Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
05:29:25 (49090): wrapper (7.7.26015): starting
05:29:25 (49090): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 05:29:25] Arguments: --nthreads 12
[2025-10-12 05:29:25] Threads: 12
[2025-10-12 05:29:25] Checking for CVMFS
[2025-10-12 05:29:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:29:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:29:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:29:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:29:26] 2.12.7.0 2061225 1722 73016 151615 0 56 2274335 4194305 917 130560 0 4873794 99.997 63291 2326 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2025-10-12 05:29:26] CVMFS is ok
[2025-10-12 05:29:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:29:26] Checking for apptainer binary...
[2025-10-12 05:29:26] apptainer is not installed, using version from CVMFS
[2025-10-12 05:29:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:29:26] Trebeth
[2025-10-12 05:29:26] apptainer works
[2025-10-12 05:29:26] Set ATHENA_PROC_NUMBER=12
[2025-10-12 05:29:26] Set ATHENA_CORE_NUMBER=12
[2025-10-12 05:29:26] Starting ATLAS job with PandaID=6838366559
[2025-10-12 05:29:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:11:45]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:11:45] 2025-10-12 10:10:33,873 | INFO     | adding to output.list: log.46676269._057442.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/8f/log.46676269._057442.job.log.tg
[2025-10-12 06:11:45] 2025-10-12 10:10:33,873 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 06:11:45] 2025-10-12 10:10:33,873 | INFO     | summary of transferred files:
[2025-10-12 06:11:45] 2025-10-12 10:10:33,874 | INFO     |  -- lfn=log.46676269._057442.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 06:11:45] 2025-10-12 10:10:33,874 | INFO     | stage-out finished correctly
[2025-10-12 06:11:45] 2025-10-12 10:10:33,962 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 06:11:45] 2025-10-12 10:10:34,659 | INFO     | job 6838366559 has state=finished
[2025-10-12 06:11:45] 2025-10-12 10:10:34,659 | INFO     | preparing for final server update for job 6838366559 in state='finished'
[2025-10-12 06:11:45] 2025-10-12 10:10:34,660 | INFO     | this job has now completed (state=finished)
[2025-10-12 06:11:45] 2025-10-12 10:10:34,660 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 06:11:45] 2025-10-12 10:10:34,660 | INFO     | log transfer has been attempted: DONE
[2025-10-12 06:11:45] 2025-10-12 10:10:34,660 | INFO     | job 6838366559 has finished - writing final server update
[2025-10-12 06:11:45] 2025-10-12 10:10:34,661 | INFO     | total number of processed events: 400 (read)
[2025-10-12 06:11:45] 2025-10-12 10:10:34,662 | INFO     | executing command: lscpu
[2025-10-12 06:11:45] 2025-10-12 10:10:34,717 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 06:11:45] 2025-10-12 10:10:35,751 | INFO     | time since job start (2458s) is within the limit (172800.0s)
[2025-10-12 06:11:45] 2025-10-12 10:10:37,642 | WARNING  | process 60021 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 06:11:45] 2025-10-12 10:10:37,642 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6838366559/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:11:45] 2025-10-12 10:10:37,643 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6838366559/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:11:45] 2025-10-12 10:10:37,643 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 06:11:45] 2025-10-12 10:10:37,643 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 06:11:45] 2025-10-12 10:10:37,643 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4078062 B
[2025-10-12 06:11:45] 2025-10-12 10:10:37,644 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15311 B
[2025-10-12 06:11:45] 2025-10-12 10:10:37,644 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-10-12 06:11:45] 2025-10-12 10:10:37,755 | INFO     | time since job start (2460s) is within the limit (172800.0s)
