Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:21:15 (3377116): wrapper (7.7.26015): starting
16:21:15 (3377116): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 16:21:15] Arguments: --nthreads 12
[2025-10-11 16:21:15] Threads: 12
[2025-10-11 16:21:15] Checking for CVMFS
[2025-10-11 16:21:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 16:21:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 16:21:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 16:21:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 16:21:16] 2.13.2.0 135553 3226 109332 151595 3 196 31838126 32503809 8184 16776704 0 52930034 99.973 3204241 51505 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 16:21:16] CVMFS is ok
[2025-10-11 16:21:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:21:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 16:21:16] Further information can be found at the LHC@home message board.
[2025-10-11 16:21:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:21:16] Checking for apptainer binary...
[2025-10-11 16:21:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 16:21:16] Running /usr/bin/apptainer --version
[2025-10-11 16:21:16] apptainer version 1.4.3-1.el9
[2025-10-11 16:21:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:21:16] c8-7-2.aglt2.org
[2025-10-11 16:21:16] apptainer works
[2025-10-11 16:21:16] Set ATHENA_PROC_NUMBER=12
[2025-10-11 16:21:16] Set ATHENA_CORE_NUMBER=12
[2025-10-11 16:21:16] Starting ATLAS job with PandaID=6838199936
[2025-10-11 16:21:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 16:52:33]  *** The last 200 lines of the pilot log: ***
[2025-10-11 16:52:33]  replicas=None
[2025-10-11 16:52:33]  scope=mc23_13p6TeV
[2025-10-11 16:52:33]  status=None
[2025-10-11 16:52:33]  status_code=0
[2025-10-11 16:52:33]  storage_token=
[2025-10-11 16:52:33]  surl=/tmp/boinchome/slots/7/PanDA_Pilot-6838199936/log.46676269._053687.job.log.tgz.1
[2025-10-11 16:52:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/da/log.46676269._053687.job.log.tgz.1
[2025-10-11 16:52:33]  workdir=None
[2025-10-11 16:52:33] ]
[2025-10-11 16:52:33] 2025-10-11 20:51:39,024 | INFO     | transferring file log.46676269._053687.job.log.tgz.1 from /tmp/boinchome/slots/7/PanDA_Pilot-6838199936/log.46676269._053687.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 16:52:33] 2025-10-11 20:51:39,024 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/7/PanDA_Pilot-6838199936/log.46676269._053687.job.log.tgz.1 /tmp/boinchome/slots/7/log.46676269._053687.job
[2025-10-11 16:52:33] 2025-10-11 20:51:39,038 | INFO     | adding to output.list: log.46676269._053687.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/da/log.46676269._053687.job.log.tg
[2025-10-11 16:52:33] 2025-10-11 20:51:39,038 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 16:52:33] 2025-10-11 20:51:39,039 | INFO     | summary of transferred files:
[2025-10-11 16:52:33] 2025-10-11 20:51:39,039 | INFO     |  -- lfn=log.46676269._053687.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 16:52:33] 2025-10-11 20:51:39,039 | INFO     | stage-out finished correctly
[2025-10-11 16:52:33] 2025-10-11 20:51:39,527 | INFO     | monitor loop #137: job 0:6838199936 is in state 'finished'
[2025-10-11 16:52:33] 2025-10-11 20:51:39,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:52:33] 2025-10-11 20:51:40,697 | INFO     | time since job start (1815s) is within the limit (172800.0s)
[2025-10-11 16:52:33] 2025-10-11 20:51:42,030 | INFO     | monitor loop #138: job 0:6838199936 is in state 'finished'
[2025-10-11 16:52:33] 2025-10-11 20:51:42,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:52:33] 2025-10-11 20:51:42,331 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 16:52:33] 2025-10-11 20:51:42,384 | INFO     | job 6838199936 has state=finished
