Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:01:00 (694184): wrapper (7.7.26015): starting
16:01:00 (694184): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 16:01:00] Arguments: --nthreads 12
[2025-10-11 16:01:00] Threads: 12
[2025-10-11 16:01:00] Checking for CVMFS
[2025-10-11 16:01:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 16:01:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 16:01:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 16:01:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 16:01:00] 2.13.2.0 3683012 11800 147708 151594 2 196 36296590 40960000 9018 16776704 0 127832165 99.841 55036199 32593 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 16:01:00] CVMFS is ok
[2025-10-11 16:01:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:01:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 16:01:00] Further information can be found at the LHC@home message board.
[2025-10-11 16:01:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:01:00] Checking for apptainer binary...
[2025-10-11 16:01:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 16:01:00] Running /usr/bin/apptainer --version
[2025-10-11 16:01:00] apptainer version 1.4.3-1.el9
[2025-10-11 16:01:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:01:01] c8-7-4.aglt2.org
[2025-10-11 16:01:01] apptainer works
[2025-10-11 16:01:01] Set ATHENA_PROC_NUMBER=12
[2025-10-11 16:01:01] Set ATHENA_CORE_NUMBER=12
[2025-10-11 16:01:01] Starting ATLAS job with PandaID=6838366172
[2025-10-11 16:01:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 16:33:31]  *** The last 200 lines of the pilot log: ***
[2025-10-11 16:33:31]  status_code=0
[2025-10-11 16:33:31]  storage_token=
[2025-10-11 16:33:31]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6838366172/log.46676269._057090.job.log.tgz.1
[2025-10-11 16:33:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/50/log.46676269._057090.job.log.tgz.1
[2025-10-11 16:33:31]  workdir=None
[2025-10-11 16:33:31] ]
[2025-10-11 16:33:31] 2025-10-11 20:32:49,847 | INFO     | transferring file log.46676269._057090.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6838366172/log.46676269._057090.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 16:33:31] 2025-10-11 20:32:49,847 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6838366172/log.46676269._057090.job.log.tgz.1 /tmp/boinchome/slots/2/log.46676269._057090.job
[2025-10-11 16:33:31] 2025-10-11 20:32:49,867 | INFO     | adding to output.list: log.46676269._057090.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/50/log.46676269._057090.job.log.tg
[2025-10-11 16:33:31] 2025-10-11 20:32:49,867 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 16:33:31] 2025-10-11 20:32:49,868 | INFO     | summary of transferred files:
[2025-10-11 16:33:31] 2025-10-11 20:32:49,868 | INFO     |  -- lfn=log.46676269._057090.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 16:33:31] 2025-10-11 20:32:49,868 | INFO     | stage-out finished correctly
[2025-10-11 16:33:31] 2025-10-11 20:32:49,938 | INFO     | time since job start (1899s) is within the limit (172800.0s)
[2025-10-11 16:33:31] 2025-10-11 20:32:51,943 | INFO     | time since job start (1901s) is within the limit (172800.0s)
[2025-10-11 16:33:31] 2025-10-11 20:32:52,181 | WARNING  | process 706012 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 16:33:31] 2025-10-11 20:32:52,182 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6838366172/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 16:33:31] 2025-10-11 20:32:52,537 | INFO     | number of running child processes to parent process 706012: 1
[2025-10-11 16:33:31] 2025-10-11 20:32:52,538 | INFO     | maximum number of monitored processes: 6
[2025-10-11 16:33:31] 2025-10-11 20:32:53,354 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 16:33:31] 2025-10-11 20:32:53,949 | INFO     | time since job start (1903s) is within the limit (172800.0s)
[2025-10-11 16:33:31] 2025-10-11 20:32:55,041 | INFO     | monitor loop #143: job 0:6838366172 is in state 'finished'
