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6838603172/log.46676269._059929.job.log.tgz.1
[2025-10-12 14:21:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/ca/log.46676269._059929.job.log.tgz.1
[2025-10-12 14:21:26]  workdir=None
[2025-10-12 14:21:26] ]
[2025-10-12 14:21:26] 2025-10-12 03:20:24,555 | INFO     | transferring file log.46676269._059929.job.log.tgz.1 from /home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6838603172/log.46676269._059929.job.log.tgz.1 to /home/mich
[2025-10-12 14:21:26] 2025-10-12 03:20:24,556 | INFO     | executing command: /usr/bin/env mv /home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6838603172/log.46676269._059929.job.log.tgz.1 /home/michael/Boinc/BOINC/slots/0/lo
[2025-10-12 14:21:26] 2025-10-12 03:20:24,570 | INFO     | adding to output.list: log.46676269._059929.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/ca/log.46676269._059929.job.log.tg
[2025-10-12 14:21:26] 2025-10-12 03:20:24,571 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 14:21:26] 2025-10-12 03:20:24,571 | INFO     | summary of transferred files:
[2025-10-12 14:21:26] 2025-10-12 03:20:24,571 | INFO     |  -- lfn=log.46676269._059929.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 14:21:26] 2025-10-12 03:20:24,571 | INFO     | stage-out finished correctly
[2025-10-12 14:21:26] 2025-10-12 03:20:25,258 | INFO     | time since job start (5896s) is within the limit (172800.0s)
[2025-10-12 14:21:26] 2025-10-12 03:20:26,059 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 14:21:26] 2025-10-12 03:20:26,617 | INFO     | monitor loop #446: job 0:6838603172 is in state 'finished'
[2025-10-12 14:21:26] 2025-10-12 03:20:26,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:21:26] 2025-10-12 03:20:27,263 | INFO     | time since job start (5898s) is within the limit (172800.0s)
[2025-10-12 14:21:26] 2025-10-12 03:20:27,859 | INFO     | job 6838603172 has state=finished
[2025-10-12 14:21:26] 2025-10-12 03:20:27,859 | INFO     | preparing for final server update for job 6838603172 in state='finished'
[2025-10-12 14:21:26] 2025-10-12 03:20:27,859 | INFO     | this job has now completed (state=finished)
[2025-10-12 14:21:26] 2025-10-12 03:20:27,860 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 14:21:26] 2025-10-12 03:20:27,860 | INFO     | log transfer has been attempted: DONE
[2025-10-12 14:21:26] 2025-10-12 03:20:27,860 | INFO     | job 6838603172 has finished - writing final server update
[2025-10-12 14:21:26] 2025-10-12 03:20:27,860 | INFO     | total number of processed events: 400 (read)
[2025-10-12 14:21:26] 2025-10-12 03:20:27,861 | INFO     | executing command: lscpu
[2025-10-12 14:21:26] 2025-10-12 03:20:27,883 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 14:21:26] 2025-10-12 03:20:29,121 | INFO     | monitor loop #447: job 0:6838603172 is in state 'finished'
[2025-10-12 14:21:26] 2025-10-12 03:20:29,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:21:26] 2025-10-12 03:20:29,268 | INFO     | time since job start (5900s) is within the limit (172800.0s)
[2025-10-12 14:21:26] 2025-10-12 03:20:30,185 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 14:21:26] 2025-10-12 03:20:30,187 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4366.439666666665
[2025-10-12 14:21:26] 2025-10-12 03:20:30,189 | INFO     | using path: /home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6838603172/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:21:26] 2025-10-12 03:20:30,189 | INFO     | extracted standard info from prmon json
[2025-10-12 14:21:26] 2025-10-12 03:20:30,189 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:21:26] 2025-10-12 03:20:30,189 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:21:26] 2025-10-12 03:20:30,190 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:21:26] 2025-10-12 03:20:30,190 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | sum of square deviations: 226022842.5
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | sum of deviations: -4138897854.5000005
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | mean x: 1760236370.5
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | mean y: 2364812.322222222
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | -- intersect: 32235560610.996063
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | intersect: 32235560610.996063
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | chi2: 0.01881736562351499
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | -- intersect: 32235560610.996063
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | current memory leak: -18.31 B/s (using 90 data points, chi2=0.02)
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | could have reported an average CPU frequency of 4184 MHz (7 samples)
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | ..............................
