Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:27:03 (2874237): wrapper (7.7.26015): starting
06:27:03 (2874237): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 06:27:03] Arguments: --nthreads 3
[2025-10-12 06:27:03] Threads: 3
[2025-10-12 06:27:03] Checking for CVMFS
[2025-10-12 06:27:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:27:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:27:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:27:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:27:03] 2.9.2.0 1694695 3868 82792 151608 1 56 29852595 36864001 0 130560 0 3090777 99.991 132149 1096 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 06:27:03] CVMFS is ok
[2025-10-12 06:27:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 06:27:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 06:27:03] Further information can be found at the LHC@home message board.
[2025-10-12 06:27:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:27:03] Checking for apptainer binary...
[2025-10-12 06:27:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 06:27:03] Running /usr/bin/apptainer --version
[2025-10-12 06:27:03] apptainer version 1.4.1-1.1
[2025-10-12 06:27:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:27:03] thA312a
[2025-10-12 06:27:03] apptainer works
[2025-10-12 06:27:03] Set ATHENA_PROC_NUMBER=3
[2025-10-12 06:27:03] Set ATHENA_CORE_NUMBER=3
[2025-10-12 06:27:03] Starting ATLAS job with PandaID=6838634693
[2025-10-12 06:27:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:50:23]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:50:23] 2025-10-12 05:49:51,644 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:50:23] 2025-10-12 05:49:51,644 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:50:23] 2025-10-12 05:49:51,644 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:50:23] 2025-10-12 05:49:51,644 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:50:23] 2025-10-12 05:49:51,644 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:50:23] 2025-10-12 05:49:51,644 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:50:23] 2025-10-12 05:49:51,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:50:23] 2025-10-12 05:49:51,644 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:50:23] 2025-10-12 05:49:51,644 | INFO     | job 6838634693 has completed (purged errors)
[2025-10-12 07:50:23] 2025-10-12 05:49:51,644 | INFO     | overall cleanup function is called
[2025-10-12 07:50:23] 2025-10-12 05:49:52,651 | INFO     | --- collectZombieJob: --- 10, [2884397]
[2025-10-12 07:50:23] 2025-10-12 05:49:52,651 | INFO     | zombie collector waiting for pid 2884397
[2025-10-12 07:50:23] 2025-10-12 05:49:52,651 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:50:23] 2025-10-12 05:49:52,651 | INFO     | collected zombie processes
[2025-10-12 07:50:23] 2025-10-12 05:49:52,651 | INFO     | will attempt to kill all subprocesses of pid=2884397
[2025-10-12 07:50:23] 2025-10-12 05:49:52,694 | INFO     | process IDs to be killed: [2884397] (in reverse order)
[2025-10-12 07:50:23] 2025-10-12 05:49:52,719 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:50:23] 2025-10-12 05:49:52,720 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:50:23] 2025-10-12 05:49:52,721 | INFO     | did not find any defunct processes belonging to 2884397
[2025-10-12 07:50:23] 2025-10-12 05:49:52,722 | INFO     | did not find any defunct processes belonging to 2884397
[2025-10-12 07:50:23] 2025-10-12 05:49:52,722 | INFO     | ready for new job
[2025-10-12 07:50:23] 2025-10-12 05:49:52,722 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:50:23] 2025-10-12 05:49:52,723 | INFO     | ***************************************
[2025-10-12 07:50:23] 2025-10-12 05:49:52,723 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:50:23] 2025-10-12 05:49:52,723 | INFO     | ***************************************
[2025-10-12 07:50:23] 2025-10-12 05:49:52,723 | INFO     | 
[2025-10-12 07:50:23] 2025-10-12 05:49:52,723 | INFO     | architecture information:
[2025-10-12 07:50:23] 2025-10-12 05:49:52,723 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:50:23] 2025-10-12 05:49:52,732 | INFO     | cat /etc/os-release:
[2025-10-12 07:50:23] NAME="CentOS Linux"
[2025-10-12 07:50:23] VERSION="7 (Core)"
[2025-10-12 07:50:23] ID="centos"
[2025-10-12 07:50:23] ID_LIKE="rhel fedora"
[2025-10-12 07:50:23] VERSION_ID="7"
[2025-10-12 07:50:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:50:23] ANSI_COLOR="0;31"
[2025-10-12 07:50:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:50:23] HOME_URL="https://www.centos.org/"