[2025-10-11 16:33:31] 2025-10-11 20:32:55,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:33:31] 2025-10-11 20:32:55,783 | INFO     | job 6838366172 has state=finished
[2025-10-11 16:33:31] 2025-10-11 20:32:55,783 | INFO     | preparing for final server update for job 6838366172 in state='finished'
[2025-10-11 16:33:31] 2025-10-11 20:32:55,784 | INFO     | this job has now completed (state=finished)
[2025-10-11 16:33:31] 2025-10-11 20:32:55,784 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 16:33:31] 2025-10-11 20:32:55,784 | INFO     | log transfer has been attempted: DONE
[2025-10-11 16:33:31] 2025-10-11 20:32:55,784 | INFO     | job 6838366172 has finished - writing final server update
[2025-10-11 16:33:31] 2025-10-11 20:32:55,784 | INFO     | total number of processed events: 400 (read)
[2025-10-11 16:33:31] 2025-10-11 20:32:55,785 | INFO     | executing command: lscpu
[2025-10-11 16:33:31] 2025-10-11 20:32:55,853 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 16:33:31] 2025-10-11 20:32:55,955 | INFO     | time since job start (1905s) is within the limit (172800.0s)
[2025-10-11 16:33:31] 2025-10-11 20:32:57,544 | INFO     | monitor loop #144: job 0:6838366172 is in state 'finished'
[2025-10-11 16:33:31] 2025-10-11 20:32:57,544 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:33:31] 2025-10-11 20:32:57,962 | INFO     | time since job start (1907s) is within the limit (172800.0s)
[2025-10-11 16:33:31] 2025-10-11 20:32:59,524 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 16:33:31] 2025-10-11 20:32:59,542 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3731.4311171874942
[2025-10-11 16:33:31] 2025-10-11 20:32:59,557 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6838366172/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 16:33:31] 2025-10-11 20:32:59,558 | INFO     | extracted standard info from prmon json
[2025-10-11 16:33:31] 2025-10-11 20:32:59,558 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 16:33:31] 2025-10-11 20:32:59,558 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 16:33:31] 2025-10-11 20:32:59,558 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 16:33:31] 2025-10-11 20:32:59,558 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 16:33:31] 2025-10-11 20:32:59,559 | INFO     | fitting pss+swap vs Time
[2025-10-11 16:33:31] 2025-10-11 20:32:59,559 | INFO     | sum of square deviations: 4279150.0
[2025-10-11 16:33:31] 2025-10-11 20:32:59,559 | INFO     | sum of deviations: -132495324.5
[2025-10-11 16:33:31] 2025-10-11 20:32:59,559 | INFO     | mean x: 1760213901.5
[2025-10-11 16:33:31] 2025-10-11 20:32:59,559 | INFO     | mean y: 2367252.375
[2025-10-11 16:33:31] 2025-10-11 20:32:59,559 | INFO     | -- intersect: 54503871539.1267
[2025-10-11 16:33:31] 2025-10-11 20:32:59,559 | INFO     | intersect: 54503871539.1267
[2025-10-11 16:33:31] 2025-10-11 20:32:59,559 | INFO     | chi2: 0.0012724484813127735
[2025-10-11 16:33:31] 2025-10-11 20:32:59,559 | INFO     | -- intersect: 54503871539.1267
[2025-10-11 16:33:31] 2025-10-11 20:32:59,559 | INFO     | current memory leak: -30.96 B/s (using 24 data points, chi2=0.00)
[2025-10-11 16:33:31] 2025-10-11 20:32:59,559 | INFO     | could have reported an average CPU frequency of 3734 MHz (5 samples)
[2025-10-11 16:33:31] 2025-10-11 20:32:59,560 | INFO     | ..............................
[2025-10-11 16:33:31] 2025-10-11 20:32:59,560 | INFO     | . Timing measurements:
[2025-10-11 16:33:31] 2025-10-11 20:32:59,560 | INFO     | . get job = 0 s
[2025-10-11 16:33:31] 2025-10-11 20:32:59,560 | INFO     | . initial setup = 2 s
[2025-10-11 16:33:31] 2025-10-11 20:32:59,560 | INFO     | . payload setup = 4 s
[2025-10-11 16:33:31] 2025-10-11 20:32:59,560 | INFO     | . stage-in = 0 s
[2025-10-11 16:33:31] 2025-10-11 20:32:59,560 | INFO     | . payload execution = 1875 s
[2025-10-11 16:33:31] 2025-10-11 20:32:59,560 | INFO     | . stage-out = 0 s
[2025-10-11 16:33:31] 2025-10-11 20:32:59,560 | INFO     | . log creation = 0 s
[2025-10-11 16:33:31] 2025-10-11 20:32:59,560 | INFO     | ..............................