[2025-10-11 16:52:33] 2025-10-11 20:51:42,385 | INFO     | preparing for final server update for job 6838199936 in state='finished'
[2025-10-11 16:52:33] 2025-10-11 20:51:42,385 | INFO     | this job has now completed (state=finished)
[2025-10-11 16:52:33] 2025-10-11 20:51:42,385 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 16:52:33] 2025-10-11 20:51:42,385 | INFO     | log transfer has been attempted: DONE
[2025-10-11 16:52:33] 2025-10-11 20:51:42,385 | INFO     | job 6838199936 has finished - writing final server update
[2025-10-11 16:52:33] 2025-10-11 20:51:42,385 | INFO     | total number of processed events: 400 (read)
[2025-10-11 16:52:33] 2025-10-11 20:51:42,386 | INFO     | executing command: lscpu
[2025-10-11 16:52:33] 2025-10-11 20:51:42,452 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 16:52:33] 2025-10-11 20:51:42,703 | INFO     | time since job start (1817s) is within the limit (172800.0s)
[2025-10-11 16:52:33] 2025-10-11 20:51:44,533 | INFO     | monitor loop #139: job 0:6838199936 is in state 'finished'
[2025-10-11 16:52:33] 2025-10-11 20:51:44,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:52:33] 2025-10-11 20:51:44,709 | INFO     | time since job start (1819s) is within the limit (172800.0s)
[2025-10-11 16:52:33] 2025-10-11 20:51:46,023 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 16:52:33] 2025-10-11 20:51:46,039 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3585.300945312495
[2025-10-11 16:52:33] 2025-10-11 20:51:46,052 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6838199936/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 16:52:33] 2025-10-11 20:51:46,053 | INFO     | extracted standard info from prmon json
[2025-10-11 16:52:33] 2025-10-11 20:51:46,053 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 16:52:33] 2025-10-11 20:51:46,053 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 16:52:33] 2025-10-11 20:51:46,053 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 16:52:33] 2025-10-11 20:51:46,053 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | fitting pss+swap vs Time
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | sum of square deviations: 3765652.0
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | sum of deviations: 12550384.000000011
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | mean x: 1760215083.0
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | mean y: 2418326.9565217393
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | -- intersect: -5864128877.682115
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | intersect: -5864128877.682115
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | chi2: 0.0010431183761789092
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | -- intersect: -5864128877.682115
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | current memory leak: 3.33 B/s (using 23 data points, chi2=0.00)
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | could have reported an average CPU frequency of 3578 MHz (5 samples)
[2025-10-11 16:52:33] 2025-10-11 20:51:46,054 | INFO     | ..............................
[2025-10-11 16:52:33] 2025-10-11 20:51:46,055 | INFO     | . Timing measurements:
[2025-10-11 16:52:33] 2025-10-11 20:51:46,055 | INFO     | . get job = 0 s
[2025-10-11 16:52:33] 2025-10-11 20:51:46,055 | INFO     | . initial setup = 2 s
[2025-10-11 16:52:33] 2025-10-11 20:51:46,055 | INFO     | . payload setup = 3 s
[2025-10-11 16:52:33] 2025-10-11 20:51:46,055 | INFO     | . stage-in = 0 s
[2025-10-11 16:52:33] 2025-10-11 20:51:46,055 | INFO     | . payload execution = 1790 s
[2025-10-11 16:52:33] 2025-10-11 20:51:46,055 | INFO     | . stage-out = 0 s
[2025-10-11 16:52:33] 2025-10-11 20:51:46,055 | INFO     | . log creation = 0 s
[2025-10-11 16:52:33] 2025-10-11 20:51:46,055 | INFO     | ..............................