[2025-10-12 06:11:45] 2025-10-12 10:10:39,760 | INFO     | time since job start (2462s) is within the limit (172800.0s)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,371 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 06:11:45] 2025-10-12 10:10:40,387 | INFO     | sufficient remaining disk space (403172229120 B)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,388 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,389 | INFO     | size of work directory /var/lib/boinc-client/slots/1/PanDA_Pilot-6838366559: 4360818 B (within 2537553920 B limit)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,389 | INFO     | pfn file=/var/lib/boinc-client/slots/1/PanDA_Pilot-6838366559/HITS.46676269._057442.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,389 | INFO     | total size of present files: 0 B (workdir size: 4360818 B)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,389 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/1/PanDA_Pilot-6838366559/HITS.46676269._057442.pool.root.1 since it does not exist
[2025-10-12 06:11:45] 2025-10-12 10:10:40,408 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 1646.078875
[2025-10-12 06:11:45] 2025-10-12 10:10:40,415 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6838366559/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,415 | INFO     | extracted standard info from prmon json
[2025-10-12 06:11:45] 2025-10-12 10:10:40,415 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 06:11:45] 2025-10-12 10:10:40,415 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 06:11:45] 2025-10-12 10:10:40,416 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 06:11:45] 2025-10-12 10:10:40,416 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 06:11:45] 2025-10-12 10:10:40,417 | INFO     | fitting pss+swap vs Time
[2025-10-12 06:11:45] 2025-10-12 10:10:40,417 | INFO     | sum of square deviations: 11133232.0
[2025-10-12 06:11:45] 2025-10-12 10:10:40,417 | INFO     | sum of deviations: 813204786.0
[2025-10-12 06:11:45] 2025-10-12 10:10:40,417 | INFO     | mean x: 1760262682.0
[2025-10-12 06:11:45] 2025-10-12 10:10:40,417 | INFO     | mean y: 2868655.0303030303
[2025-10-12 06:11:45] 2025-10-12 10:10:40,417 | INFO     | -- intersect: -128572017561.26305
[2025-10-12 06:11:45] 2025-10-12 10:10:40,417 | INFO     | intersect: -128572017561.26305
[2025-10-12 06:11:45] 2025-10-12 10:10:40,418 | INFO     | chi2: 0.029057706934293836
[2025-10-12 06:11:45] 2025-10-12 10:10:40,418 | INFO     | -- intersect: -128572017561.26305
[2025-10-12 06:11:45] 2025-10-12 10:10:40,418 | INFO     | current memory leak: 73.04 B/s (using 33 data points, chi2=0.03)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,418 | INFO     | could have reported an average CPU frequency of 1540 MHz (5 samples)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,418 | INFO     | ..............................
[2025-10-12 06:11:45] 2025-10-12 10:10:40,418 | INFO     | . Timing measurements:
[2025-10-12 06:11:45] 2025-10-12 10:10:40,419 | INFO     | . get job = 0 s
[2025-10-12 06:11:45] 2025-10-12 10:10:40,419 | INFO     | . initial setup = 2 s
[2025-10-12 06:11:45] 2025-10-12 10:10:40,419 | INFO     | . payload setup = 5 s
[2025-10-12 06:11:45] 2025-10-12 10:10:40,419 | INFO     | . stage-in = 0 s
[2025-10-12 06:11:45] 2025-10-12 10:10:40,419 | INFO     | . payload execution = 2432 s
[2025-10-12 06:11:45] 2025-10-12 10:10:40,419 | INFO     | . stage-out = 0 s
[2025-10-12 06:11:45] 2025-10-12 10:10:40,419 | INFO     | . log creation = 0 s
[2025-10-12 06:11:45] 2025-10-12 10:10:40,419 | INFO     | ..............................
[2025-10-12 06:11:45] 2025-10-12 10:10:40,464 | INFO     | 
[2025-10-12 06:11:45] 2025-10-12 10:10:40,465 | INFO     | job summary report
[2025-10-12 06:11:45] 2025-10-12 10:10:40,465 | INFO     | --------------------------------------------------
[2025-10-12 06:11:45] 2025-10-12 10:10:40,465 | INFO     | PanDA job id: 6838366559
[2025-10-12 06:11:45] 2025-10-12 10:10:40,465 | INFO     | task id: 46676269
[2025-10-12 06:11:45] 2025-10-12 10:10:40,466 | INFO     | errors: (none)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,466 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 06:11:45] 2025-10-12 10:10:40,466 | INFO     | pilot state: finished 
[2025-10-12 06:11:45] 2025-10-12 10:10:40,466 | INFO     | transexitcode: 0
[2025-10-12 06:11:45] 2025-10-12 10:10:40,466 | INFO     | exeerrorcode: 0
[2025-10-12 06:11:45] 2025-10-12 10:10:40,467 | INFO     | exeerrordiag: 
[2025-10-12 06:11:45] 2025-10-12 10:10:40,467 | INFO     | exitcode: 0
[2025-10-12 06:11:45] 2025-10-12 10:10:40,467 | INFO     | exitmsg: OK
[2025-10-12 06:11:45] 2025-10-12 10:10:40,467 | INFO     | cpuconsumptiontime: 24122 s
[2025-10-12 06:11:45] 2025-10-12 10:10:40,467 | INFO     | nevents: 400
[2025-10-12 06:11:45] 2025-10-12 10:10:40,468 | INFO     | neventsw: 0
[2025-10-12 06:11:45] 2025-10-12 10:10:40,468 | INFO     | pid: 60021
[2025-10-12 06:11:45] 2025-10-12 10:10:40,468 | INFO     | pgrp: 60021