[2025-10-11 16:33:31] 2025-10-11 20:32:59,616 | INFO     | 
[2025-10-11 16:33:31] 2025-10-11 20:32:59,616 | INFO     | job summary report
[2025-10-11 16:33:31] 2025-10-11 20:32:59,616 | INFO     | --------------------------------------------------
[2025-10-11 16:33:31] 2025-10-11 20:32:59,616 | INFO     | PanDA job id: 6838366172
[2025-10-11 16:33:31] 2025-10-11 20:32:59,616 | INFO     | task id: 46676269
[2025-10-11 16:33:31] 2025-10-11 20:32:59,616 | INFO     | errors: (none)
[2025-10-11 16:33:31] 2025-10-11 20:32:59,616 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 16:33:31] 2025-10-11 20:32:59,616 | INFO     | pilot state: finished 
[2025-10-11 16:33:31] 2025-10-11 20:32:59,616 | INFO     | transexitcode: 0
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | exeerrorcode: 0
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | exeerrordiag: 
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | exitcode: 0
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | exitmsg: OK
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | cpuconsumptiontime: 19746 s
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | nevents: 400
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | neventsw: 0
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | pid: 706012
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | pgrp: 706012
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | corecount: 12
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | event service: False
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 1883: 2374122, 1884: 2383120, 1887: 2383176, 1894: 2383530}
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | --------------------------------------------------
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | 
[2025-10-11 16:33:31] 2025-10-11 20:32:59,617 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-11 16:33:31] 2025-10-11 20:32:59,634 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 16:33:31] 2025-10-11 20:32:59,635 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,636 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 16:33:31] 2025-10-11 20:32:59,636 | INFO     | job 6838366172 has completed (purged errors)
[2025-10-11 16:33:31] 2025-10-11 20:32:59,636 | INFO     | overall cleanup function is called
[2025-10-11 16:33:31] 2025-10-11 20:33:00,643 | INFO     | --- collectZombieJob: --- 10, [706012]
[2025-10-11 16:33:31] 2025-10-11 20:33:00,644 | INFO     | zombie collector waiting for pid 706012
[2025-10-11 16:33:31] 2025-10-11 20:33:00,644 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 16:33:31] 2025-10-11 20:33:00,644 | INFO     | collected zombie processes
[2025-10-11 16:33:31] 2025-10-11 20:33:00,644 | INFO     | will attempt to kill all subprocesses of pid=706012
[2025-10-11 16:33:31] 2025-10-11 20:33:00,995 | INFO     | process IDs to be killed: [706012] (in reverse order)
[2025-10-11 16:33:31] 2025-10-11 20:33:01,121 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 16:33:31] 2025-10-11 20:33:01,121 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 16:33:31] 2025-10-11 20:33:01,140 | INFO     | did not find any defunct processes belonging to 706012
[2025-10-11 16:33:31] 2025-10-11 20:33:01,155 | INFO     | did not find any defunct processes belonging to 706012
[2025-10-11 16:33:31] 2025-10-11 20:33:01,155 | INFO     | ready for new job
[2025-10-11 16:33:31] 2025-10-11 20:33:01,155 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 16:33:31] 2025-10-11 20:33:01,156 | INFO     | ***************************************
[2025-10-11 16:33:31] 2025-10-11 20:33:01,156 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 16:33:31] 2025-10-11 20:33:01,156 | INFO     | ***************************************
[2025-10-11 16:33:31] 2025-10-11 20:33:01,156 | INFO     | 
[2025-10-11 16:33:31] 2025-10-11 20:33:01,174 | INFO     | architecture information:
[2025-10-11 16:33:31] 2025-10-11 20:33:01,174 | INFO     | executing command: cat /etc/os-release
[2025-10-11 16:33:31] 2025-10-11 20:33:01,186 | INFO     | cat /etc/os-release:
[2025-10-11 16:33:31] NAME="CentOS Linux"
[2025-10-11 16:33:31] VERSION="7 (Core)"
[2025-10-11 16:33:31] ID="centos"
[2025-10-11 16:33:31] ID_LIKE="rhel fedora"
[2025-10-11 16:33:31] VERSION_ID="7"
[2025-10-11 16:33:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 16:33:31] ANSI_COLOR="0;31"
[2025-10-11 16:33:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 16:33:31] HOME_URL="https://www.centos.org/"
[2025-10-11 16:33:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 16:33:31] 