[2025-10-11 16:52:33] 2025-10-11 20:51:46,108 | INFO     | 
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | job summary report
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | --------------------------------------------------
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | PanDA job id: 6838199936
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | task id: 46676269
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | errors: (none)
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | pilot state: finished 
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | transexitcode: 0
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | exeerrorcode: 0
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | exeerrordiag: 
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | exitcode: 0
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | exitmsg: OK
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | cpuconsumptiontime: 19278 s
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | nevents: 400
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | neventsw: 0
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | pid: 3387855
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | pgrp: 3387855
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | corecount: 12
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | event service: False
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 1797: 2374067, 1799: 2383065, 1802: 2383121, 1806: 2383475}
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | --------------------------------------------------
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | 
[2025-10-11 16:52:33] 2025-10-11 20:51:46,109 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-10-11 16:52:33] 2025-10-11 20:51:46,126 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,126 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | job 6838199936 has completed (purged errors)
[2025-10-11 16:52:33] 2025-10-11 20:51:46,127 | INFO     | overall cleanup function is called
[2025-10-11 16:52:33] 2025-10-11 20:51:47,135 | INFO     | --- collectZombieJob: --- 10, [3387855]
[2025-10-11 16:52:33] 2025-10-11 20:51:47,135 | INFO     | zombie collector waiting for pid 3387855
[2025-10-11 16:52:33] 2025-10-11 20:51:47,135 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 16:52:33] 2025-10-11 20:51:47,135 | INFO     | collected zombie processes
[2025-10-11 16:52:33] 2025-10-11 20:51:47,135 | INFO     | will attempt to kill all subprocesses of pid=3387855
[2025-10-11 16:52:33] 2025-10-11 20:51:47,516 | INFO     | process IDs to be killed: [3387855] (in reverse order)
[2025-10-11 16:52:33] 2025-10-11 20:51:47,650 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 16:52:33] 2025-10-11 20:51:47,650 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 16:52:33] 2025-10-11 20:51:47,668 | INFO     | did not find any defunct processes belonging to 3387855
[2025-10-11 16:52:33] 2025-10-11 20:51:47,681 | INFO     | did not find any defunct processes belonging to 3387855
[2025-10-11 16:52:33] 2025-10-11 20:51:47,681 | INFO     | ready for new job
[2025-10-11 16:52:33] 2025-10-11 20:51:47,681 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 16:52:33] 2025-10-11 20:51:47,682 | INFO     | ***************************************
[2025-10-11 16:52:33] 2025-10-11 20:51:47,682 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 16:52:33] 2025-10-11 20:51:47,683 | INFO     | ***************************************
[2025-10-11 16:52:33] 2025-10-11 20:51:47,683 | INFO     | 
[2025-10-11 16:52:33] 2025-10-11 20:51:47,699 | INFO     | architecture information:
[2025-10-11 16:52:33] 2025-10-11 20:51:47,699 | INFO     | executing command: cat /etc/os-release
[2025-10-11 16:52:33] 2025-10-11 20:51:47,714 | INFO     | cat /etc/os-release:
[2025-10-11 16:52:33] NAME="CentOS Linux"
[2025-10-11 16:52:33] VERSION="7 (Core)"
[2025-10-11 16:52:33] ID="centos"
[2025-10-11 16:52:33] ID_LIKE="rhel fedora"
[2025-10-11 16:52:33] VERSION_ID="7"
[2025-10-11 16:52:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 16:52:33] ANSI_COLOR="0;31"
[2025-10-11 16:52:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 16:52:33] HOME_URL="https://www.centos.org/"
[2025-10-11 16:52:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 16:52:33] 
[2025-10-11 16:52:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 16:52:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 16:52:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 16:52:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 16:52:33] 
