Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:16:03 (2415810): wrapper (7.7.26015): starting
07:16:03 (2415810): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 07:16:03] Arguments: --nthreads 2
[2025-10-12 07:16:03] Threads: 2
[2025-10-12 07:16:03] Checking for CVMFS
[2025-10-12 07:16:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:16:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:16:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:16:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:16:03] 2.9.2.0 1499568 3897 57972 151608 0 57 30184215 36864000 0 130560 0 2351811 99.988 129167 948 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 07:16:03] CVMFS is ok
[2025-10-12 07:16:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:16:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:16:03] Further information can be found at the LHC@home message board.
[2025-10-12 07:16:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:16:03] Checking for apptainer binary...
[2025-10-12 07:16:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:16:03] Running /usr/bin/apptainer --version
[2025-10-12 07:16:03] apptainer version 1.4.1-1.1
[2025-10-12 07:16:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:16:04] thA389
[2025-10-12 07:16:04] apptainer works
[2025-10-12 07:16:04] Set ATHENA_PROC_NUMBER=2
[2025-10-12 07:16:04] Set ATHENA_CORE_NUMBER=2
[2025-10-12 07:16:04] Starting ATLAS job with PandaID=6838454083
[2025-10-12 07:16:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:21:33]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:21:33] 2025-10-12 07:20:45,448 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:21:33] 2025-10-12 07:20:45,448 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:21:33] 2025-10-12 07:20:45,688 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 09:21:33] 2025-10-12 07:20:45,688 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 09:21:33] 2025-10-12 07:20:45,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:21:33] 2025-10-12 07:20:45,689 | INFO     | will abort loop
[2025-10-12 09:21:33] 2025-10-12 07:20:46,366 | INFO     | all payload control threads have been joined
[2025-10-12 09:21:33] 2025-10-12 07:20:46,451 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:46,453 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:46,516 | INFO     | all data control threads have been joined
[2025-10-12 09:21:33] 2025-10-12 07:20:46,693 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:46,874 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:46,970 | INFO     | all job control threads have been joined
[2025-10-12 09:21:33] 2025-10-12 07:20:47,166 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:47,371 | INFO     | [payload] control thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:47,449 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:47,454 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:47,522 | INFO     | [data] control thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:47,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:21:33] 2025-10-12 07:20:47,652 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:47,733 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:47,745 | INFO     | [job] validate thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:47,950 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:47,971 | INFO     | [job] control thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:51,656 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:20:55,648 | INFO     | job.realtimelogging is not enabled
[2025-10-12 09:21:33] 2025-10-12 07:20:56,654 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:21:33] 2025-10-12 07:21:16,225 | INFO     | PID=2419523 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:21:33] 2025-10-12 07:21:16,225 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:21:33] 2025-10-12 07:21:16,225 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:21:33] 2025-10-12 07:21:16,225 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:21:33] 2025-10-12 07:21:28,264 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:21:33] 2025-10-12 07:21:28,787 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140313346463552)>', '<ExcThread(monitor, started 140312848606976)>']
[2025-10-12 09:21:33] 2025-10-12 07:21:29,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:21:33] 2025-10-12 07:21:29,294 | INFO     | [monitor] control thread has ended
[2025-10-12 09:21:33] 2025-10-12 07:21:33,798 | INFO     | all workflow threads have been joined
[2025-10-12 09:21:33] 2025-10-12 07:21:33,798 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:21:33] 2025-10-12 07:21:33,799 | INFO     | traces error code: 0
[2025-10-12 09:21:33] 2025-10-12 07:21:33,799 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:21:33] 2025-10-12 07:21:33,839 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:21:33] 2025-10-12 07:21:33,842 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:21:33] 2025-10-12 07:21:33,844 [wrapper] pilotpid: 2419523