[2025-10-12 06:11:45] 2025-10-12 10:10:40,468 | INFO     | corecount: 12
[2025-10-12 06:11:45] 2025-10-12 10:10:40,469 | INFO     | event service: False
[2025-10-12 06:11:45] 2025-10-12 10:10:40,469 | INFO     | sizes: {0: 2348864, 4: 2349126, 11: 2349154, 2442: 2374308, 2443: 2383376, 2449: 2383574}
[2025-10-12 06:11:45] 2025-10-12 10:10:40,469 | INFO     | --------------------------------------------------
[2025-10-12 06:11:45] 2025-10-12 10:10:40,469 | INFO     | 
[2025-10-12 06:11:45] 2025-10-12 10:10:40,469 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-10-12 06:11:45] 2025-10-12 10:10:40,488 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,489 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,489 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,489 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,489 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,489 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,490 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,490 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,490 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,490 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,490 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,490 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,491 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,491 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,491 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,491 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,491 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,491 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,492 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,492 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 06:11:45] 2025-10-12 10:10:40,492 | INFO     | job 6838366559 has completed (purged errors)
[2025-10-12 06:11:45] 2025-10-12 10:10:40,492 | INFO     | overall cleanup function is called
[2025-10-12 06:11:45] 2025-10-12 10:10:40,591 | INFO     | number of running child processes to parent process 60021: 1
[2025-10-12 06:11:45] 2025-10-12 10:10:40,591 | INFO     | maximum number of monitored processes: 6
[2025-10-12 06:11:45] 2025-10-12 10:10:40,591 | INFO     | aborting job monitoring since job object (job id=6838366559) has expired
[2025-10-12 06:11:45] 2025-10-12 10:10:41,500 | INFO     | --- collectZombieJob: --- 10, [60021]
[2025-10-12 06:11:45] 2025-10-12 10:10:41,501 | INFO     | zombie collector waiting for pid 60021
[2025-10-12 06:11:45] 2025-10-12 10:10:41,501 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:11:45] 2025-10-12 10:10:41,501 | INFO     | collected zombie processes
[2025-10-12 06:11:45] 2025-10-12 10:10:41,501 | INFO     | will attempt to kill all subprocesses of pid=60021
[2025-10-12 06:11:45] 2025-10-12 10:10:41,656 | INFO     | process IDs to be killed: [60021] (in reverse order)
[2025-10-12 06:11:45] 2025-10-12 10:10:41,709 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:11:45] 2025-10-12 10:10:41,709 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:11:45] 2025-10-12 10:10:41,716 | INFO     | did not find any defunct processes belonging to 60021
[2025-10-12 06:11:45] 2025-10-12 10:10:41,720 | INFO     | did not find any defunct processes belonging to 60021
[2025-10-12 06:11:45] 2025-10-12 10:10:41,720 | INFO     | ready for new job
[2025-10-12 06:11:45] 2025-10-12 10:10:41,720 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:11:45] 2025-10-12 10:10:41,721 | INFO     | ***************************************
[2025-10-12 06:11:45] 2025-10-12 10:10:41,721 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:11:45] 2025-10-12 10:10:41,721 | INFO     | ***************************************
[2025-10-12 06:11:45] 2025-10-12 10:10:41,721 | INFO     | 
[2025-10-12 06:11:45] 2025-10-12 10:10:41,742 | INFO     | architecture information:
[2025-10-12 06:11:45] 2025-10-12 10:10:41,743 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:11:45] 2025-10-12 10:10:41,753 | INFO     | cat /etc/os-release:
[2025-10-12 06:11:45] NAME="CentOS Linux"
[2025-10-12 06:11:45] VERSION="7 (Core)"
[2025-10-12 06:11:45] ID="centos"
[2025-10-12 06:11:45] ID_LIKE="rhel fedora"
[2025-10-12 06:11:45] VERSION_ID="7"
[2025-10-12 06:11:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:11:45] ANSI_COLOR="0;31"
[2025-10-12 06:11:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:11:45] HOME_URL="https://www.centos.org/"
[2025-10-12 06:11:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:11:45] 