[2025-10-11 16:52:33] 2025-10-11 20:51:47,714 | INFO     | ***************************************
[2025-10-11 16:52:33] 2025-10-11 20:51:48,217 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-10-11 16:52:33] 2025-10-11 20:51:48,230 | INFO     | sufficient remaining disk space (91013251072 B)
[2025-10-11 16:52:33] 2025-10-11 20:51:48,230 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 16:52:33] 2025-10-11 20:51:48,231 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 16:52:33] 2025-10-11 20:51:48,231 | INFO     | update_server=False
[2025-10-11 16:52:33] 2025-10-11 20:51:48,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 16:52:33] 2025-10-11 20:51:48,231 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:52:33] 2025-10-11 20:51:48,231 | INFO     | aborting loop
[2025-10-11 16:52:33] 2025-10-11 20:51:48,390 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 16:52:33] 2025-10-11 20:51:48,526 | INFO     | all data control threads have been joined
[2025-10-11 16:52:33] 2025-10-11 20:51:48,826 | INFO     | all payload control threads have been joined
[2025-10-11 16:52:33] 2025-10-11 20:51:49,236 | INFO     | [job] retrieve thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:49,236 | INFO     | [job] job monitor thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:49,371 | INFO     | [payload] validate_post thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:49,422 | INFO     | [job] validate thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:49,532 | INFO     | [data] control thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:49,590 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:49,607 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 16:52:33] 2025-10-11 20:51:49,651 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:49,831 | INFO     | all job control threads have been joined
[2025-10-11 16:52:33] 2025-10-11 20:51:49,832 | INFO     | [payload] control thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:50,116 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:50,469 | INFO     | [payload] failed_post thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:50,569 | INFO     | [data] copytool_in thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:50,837 | INFO     | [job] control thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:51,119 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:52:33] 2025-10-11 20:51:51,612 | INFO     | [data] copytool_out thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:52,124 | INFO     | [job] queue monitor thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:52,396 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:51:58,685 | INFO     | job.realtimelogging is not enabled
[2025-10-11 16:52:33] 2025-10-11 20:51:59,689 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 16:52:33] 2025-10-11 20:52:18,231 | INFO     | PID=3381344 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 16:52:33] 2025-10-11 20:52:18,231 | INFO     | .. there are 11 such processes running
[2025-10-11 16:52:33] 2025-10-11 20:52:18,232 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 16:52:33] 2025-10-11 20:52:18,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 16:52:33] 2025-10-11 20:52:18,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 16:52:33] 2025-10-11 20:52:27,713 | INFO     | [monitor] cgroup control has ended
[2025-10-11 16:52:33] 2025-10-11 20:52:28,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139766135633728)>', '<ExcThread(monitor, started 139765768754944)>']
[2025-10-11 16:52:33] 2025-10-11 20:52:29,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 16:52:33] 2025-10-11 20:52:29,287 | INFO     | [monitor] control thread has ended
[2025-10-11 16:52:33] 2025-10-11 20:52:33,744 | INFO     | all workflow threads have been joined
[2025-10-11 16:52:33] 2025-10-11 20:52:33,745 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 16:52:33] 2025-10-11 20:52:33,745 | INFO     | traces error code: 0
[2025-10-11 16:52:33] 2025-10-11 20:52:33,745 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 16:52:33] 2025-10-11 20:52:33,830 [wrapper] ==== pilot stdout END ====
[2025-10-11 16:52:33] 2025-10-11 20:52:33,833 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 16:52:33] 2025-10-11 20:52:33,835 [wrapper] pilotpid: 3381344
[2025-10-11 16:52:33] 2025-10-11 20:52:33,837 [wrapper] Pilot exit status: 0
[2025-10-11 16:52:33] 2025-10-11 20:52:33,845 [wrapper] pandaids: 6838199936
[2025-10-11 16:52:33] 2025-10-11 20:52:33,940 [wrapper] cleanup supervisor_pilot 3572041 3381345
[2025-10-11 16:52:33] 2025-10-11 20:52:33,942 [wrapper] Test setup, not cleaning