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | . Timing measurements:
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | . get job = 0 s
[2025-10-12 14:21:26] 2025-10-12 03:20:30,191 | INFO     | . initial setup = 5 s
[2025-10-12 14:21:26] 2025-10-12 03:20:30,192 | INFO     | . payload setup = 3 s
[2025-10-12 14:21:26] 2025-10-12 03:20:30,192 | INFO     | . stage-in = 0 s
[2025-10-12 14:21:26] 2025-10-12 03:20:30,192 | INFO     | . payload execution = 5873 s
[2025-10-12 14:21:26] 2025-10-12 03:20:30,192 | INFO     | . stage-out = 0 s
[2025-10-12 14:21:26] 2025-10-12 03:20:30,192 | INFO     | . log creation = 0 s
[2025-10-12 14:21:26] 2025-10-12 03:20:30,192 | INFO     | ..............................
[2025-10-12 14:21:26] 2025-10-12 03:20:30,228 | INFO     | 
[2025-10-12 14:21:26] 2025-10-12 03:20:30,228 | INFO     | job summary report
[2025-10-12 14:21:26] 2025-10-12 03:20:30,228 | INFO     | --------------------------------------------------
[2025-10-12 14:21:26] 2025-10-12 03:20:30,228 | INFO     | PanDA job id: 6838603172
[2025-10-12 14:21:26] 2025-10-12 03:20:30,228 | INFO     | task id: 46676269
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | errors: (none)
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | pilot state: finished 
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | transexitcode: 0
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | exeerrorcode: 0
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | exeerrordiag: 
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | exitcode: 0
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | exitmsg: OK
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | cpuconsumptiontime: 22365 s
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | nevents: 400
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | neventsw: 0
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | pid: 3515395
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | pgrp: 3515395
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | corecount: 4
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | event service: False
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | sizes: {0: 2348697, 1: 2348896, 3: 2349158, 11: 2349186, 5880: 2376019, 5881: 2385222, 5882: 2385222, 5887: 2385416}
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | --------------------------------------------------
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | 
[2025-10-12 14:21:26] 2025-10-12 03:20:30,229 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/0
[2025-10-12 14:21:26] 2025-10-12 03:20:30,246 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,246 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,246 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,246 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,246 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | job 6838603172 has completed (purged errors)
[2025-10-12 14:21:26] 2025-10-12 03:20:30,247 | INFO     | overall cleanup function is called
[2025-10-12 14:21:26] 2025-10-12 03:20:31,254 | INFO     | --- collectZombieJob: --- 10, [3515395]
[2025-10-12 14:21:26] 2025-10-12 03:20:31,255 | INFO     | zombie collector waiting for pid 3515395
[2025-10-12 14:21:26] 2025-10-12 03:20:31,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:21:26] 2025-10-12 03:20:31,255 | INFO     | collected zombie processes
[2025-10-12 14:21:26] 2025-10-12 03:20:31,255 | INFO     | will attempt to kill all subprocesses of pid=3515395
[2025-10-12 14:21:26] 2025-10-12 03:20:31,412 | INFO     | process IDs to be killed: [3515395] (in reverse order)
[2025-10-12 14:21:26] 2025-10-12 03:20:31,455 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:21:26] 2025-10-12 03:20:31,456 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:21:26] 2025-10-12 03:20:31,460 | INFO     | did not find any defunct processes belonging to 3515395
[2025-10-12 14:21:26] 2025-10-12 03:20:31,463 | INFO     | did not find any defunct processes belonging to 3515395
[2025-10-12 14:21:26] 2025-10-12 03:20:31,463 | INFO     | ready for new job
[2025-10-12 14:21:26] 2025-10-12 03:20:31,463 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:21:26] 2025-10-12 03:20:31,464 | INFO     | ***************************************
[2025-10-12 14:21:26] 2025-10-12 03:20:31,465 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:21:26] 2025-10-12 03:20:31,465 | INFO     | ***************************************
[2025-10-12 14:21:26] 2025-10-12 03:20:31,465 | INFO     | 
[2025-10-12 14:21:26] 2025-10-12 03:20:31,466 | INFO     | architecture information:
[2025-10-12 14:21:26] 2025-10-12 03:20:31,466 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:21:26] 2025-10-12 03:20:31,480 | INFO     | cat /etc/os-release:
[2025-10-12 14:21:26] NAME="CentOS Linux"
[2025-10-12 14:21:26] VERSION="7 (Core)"
[2025-10-12 14:21:26] ID="centos"
[2025-10-12 14:21:26] ID_LIKE="rhel fedora"
[2025-10-12 14:21:26] VERSION_ID="7"
[2025-10-12 14:21:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:21:26] ANSI_COLOR="0;31"
[2025-10-12 14:21:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:21:26] HOME_URL="https://www.centos.org/"
[2025-10-12 14:21:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:21:26] 
[2025-10-12 14:21:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:21:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:21:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:21:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:21:26] 
[2025-10-12 14:21:26] 2025-10-12 03:20:31,480 | INFO     | ***************************************
[2025-10-12 14:21:26] 2025-10-12 03:20:31,983 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/0
[2025-10-12 14:21:26] 2025-10-12 03:20:31,996 | INFO     | sufficient remaining disk space (207202811904 B)
[2025-10-12 14:21:26] 2025-10-12 03:20:31,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:21:26] 2025-10-12 03:20:31,997 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:21:26] 2025-10-12 03:20:31,997 | INFO     | update_server=False
[2025-10-12 14:21:26] 2025-10-12 03:20:31,997 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:21:26] 2025-10-12 03:20:31,997 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:21:26] 2025-10-12 03:20:32,034 | INFO     | all data control threads have been joined
[2025-10-12 14:21:26] 2025-10-12 03:20:32,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:21:26] 2025-10-12 03:20:32,629 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:21:26] 2025-10-12 03:20:32,629 | INFO     | aborting loop
[2025-10-12 14:21:26] 2025-10-12 03:20:32,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:21:26] 2025-10-12 03:20:33,002 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:33,002 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:33,040 | INFO     | [data] control thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:33,189 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:33,312 | INFO     | all payload control threads have been joined
[2025-10-12 14:21:26] 2025-10-12 03:20:33,463 | INFO     | [job] validate thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:33,499 | INFO     | all job control threads have been joined
[2025-10-12 14:21:26] 2025-10-12 03:20:33,587 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:33,594 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:33,634 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:33,699 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:34,136 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:34,300 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:34,318 | INFO     | [payload] control thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:34,505 | INFO     | [job] control thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:34,634 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:36,104 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:20:42,501 | INFO     | job.realtimelogging is not enabled
[2025-10-12 14:21:26] 2025-10-12 03:20:43,506 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:21:26] 2025-10-12 03:21:02,416 | INFO     | PID=3508818 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:21:26] 2025-10-12 03:21:02,417 | INFO     | .. there are 4 such processes running
[2025-10-12 14:21:26] 2025-10-12 03:21:02,417 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:21:26] 2025-10-12 03:21:02,417 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:21:26] 2025-10-12 03:21:02,417 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:21:26] 2025-10-12 03:21:19,029 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:21:26] 2025-10-12 03:21:20,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126257039902528)>', '<ExcThread(monitor, started 126256335025920)>']
[2025-10-12 14:21:26] 2025-10-12 03:21:21,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:21:26] 2025-10-12 03:21:21,502 | INFO     | [monitor] control thread has ended
[2025-10-12 14:21:26] 2025-10-12 03:21:25,950 | INFO     | all workflow threads have been joined
[2025-10-12 14:21:26] 2025-10-12 03:21:25,950 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:21:26] 2025-10-12 03:21:25,950 | INFO     | traces error code: 0
[2025-10-12 14:21:26] 2025-10-12 03:21:25,950 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:21:26] 2025-10-12 03:21:26,031 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:21:26] 2025-10-12 03:21:26,034 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:21:26] 2025-10-12 03:21:26,036 [wrapper] pilotpid: 3508818