[2025-10-12 06:11:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:11:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:11:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:11:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:11:45] 
[2025-10-12 06:11:45] 2025-10-12 10:10:41,753 | INFO     | ***************************************
[2025-10-12 06:11:45] 2025-10-12 10:10:42,255 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-10-12 06:11:45] 2025-10-12 10:10:42,268 | INFO     | sufficient remaining disk space (403175374848 B)
[2025-10-12 06:11:45] 2025-10-12 10:10:42,268 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:11:45] 2025-10-12 10:10:42,269 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:11:45] 2025-10-12 10:10:42,269 | INFO     | update_server=False
[2025-10-12 06:11:45] 2025-10-12 10:10:42,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:11:45] 2025-10-12 10:10:42,269 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:11:45] 2025-10-12 10:10:42,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:11:45] 2025-10-12 10:10:42,270 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:11:45] 2025-10-12 10:10:42,270 | INFO     | aborting loop
[2025-10-12 06:11:45] 2025-10-12 10:10:42,865 | INFO     | all data control threads have been joined
[2025-10-12 06:11:45] 2025-10-12 10:10:43,072 | INFO     | all payload control threads have been joined
[2025-10-12 06:11:45] 2025-10-12 10:10:43,194 | INFO     | all job control threads have been joined
[2025-10-12 06:11:45] 2025-10-12 10:10:43,274 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:43,275 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:43,276 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:43,366 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:43,660 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:43,870 | INFO     | [data] control thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:43,938 | INFO     | [job] validate thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:44,058 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:44,074 | INFO     | [payload] control thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:44,145 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:44,199 | INFO     | [job] control thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:44,276 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:44,506 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:44,517 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:11:45] 2025-10-12 10:10:44,648 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:48,522 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:10:53,084 | INFO     | job.realtimelogging is not enabled
[2025-10-12 06:11:45] 2025-10-12 10:10:54,086 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:11:45] 2025-10-12 10:11:13,009 | INFO     | PID=53096 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 06:11:45] 2025-10-12 10:11:13,009 | INFO     | .. there are 2 such processes running
[2025-10-12 06:11:45] 2025-10-12 10:11:13,010 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:11:45] 2025-10-12 10:11:13,010 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:11:45] 2025-10-12 10:11:13,010 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:11:45] 2025-10-12 10:11:40,139 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:11:45] 2025-10-12 10:11:40,650 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140015950931776)>', '<ExcThread(monitor, started 140014927214336)>']
[2025-10-12 06:11:45] 2025-10-12 10:11:41,142 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:11:45] 2025-10-12 10:11:41,143 | INFO     | [monitor] control thread has ended
[2025-10-12 06:11:45] 2025-10-12 10:11:45,674 | INFO     | all workflow threads have been joined
[2025-10-12 06:11:45] 2025-10-12 10:11:45,675 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:11:45] 2025-10-12 10:11:45,675 | INFO     | traces error code: 0
[2025-10-12 06:11:45] 2025-10-12 10:11:45,675 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:11:45] 2025-10-12 10:11:45,746 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:11:45] 2025-10-12 10:11:45,750 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:11:45] 2025-10-12 10:11:45,753 [wrapper] pilotpid: 53096
[2025-10-12 06:11:45] 2025-10-12 10:11:45,756 [wrapper] Pilot exit status: 0
[2025-10-12 06:11:45] 2025-10-12 10:11:45,766 [wrapper] pandaids: 6838366559
[2025-10-12 06:11:45] 2025-10-12 10:11:45,802 [wrapper] cleanup supervisor_pilot   92653 53097