[2025-10-11 16:33:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 16:33:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 16:33:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 16:33:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 16:33:31] 
[2025-10-11 16:33:31] 2025-10-11 20:33:01,186 | INFO     | ***************************************
[2025-10-11 16:33:31] 2025-10-11 20:33:01,689 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-11 16:33:31] 2025-10-11 20:33:01,704 | INFO     | sufficient remaining disk space (168380334080 B)
[2025-10-11 16:33:31] 2025-10-11 20:33:01,704 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 16:33:31] 2025-10-11 20:33:01,705 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 16:33:31] 2025-10-11 20:33:01,705 | INFO     | update_server=False
[2025-10-11 16:33:31] 2025-10-11 20:33:01,705 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 16:33:31] 2025-10-11 20:33:01,705 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:33:31] 2025-10-11 20:33:01,705 | INFO     | aborting loop
[2025-10-11 16:33:31] 2025-10-11 20:33:02,066 | INFO     | all payload control threads have been joined
[2025-10-11 16:33:31] 2025-10-11 20:33:02,653 | INFO     | all data control threads have been joined
[2025-10-11 16:33:31] 2025-10-11 20:33:02,707 | INFO     | [job] retrieve thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:02,711 | INFO     | [job] job monitor thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:02,896 | INFO     | [data] copytool_in thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:02,932 | INFO     | all job control threads have been joined
[2025-10-11 16:33:31] 2025-10-11 20:33:02,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 16:33:31] 2025-10-11 20:33:03,072 | INFO     | [payload] control thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:03,186 | INFO     | [payload] validate_post thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:03,428 | INFO     | [job] validate thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:03,551 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:03,611 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:03,659 | INFO     | [data] control thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:03,847 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:03,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 16:33:31] 2025-10-11 20:33:03,937 | INFO     | [job] control thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:04,094 | INFO     | [payload] failed_post thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:04,161 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:04,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:33:31] 2025-10-11 20:33:04,944 | INFO     | [data] copytool_out thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:05,631 | INFO     | [job] queue monitor thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:07,923 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 16:33:31] 2025-10-11 20:33:13,143 | INFO     | [monitor] cgroup control has ended
[2025-10-11 16:33:31] 2025-10-11 20:33:13,662 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140136659498816)>', '<ExcThread(monitor, started 140136176146176)>']
[2025-10-11 16:33:31] 2025-10-11 20:33:18,688 | INFO     | all workflow threads have been joined
[2025-10-11 16:33:31] 2025-10-11 20:33:18,689 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 16:33:31] 2025-10-11 20:33:18,689 | INFO     | traces error code: 0
[2025-10-11 16:33:31] 2025-10-11 20:33:18,689 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 16:33:31] 2025-10-11 20:33:31,508 | INFO     | PID=698841 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 16:33:31] 2025-10-11 20:33:31,509 | INFO     | .. there are 12 such processes running
[2025-10-11 16:33:31] 2025-10-11 20:33:31,509 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 16:33:31] 2025-10-11 20:33:31,509 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 16:33:31] 2025-10-11 20:33:31,509 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 16:33:31] 2025-10-11 20:33:31,509 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 16:33:31] 2025-10-11 20:33:31,509 | INFO     | [monitor] control thread has ended
[2025-10-11 16:33:31] 2025-10-11 20:33:31,596 [wrapper] ==== pilot stdout END ====
[2025-10-11 16:33:31] 2025-10-11 20:33:31,598 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 16:33:31] 2025-10-11 20:33:31,600 [wrapper] pilotpid: 698841
[2025-10-11 16:33:31] 2025-10-11 20:33:31,602 [wrapper] Pilot exit status: 0
[2025-10-11 16:33:31] 2025-10-11 20:33:31,611 [wrapper] pandaids: 6838366172
[2025-10-11 16:33:31] 2025-10-11 20:33:31,704 [wrapper] cleanup supervisor_pilot  930836 698843