[2025-10-11 16:52:33] 2025-10-11 20:52:33,945 [wrapper] apfmon messages muted
[2025-10-11 16:52:33] 2025-10-11 20:52:33,947 [wrapper] ==== wrapper stdout END ====
[2025-10-11 16:52:33] 2025-10-11 20:52:33,948 [wrapper] ==== wrapper stderr END ====
[2025-10-11 16:52:33]  *** Error codes and diagnostics ***
[2025-10-11 16:52:33]     "exeErrorCode": 0,
[2025-10-11 16:52:33]     "exeErrorDiag": "",
[2025-10-11 16:52:33]     "pilotErrorCode": 0,
[2025-10-11 16:52:33]     "pilotErrorDiag": "",
[2025-10-11 16:52:33]  *** Listing of results directory ***
[2025-10-11 16:52:34] total 417624
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 03:02 pilot3.tar.gz
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 03:40 queuedata.json
[2025-10-11 16:52:34] -rwx------. 1 boincer umatlas     36292 Oct 11 03:41 runpilot2-wrapper.sh
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas       100 Oct 11 16:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 16:52:34] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 16:21 run_atlas
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas       105 Oct 11 16:21 job.xml
[2025-10-11 16:52:34] -rw-r--r--. 2 boincer umatlas 222674116 Oct 11 16:21 EVNT.46676267._002154.pool.root.1
[2025-10-11 16:52:34] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 16:21 start_atlas.sh
[2025-10-11 16:52:34] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 16:21 shared
[2025-10-11 16:52:34] -rw-r--r--. 2 boincer umatlas    569685 Oct 11 16:21 input.tar.gz
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas         0 Oct 11 16:21 boinc_lockfile
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 16:21 pandaJob.out
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas    975528 Oct 11 16:21 agis_schedconf.cvmfs.json
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas   1560580 Oct 11 16:21 agis_ddmendpoints.agis.ALL.json
[2025-10-11 16:52:34] drwx------. 5 boincer umatlas      4096 Oct 11 16:21 pilot3
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas      7161 Oct 11 16:49 init_data.xml
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas 199752113 Oct 11 16:51 HITS.46676269._053687.pool.root.1
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas       529 Oct 11 16:51 boinc_task_state.xml
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas      1031 Oct 11 16:51 memory_monitor_summary.json
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas    361686 Oct 11 16:51 log.46676269._053687.job.log.tgz.1
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas      7774 Oct 11 16:51 heartbeat.json
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas        95 Oct 11 16:52 pilot_heartbeat.json
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 16:52 boinc_mmap_file
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas        27 Oct 11 16:52 wrapper_checkpoint.txt
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas      4896 Oct 11 16:52 pilotlog.txt
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas    299215 Oct 11 16:52 log.46676269._053687.job.log.1
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas       357 Oct 11 16:52 output.list
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas       620 Oct 11 16:52 runtime_log
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas    675840 Oct 11 16:52 result.tar.gz
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas      8695 Oct 11 16:52 runtime_log.err
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas       647 Oct 11 16:52 dSKKDm6OjR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmsSRMDmKNJ2Jn.diag
[2025-10-11 16:52:34] -rw-r--r--. 1 boincer umatlas     21830 Oct 11 16:52 stderr.txt
[2025-10-11 16:52:34] HITS file was successfully produced:
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas 199752113 Oct 11 16:51 shared/HITS.pool.root.1
[2025-10-11 16:52:34]  *** Contents of shared directory: ***
[2025-10-11 16:52:34] total 413768
[2025-10-11 16:52:34] -rw-r--r--. 2 boincer umatlas 222674116 Oct 11 16:21 ATLAS.root_0
[2025-10-11 16:52:34] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 16:21 start_atlas.sh
[2025-10-11 16:52:34] -rw-r--r--. 2 boincer umatlas    569685 Oct 11 16:21 input.tar.gz
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas 199752113 Oct 11 16:51 HITS.pool.root.1
[2025-10-11 16:52:34] -rw-------. 1 boincer umatlas    675840 Oct 11 16:52 result.tar.gz
16:52:35 (3377116): run_atlas exited; CPU time 19311.998895
16:52:35 (3377116): called boinc_finish(0)

</stderr_txt>
]]>

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