[2025-10-12 06:11:45] 2025-10-12 10:11:45,805 [wrapper] Test setup, not cleaning
[2025-10-12 06:11:45] 2025-10-12 10:11:45,808 [wrapper] apfmon messages muted
[2025-10-12 06:11:45] 2025-10-12 10:11:45,811 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:11:45] 2025-10-12 10:11:45,813 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:11:45]  *** Error codes and diagnostics ***
[2025-10-12 06:11:45]     "exeErrorCode": 0,
[2025-10-12 06:11:45]     "exeErrorDiag": "",
[2025-10-12 06:11:45]     "pilotErrorCode": 0,
[2025-10-12 06:11:45]     "pilotErrorDiag": "",
[2025-10-12 06:11:45]  *** Listing of results directory ***
[2025-10-12 06:11:45] total 408368
[2025-10-12 06:11:45] -rwx------ 1 boinc boinc     36292 Oct 11 08:28 runpilot2-wrapper.sh
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc      5112 Oct 11 08:28 queuedata.json
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc    557409 Oct 11 08:28 pilot3.tar.gz
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc       100 Oct 12 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:11:45] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 05:29 run_atlas
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc       105 Oct 12 05:29 job.xml
[2025-10-12 06:11:45] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:29 start_atlas.sh
[2025-10-12 06:11:45] drwxrwx--x 2 boinc boinc      4096 Oct 12 05:29 shared
[2025-10-12 06:11:45] -rw-r--r-- 2 boinc boinc    569671 Oct 12 05:29 input.tar.gz
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc      7601 Oct 12 05:29 init_data.xml
[2025-10-12 06:11:45] -rw-r--r-- 2 boinc boinc 219886090 Oct 12 05:29 EVNT.46676267._002306.pool.root.1
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc         0 Oct 12 05:29 boinc_lockfile
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc      2550 Oct 12 05:29 pandaJob.out
[2025-10-12 06:11:45] -rw------- 1 boinc boinc    975536 Oct 12 05:29 agis_schedconf.cvmfs.json
[2025-10-12 06:11:45] -rw------- 1 boinc boinc   1560580 Oct 12 05:29 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:11:45] drwx------ 5 boinc boinc      4096 Oct 12 05:29 pilot3
[2025-10-12 06:11:45] -rw------- 1 boinc boinc 192876683 Oct 12 06:10 HITS.46676269._057442.pool.root.1
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc       529 Oct 12 06:10 boinc_task_state.xml
[2025-10-12 06:11:45] -rw------- 1 boinc boinc      1026 Oct 12 06:10 memory_monitor_summary.json
[2025-10-12 06:11:45] -rw------- 1 boinc boinc    350364 Oct 12 06:10 log.46676269._057442.job.log.tgz.1
[2025-10-12 06:11:45] -rw------- 1 boinc boinc      7778 Oct 12 06:10 heartbeat.json
[2025-10-12 06:11:45] -rw------- 1 boinc boinc        95 Oct 12 06:11 pilot_heartbeat.json
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc        27 Oct 12 06:11 wrapper_checkpoint.txt
[2025-10-12 06:11:45] -rw------- 1 boinc boinc      4901 Oct 12 06:11 pilotlog.txt
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc      8192 Oct 12 06:11 boinc_mmap_file
[2025-10-12 06:11:45] -rw------- 1 boinc boinc    394572 Oct 12 06:11 log.46676269._057442.job.log.1
[2025-10-12 06:11:45] -rw------- 1 boinc boinc       357 Oct 12 06:11 output.list
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc       620 Oct 12 06:11 runtime_log
[2025-10-12 06:11:45] -rw------- 1 boinc boinc    768000 Oct 12 06:11 result.tar.gz
[2025-10-12 06:11:45] -rw------- 1 boinc boinc       648 Oct 12 06:11 SuFNDm4snR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmnqRMDmY1SlFn.diag
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc      8772 Oct 12 06:11 runtime_log.err
[2025-10-12 06:11:45] -rw-r--r-- 1 boinc boinc     22228 Oct 12 06:11 stderr.txt
[2025-10-12 06:11:45] HITS file was successfully produced:
[2025-10-12 06:11:45] -rw------- 1 boinc boinc 192876683 Oct 12 06:10 shared/HITS.pool.root.1
[2025-10-12 06:11:45]  *** Contents of shared directory: ***
[2025-10-12 06:11:45] total 404432
[2025-10-12 06:11:45] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:29 start_atlas.sh
[2025-10-12 06:11:45] -rw-r--r-- 2 boinc boinc    569671 Oct 12 05:29 input.tar.gz
[2025-10-12 06:11:45] -rw-r--r-- 2 boinc boinc 219886090 Oct 12 05:29 ATLAS.root_0
[2025-10-12 06:11:45] -rw------- 1 boinc boinc 192876683 Oct 12 06:10 HITS.pool.root.1
[2025-10-12 06:11:45] -rw------- 1 boinc boinc    768000 Oct 12 06:11 result.tar.gz
06:11:47 (49090): run_atlas exited; CPU time 24152.355618
06:11:47 (49090): called boinc_finish(0)

</stderr_txt>
]]>

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