[2025-10-11 16:33:31] 2025-10-11 20:33:31,707 [wrapper] Test setup, not cleaning
[2025-10-11 16:33:31] 2025-10-11 20:33:31,709 [wrapper] apfmon messages muted
[2025-10-11 16:33:31] 2025-10-11 20:33:31,712 [wrapper] ==== wrapper stdout END ====
[2025-10-11 16:33:31] 2025-10-11 20:33:31,714 [wrapper] ==== wrapper stderr END ====
[2025-10-11 16:33:31]  *** Error codes and diagnostics ***
[2025-10-11 16:33:31]     "exeErrorCode": 0,
[2025-10-11 16:33:31]     "exeErrorDiag": "",
[2025-10-11 16:33:31]     "pilotErrorCode": 0,
[2025-10-11 16:33:31]     "pilotErrorDiag": "",
[2025-10-11 16:33:31]  *** Listing of results directory ***
[2025-10-11 16:33:31] total 410520
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 07:21 pilot3.tar.gz
[2025-10-11 16:33:31] -rwx------. 1 boincer umatlas     36292 Oct 11 07:45 runpilot2-wrapper.sh
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 07:45 queuedata.json
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas       100 Oct 11 16:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 16:33:31] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 16:01 run_atlas
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas       105 Oct 11 16:01 job.xml
[2025-10-11 16:33:31] -rw-r--r--. 2 boincer umatlas 219956059 Oct 11 16:01 EVNT.46676267._002292.pool.root.1
[2025-10-11 16:33:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 16:01 start_atlas.sh
[2025-10-11 16:33:31] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 16:01 shared
[2025-10-11 16:33:31] -rw-r--r--. 2 boincer umatlas    569683 Oct 11 16:01 input.tar.gz
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas         0 Oct 11 16:01 boinc_lockfile
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 16:01 pandaJob.out
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas    975512 Oct 11 16:01 agis_schedconf.cvmfs.json
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas   1560580 Oct 11 16:01 agis_ddmendpoints.agis.ALL.json
[2025-10-11 16:33:31] drwx------. 5 boincer umatlas      4096 Oct 11 16:01 pilot3
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas      7164 Oct 11 16:29 init_data.xml
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas       530 Oct 11 16:32 boinc_task_state.xml
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas 195201854 Oct 11 16:32 HITS.46676269._057090.pool.root.1
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas      1042 Oct 11 16:32 memory_monitor_summary.json
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas        95 Oct 11 16:32 pilot_heartbeat.json
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas    340937 Oct 11 16:32 log.46676269._057090.job.log.tgz.1
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas      7773 Oct 11 16:32 heartbeat.json
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 16:33 boinc_mmap_file
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas        27 Oct 11 16:33 wrapper_checkpoint.txt
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas       822 Oct 11 16:33 pilotlog.txt
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas    313696 Oct 11 16:33 log.46676269._057090.job.log.1
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas       357 Oct 11 16:33 output.list
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas       620 Oct 11 16:33 runtime_log
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas    675840 Oct 11 16:33 result.tar.gz
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas      8695 Oct 11 16:33 runtime_log.err
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas       650 Oct 11 16:33 dRNODmzDnR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDMgNDmnIeodn.diag
[2025-10-11 16:33:31] -rw-r--r--. 1 boincer umatlas     22100 Oct 11 16:33 stderr.txt
[2025-10-11 16:33:31] HITS file was successfully produced:
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas 195201854 Oct 11 16:32 shared/HITS.pool.root.1
[2025-10-11 16:33:31]  *** Contents of shared directory: ***
[2025-10-11 16:33:31] total 406676
[2025-10-11 16:33:31] -rw-r--r--. 2 boincer umatlas 219956059 Oct 11 16:01 ATLAS.root_0
[2025-10-11 16:33:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 16:01 start_atlas.sh
[2025-10-11 16:33:31] -rw-r--r--. 2 boincer umatlas    569683 Oct 11 16:01 input.tar.gz
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas 195201854 Oct 11 16:32 HITS.pool.root.1
[2025-10-11 16:33:31] -rw-------. 1 boincer umatlas    675840 Oct 11 16:33 result.tar.gz
16:33:33 (694184): run_atlas exited; CPU time 19780.514175
16:33:33 (694184): called boinc_finish(0)

</stderr_txt>
]]>

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