[2025-10-12 14:21:26] 2025-10-12 03:21:26,038 [wrapper] Pilot exit status: 0
[2025-10-12 14:21:26] 2025-10-12 03:21:26,045 [wrapper] pandaids: 6838603172
[2025-10-12 14:21:26] 2025-10-12 03:21:26,080 [wrapper] cleanup supervisor_pilot 3580918 3508819
[2025-10-12 14:21:26] 2025-10-12 03:21:26,082 [wrapper] Test setup, not cleaning
[2025-10-12 14:21:26] 2025-10-12 03:21:26,084 [wrapper] apfmon messages muted
[2025-10-12 14:21:26] 2025-10-12 03:21:26,086 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:21:26] 2025-10-12 03:21:26,088 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:21:26]  *** Error codes and diagnostics ***
[2025-10-12 14:21:26]     "exeErrorCode": 0,
[2025-10-12 14:21:26]     "exeErrorDiag": "",
[2025-10-12 14:21:26]     "pilotErrorCode": 0,
[2025-10-12 14:21:26]     "pilotErrorDiag": "",
[2025-10-12 14:21:26]  *** Listing of results directory ***
[2025-10-12 14:21:26] total 410964
[2025-10-12 14:21:26] -rw-r--r-- 1 michael michael    557409 Oct 12 02:05 pilot3.tar.gz
[2025-10-12 14:21:26] -rw-r--r-- 1 michael michael      5112 Oct 12 02:07 queuedata.json
[2025-10-12 14:21:26] -rwx------ 1 michael michael     36292 Oct 12 02:07 runpilot2-wrapper.sh
[2025-10-12 14:21:26] -rw-rw-r-- 1 michael michael       100 Oct 12 12:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:21:26] -rwxr-xr-x 1 michael michael      7986 Oct 12 12:41 run_atlas
[2025-10-12 14:21:26] -rw-rw-r-- 1 michael michael       105 Oct 12 12:41 job.xml
[2025-10-12 14:21:26] -rw-r--r-- 2 michael michael 221596399 Oct 12 12:41 EVNT.46676267._002391.pool.root.1
[2025-10-12 14:21:26] -rw-rw-r-- 1 michael michael      9816 Oct 12 12:41 init_data.xml
[2025-10-12 14:21:26] drwxrwx--x 2 michael michael      4096 Oct 12 12:41 shared
[2025-10-12 14:21:26] -rw-r--r-- 2 michael michael    569679 Oct 12 12:41 input.tar.gz
[2025-10-12 14:21:26] -rw-r--r-- 2 michael michael     15120 Oct 12 12:41 start_atlas.sh
[2025-10-12 14:21:26] -rw-rw-r-- 1 michael michael         0 Oct 12 12:41 boinc_lockfile
[2025-10-12 14:21:26] -rw-rw-r-- 1 michael michael      2550 Oct 12 12:41 pandaJob.out
[2025-10-12 14:21:26] -rw------- 1 michael michael    975496 Oct 12 12:42 agis_schedconf.cvmfs.json
[2025-10-12 14:21:26] -rw------- 1 michael michael   1560580 Oct 12 12:42 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:21:26] drwx------ 5 michael michael      4096 Oct 12 12:42 pilot3
[2025-10-12 14:21:26] -rw------- 1 michael michael 193005785 Oct 12 14:20 HITS.46676269._059929.pool.root.1
[2025-10-12 14:21:26] -rw-rw-r-- 1 michael michael       529 Oct 12 14:20 boinc_task_state.xml
[2025-10-12 14:21:26] -rw------- 1 michael michael      1022 Oct 12 14:20 memory_monitor_summary.json
[2025-10-12 14:21:26] -rw------- 1 michael michael    275085 Oct 12 14:20 log.46676269._059929.job.log.tgz.1
[2025-10-12 14:21:26] -rw------- 1 michael michael      7730 Oct 12 14:20 heartbeat.json
[2025-10-12 14:21:26] -rw------- 1 michael michael        95 Oct 12 14:21 pilot_heartbeat.json
[2025-10-12 14:21:26] -rw-rw-r-- 1 michael michael      8192 Oct 12 14:21 boinc_mmap_file
[2025-10-12 14:21:26] -rw-rw-r-- 1 michael michael        27 Oct 12 14:21 wrapper_checkpoint.txt
[2025-10-12 14:21:26] -rw------- 1 michael michael      4907 Oct 12 14:21 pilotlog.txt
[2025-10-12 14:21:26] -rw------- 1 michael michael    879802 Oct 12 14:21 log.46676269._059929.job.log.1
[2025-10-12 14:21:26] -rw------- 1 michael michael       357 Oct 12 14:21 output.list
[2025-10-12 14:21:26] -rw-rw-r-- 1 michael michael       620 Oct 12 14:21 runtime_log
[2025-10-12 14:21:26] -rw------- 1 michael michael   1177600 Oct 12 14:21 result.tar.gz
[2025-10-12 14:21:26] -rw------- 1 michael michael       640 Oct 12 14:21 SwGKDmyMqR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7lgNDm1SGZzm.diag
[2025-10-12 14:21:26] -rw-rw-r-- 1 michael michael      8797 Oct 12 14:21 runtime_log.err
[2025-10-12 14:21:26] -rw-rw-r-- 1 michael michael     21504 Oct 12 14:21 stderr.txt
[2025-10-12 14:21:26] HITS file was successfully produced:
[2025-10-12 14:21:26] -rw------- 1 michael michael 193005785 Oct 12 14:20 shared/HITS.pool.root.1
[2025-10-12 14:21:26]  *** Contents of shared directory: ***
[2025-10-12 14:21:26] total 406624
[2025-10-12 14:21:26] -rw-r--r-- 2 michael michael 221596399 Oct 12 12:41 ATLAS.root_0
[2025-10-12 14:21:26] -rw-r--r-- 2 michael michael    569679 Oct 12 12:41 input.tar.gz
[2025-10-12 14:21:26] -rw-r--r-- 2 michael michael     15120 Oct 12 12:41 start_atlas.sh
[2025-10-12 14:21:26] -rw------- 1 michael michael 193005785 Oct 12 14:20 HITS.pool.root.1
[2025-10-12 14:21:26] -rw------- 1 michael michael   1177600 Oct 12 14:21 result.tar.gz
14:21:27 (3505006): run_atlas exited; CPU time 22426.693124
14:21:27 (3505006): called boinc_finish(0)

</stderr_txt>
]]>

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