[2025-10-12 07:50:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:50:23] 
[2025-10-12 07:50:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:50:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:50:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:50:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:50:23] 
[2025-10-12 07:50:23] 2025-10-12 05:49:52,733 | INFO     | ***************************************
[2025-10-12 07:50:23] 2025-10-12 05:49:53,236 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 07:50:23] 2025-10-12 05:49:53,247 | INFO     | sufficient remaining disk space (274712231936 B)
[2025-10-12 07:50:23] 2025-10-12 05:49:53,247 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:50:23] 2025-10-12 05:49:53,248 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:50:23] 2025-10-12 05:49:53,248 | INFO     | update_server=False
[2025-10-12 07:50:23] 2025-10-12 05:49:53,248 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:50:23] 2025-10-12 05:49:53,248 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:50:23] 2025-10-12 05:49:53,260 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:50:23] 2025-10-12 05:49:53,261 | INFO     | aborting loop
[2025-10-12 07:50:23] 2025-10-12 05:49:53,962 | INFO     | all data control threads have been joined
[2025-10-12 07:50:23] 2025-10-12 05:49:54,128 | INFO     | all payload control threads have been joined
[2025-10-12 07:50:23] 2025-10-12 05:49:54,252 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:54,253 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:54,258 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:54,266 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:54,394 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:54,627 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:50:23] 2025-10-12 05:49:54,875 | INFO     | all job control threads have been joined
[2025-10-12 07:50:23] 2025-10-12 05:49:54,967 | INFO     | [data] control thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:55,134 | INFO     | [payload] control thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:55,265 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:55,343 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:55,366 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:55,668 | INFO     | [job] validate thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:55,696 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:55,697 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:50:23] 2025-10-12 05:49:55,881 | INFO     | [job] control thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:56,633 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:49:59,704 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:50:04,133 | INFO     | job.realtimelogging is not enabled
[2025-10-12 07:50:23] 2025-10-12 05:50:05,139 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:50:23] 2025-10-12 05:50:15,382 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:50:23] 2025-10-12 05:50:16,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195386935104)>', '<ExcThread(monitor, started 140194309207808)>']
[2025-10-12 07:50:23] 2025-10-12 05:50:21,265 | INFO     | all workflow threads have been joined
[2025-10-12 07:50:23] 2025-10-12 05:50:21,266 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:50:23] 2025-10-12 05:50:21,266 | INFO     | traces error code: 0
[2025-10-12 07:50:23] 2025-10-12 05:50:21,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:50:23] 2025-10-12 05:50:23,752 | INFO     | PID=2877956 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 07:50:23] 2025-10-12 05:50:23,752 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:50:23] 2025-10-12 05:50:23,752 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:50:23] 2025-10-12 05:50:23,752 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:50:23] 2025-10-12 05:50:23,752 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:50:23] 2025-10-12 05:50:23,753 | INFO     | [monitor] control thread has ended
[2025-10-12 07:50:23] 2025-10-12 05:50:23,800 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:50:23] 2025-10-12 05:50:23,803 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:50:23] 2025-10-12 05:50:23,805 [wrapper] pilotpid: 2877956
[2025-10-12 07:50:23] 2025-10-12 05:50:23,808 [wrapper] Pilot exit status: 0
[2025-10-12 07:50:23] 2025-10-12 05:50:23,815 [wrapper] pandaids: 6838634693
[2025-10-12 07:50:23] 2025-10-12 05:50:23,833 [wrapper] cleanup supervisor_pilot 2896693 2877957