[2025-10-12 09:21:33] 2025-10-12 07:21:33,847 [wrapper] Pilot exit status: 0
[2025-10-12 09:21:33] 2025-10-12 07:21:33,853 [wrapper] pandaids: 6838454083
[2025-10-12 09:21:33] 2025-10-12 07:21:33,865 [wrapper] cleanup supervisor_pilot 2441087 2419524
[2025-10-12 09:21:33] 2025-10-12 07:21:33,867 [wrapper] Test setup, not cleaning
[2025-10-12 09:21:33] 2025-10-12 07:21:33,869 [wrapper] apfmon messages muted
[2025-10-12 09:21:33] 2025-10-12 07:21:33,871 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:21:33] 2025-10-12 07:21:33,873 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:21:33]  *** Error codes and diagnostics ***
[2025-10-12 09:21:33]     "exeErrorCode": 0,
[2025-10-12 09:21:33]     "exeErrorDiag": "",
[2025-10-12 09:21:33]     "pilotErrorCode": 0,
[2025-10-12 09:21:33]     "pilotErrorDiag": "",
[2025-10-12 09:21:33]  *** Listing of results directory ***
[2025-10-12 09:21:33] total 411668
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc    557409 Oct 11 16:01 pilot3.tar.gz
[2025-10-12 09:21:33] -rwx------ 1 boinc boinc     36292 Oct 11 16:44 runpilot2-wrapper.sh
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc      5112 Oct 11 16:44 queuedata.json
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc       100 Oct 12 07:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:21:33] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 07:16 run_atlas
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc       105 Oct 12 07:16 job.xml
[2025-10-12 09:21:33] -rw-r--r-- 2 boinc boinc 221375354 Oct 12 07:16 EVNT.46676267._002390.pool.root.1
[2025-10-12 09:21:33] -rw-r--r-- 2 boinc boinc    569679 Oct 12 07:16 input.tar.gz
[2025-10-12 09:21:33] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:16 start_atlas.sh
[2025-10-12 09:21:33] drwxrwx--x 2 boinc boinc      4096 Oct 12 07:16 shared
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:16 boinc_setup_complete
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc      6281 Oct 12 07:16 init_data.xml
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:16 boinc_lockfile
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc      2550 Oct 12 07:16 pandaJob.out
[2025-10-12 09:21:33] -rw------- 1 boinc boinc    975512 Oct 12 07:16 agis_schedconf.cvmfs.json
[2025-10-12 09:21:33] -rw------- 1 boinc boinc   1560580 Oct 12 07:16 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:21:33] drwx------ 5 boinc boinc      4096 Oct 12 07:16 pilot3
[2025-10-12 09:21:33] -rw------- 1 boinc boinc 193580843 Oct 12 09:20 HITS.46676269._059408.pool.root.1
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc       529 Oct 12 09:20 boinc_task_state.xml
[2025-10-12 09:21:33] -rw------- 1 boinc boinc      1017 Oct 12 09:20 memory_monitor_summary.json
[2025-10-12 09:21:33] -rw------- 1 boinc boinc    274587 Oct 12 09:20 log.46676269._059408.job.log.tgz.1
[2025-10-12 09:21:33] -rw------- 1 boinc boinc      7759 Oct 12 09:20 heartbeat.json
[2025-10-12 09:21:33] -rw------- 1 boinc boinc        95 Oct 12 09:21 pilot_heartbeat.json
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc      8192 Oct 12 09:21 boinc_mmap_file
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc        27 Oct 12 09:21 wrapper_checkpoint.txt
[2025-10-12 09:21:33] -rw------- 1 boinc boinc      5010 Oct 12 09:21 pilotlog.txt
[2025-10-12 09:21:33] -rw------- 1 boinc boinc   1076459 Oct 12 09:21 log.46676269._059408.job.log.1
[2025-10-12 09:21:33] -rw------- 1 boinc boinc       357 Oct 12 09:21 output.list
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc       620 Oct 12 09:21 runtime_log
[2025-10-12 09:21:33] -rw------- 1 boinc boinc   1372160 Oct 12 09:21 result.tar.gz
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc      8777 Oct 12 09:21 runtime_log.err
[2025-10-12 09:21:33] -rw------- 1 boinc boinc       659 Oct 12 09:21 bxCMDmr0pR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVhgNDmDaRz5n.diag
[2025-10-12 09:21:33] -rw-r--r-- 1 boinc boinc      7520 Oct 12 09:21 stderr.txt
[2025-10-12 09:21:33] HITS file was successfully produced:
[2025-10-12 09:21:33] -rw------- 1 boinc boinc 193580843 Oct 12 09:20 shared/HITS.pool.root.1
[2025-10-12 09:21:33]  *** Contents of shared directory: ***
[2025-10-12 09:21:33] total 407156
[2025-10-12 09:21:33] -rw-r--r-- 2 boinc boinc 221375354 Oct 12 07:16 ATLAS.root_0
[2025-10-12 09:21:33] -rw-r--r-- 2 boinc boinc    569679 Oct 12 07:16 input.tar.gz
[2025-10-12 09:21:33] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:16 start_atlas.sh
[2025-10-12 09:21:33] -rw------- 1 boinc boinc 193580843 Oct 12 09:20 HITS.pool.root.1
[2025-10-12 09:21:33] -rw------- 1 boinc boinc   1372160 Oct 12 09:21 result.tar.gz
09:21:35 (2415810): run_atlas exited; CPU time 14532.636338
09:21:35 (2415810): called boinc_finish(0)

</stderr_txt>
]]>

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