[2025-10-12 07:50:23] 2025-10-12 05:50:23,835 [wrapper] Test setup, not cleaning
[2025-10-12 07:50:23] 2025-10-12 05:50:23,838 [wrapper] apfmon messages muted
[2025-10-12 07:50:23] 2025-10-12 05:50:23,840 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:50:23] 2025-10-12 05:50:23,843 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:50:23]  *** Error codes and diagnostics ***
[2025-10-12 07:50:23]     "exeErrorCode": 0,
[2025-10-12 07:50:23]     "exeErrorDiag": "",
[2025-10-12 07:50:23]     "pilotErrorCode": 0,
[2025-10-12 07:50:23]     "pilotErrorDiag": "",
[2025-10-12 07:50:23]  *** Listing of results directory ***
[2025-10-12 07:50:23] total 414344
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc      5112 Oct 11 19:33 queuedata.json
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc    557409 Oct 11 19:33 pilot3.tar.gz
[2025-10-12 07:50:23] -rwx------ 1 boinc boinc     36292 Oct 11 19:34 runpilot2-wrapper.sh
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc       100 Oct 12 06:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:50:23] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 06:27 run_atlas
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc       105 Oct 12 06:27 job.xml
[2025-10-12 07:50:23] -rw-r--r-- 2 boinc boinc 221961431 Oct 12 06:27 EVNT.46676267._002490.pool.root.1
[2025-10-12 07:50:23] -rw-r--r-- 2 boinc boinc    569680 Oct 12 06:27 input.tar.gz
[2025-10-12 07:50:23] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:27 start_atlas.sh
[2025-10-12 07:50:23] drwxrwx--x 2 boinc boinc      4096 Oct 12 06:27 shared
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:27 boinc_setup_complete
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc      6447 Oct 12 06:27 init_data.xml
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:27 boinc_lockfile
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc      2550 Oct 12 06:27 pandaJob.out
[2025-10-12 07:50:23] -rw------- 1 boinc boinc    975512 Oct 12 06:27 agis_schedconf.cvmfs.json
[2025-10-12 07:50:23] -rw------- 1 boinc boinc   1560580 Oct 12 06:27 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:50:23] drwx------ 5 boinc boinc      4096 Oct 12 06:27 pilot3
[2025-10-12 07:50:23] -rw------- 1 boinc boinc 196471681 Oct 12 07:49 HITS.46676269._061988.pool.root.1
[2025-10-12 07:50:23] -rw------- 1 boinc boinc        95 Oct 12 07:49 pilot_heartbeat.json
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc       529 Oct 12 07:49 boinc_task_state.xml
[2025-10-12 07:50:23] -rw------- 1 boinc boinc      1016 Oct 12 07:49 memory_monitor_summary.json
[2025-10-12 07:50:23] -rw------- 1 boinc boinc    259392 Oct 12 07:49 log.46676269._061988.job.log.tgz.1
[2025-10-12 07:50:23] -rw------- 1 boinc boinc      7755 Oct 12 07:49 heartbeat.json
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc      8192 Oct 12 07:50 boinc_mmap_file
[2025-10-12 07:50:23] -rw------- 1 boinc boinc       747 Oct 12 07:50 pilotlog.txt
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc        27 Oct 12 07:50 wrapper_checkpoint.txt
[2025-10-12 07:50:23] -rw------- 1 boinc boinc    728227 Oct 12 07:50 log.46676269._061988.job.log.1
[2025-10-12 07:50:23] -rw------- 1 boinc boinc       357 Oct 12 07:50 output.list
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc       620 Oct 12 07:50 runtime_log
[2025-10-12 07:50:23] -rw------- 1 boinc boinc   1003520 Oct 12 07:50 result.tar.gz
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc      8782 Oct 12 07:50 runtime_log.err
[2025-10-12 07:50:23] -rw------- 1 boinc boinc       659 Oct 12 07:50 6P4MDm7esR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmN7gNDmrZRlmn.diag
[2025-10-12 07:50:23] -rw-r--r-- 1 boinc boinc     11715 Oct 12 07:50 stderr.txt
[2025-10-12 07:50:23] HITS file was successfully produced:
[2025-10-12 07:50:23] -rw------- 1 boinc boinc 196471681 Oct 12 07:49 shared/HITS.pool.root.1
[2025-10-12 07:50:23]  *** Contents of shared directory: ***
[2025-10-12 07:50:23] total 410188
[2025-10-12 07:50:23] -rw-r--r-- 2 boinc boinc 221961431 Oct 12 06:27 ATLAS.root_0
[2025-10-12 07:50:23] -rw-r--r-- 2 boinc boinc    569680 Oct 12 06:27 input.tar.gz
[2025-10-12 07:50:23] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:27 start_atlas.sh
[2025-10-12 07:50:23] -rw------- 1 boinc boinc 196471681 Oct 12 07:49 HITS.pool.root.1
[2025-10-12 07:50:23] -rw------- 1 boinc boinc   1003520 Oct 12 07:50 result.tar.gz
07:50:25 (2874237): run_atlas exited; CPU time 14184.098580
07:50:25 (2874237): called boinc_finish(0)

</stderr_txt>
]]>

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