Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:59:21 (2104390): wrapper (7.7.26015): starting
06:59:21 (2104390): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 06:59:21] Arguments: --nthreads 2
[2025-10-12 06:59:21] Threads: 2
[2025-10-12 06:59:21] Checking for CVMFS
[2025-10-12 06:59:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:59:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:59:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:59:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:59:22] 2.9.2.0 1214728 3872 62360 151608 3 57 26380500 36864001 0 130560 0 2351402 99.988 130452 876 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 06:59:22] CVMFS is ok
[2025-10-12 06:59:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 06:59:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 06:59:22] Further information can be found at the LHC@home message board.
[2025-10-12 06:59:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:59:22] Checking for apptainer binary...
[2025-10-12 06:59:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 06:59:22] Running /usr/bin/apptainer --version
[2025-10-12 06:59:22] apptainer version 1.4.1-1.1
[2025-10-12 06:59:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:59:22] madmaxA277a
[2025-10-12 06:59:22] apptainer works
[2025-10-12 06:59:22] Set ATHENA_PROC_NUMBER=2
[2025-10-12 06:59:22] Set ATHENA_CORE_NUMBER=2
[2025-10-12 06:59:22] Starting ATLAS job with PandaID=6838454054
[2025-10-12 06:59:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:06:53]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:06:53] 2025-10-12 07:06:23,937 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:06:53] 2025-10-12 07:06:23,937 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:06:53] 2025-10-12 07:06:23,938 | INFO     | did not find any defunct processes belonging to 2114526
[2025-10-12 09:06:53] 2025-10-12 07:06:23,938 | INFO     | did not find any defunct processes belonging to 2114526
[2025-10-12 09:06:53] 2025-10-12 07:06:23,939 | INFO     | ready for new job
[2025-10-12 09:06:53] 2025-10-12 07:06:23,939 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:06:53] 2025-10-12 07:06:23,939 | INFO     | ***************************************
[2025-10-12 09:06:53] 2025-10-12 07:06:23,939 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:06:53] 2025-10-12 07:06:23,939 | INFO     | ***************************************
[2025-10-12 09:06:53] 2025-10-12 07:06:23,939 | INFO     | 
[2025-10-12 09:06:53] 2025-10-12 07:06:23,939 | INFO     | architecture information:
[2025-10-12 09:06:53] 2025-10-12 07:06:23,939 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:06:53] 2025-10-12 07:06:23,947 | INFO     | cat /etc/os-release:
[2025-10-12 09:06:53] NAME="CentOS Linux"
[2025-10-12 09:06:53] VERSION="7 (Core)"
[2025-10-12 09:06:53] ID="centos"
[2025-10-12 09:06:53] ID_LIKE="rhel fedora"
[2025-10-12 09:06:53] VERSION_ID="7"
[2025-10-12 09:06:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:06:53] ANSI_COLOR="0;31"
[2025-10-12 09:06:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:06:53] HOME_URL="https://www.centos.org/"
[2025-10-12 09:06:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:06:53] 
[2025-10-12 09:06:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:06:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:06:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:06:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:06:53] 
[2025-10-12 09:06:53] 2025-10-12 07:06:23,948 | INFO     | ***************************************
[2025-10-12 09:06:53] 2025-10-12 07:06:24,451 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 09:06:53] 2025-10-12 07:06:24,481 | INFO     | sufficient remaining disk space (492182700032 B)
[2025-10-12 09:06:53] 2025-10-12 07:06:24,481 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:06:53] 2025-10-12 07:06:24,482 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:06:53] 2025-10-12 07:06:24,482 | INFO     | update_server=False
[2025-10-12 09:06:53] 2025-10-12 07:06:24,482 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:06:53] 2025-10-12 07:06:24,482 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:06:53] 2025-10-12 07:06:24,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:06:53] 2025-10-12 07:06:24,483 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 09:06:53] 2025-10-12 07:06:24,484 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:06:53] 2025-10-12 07:06:24,484 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:06:53] 2025-10-12 07:06:24,484 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:06:53] 2025-10-12 07:06:24,598 | INFO     | all data control threads have been joined
[2025-10-12 09:06:53] 2025-10-12 07:06:24,720 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 09:06:53] 2025-10-12 07:06:24,720 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 09:06:53] 2025-10-12 07:06:24,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:06:53] 2025-10-12 07:06:24,720 | INFO     | will abort loop
[2025-10-12 09:06:53] 2025-10-12 07:06:25,102 | INFO     | all payload control threads have been joined
[2025-10-12 09:06:53] 2025-10-12 07:06:25,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:06:53] 2025-10-12 07:06:25,488 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:25,489 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:25,604 | INFO     | [data] control thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:25,726 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:25,734 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:25,918 | INFO     | all job control threads have been joined
[2025-10-12 09:06:53] 2025-10-12 07:06:26,097 | INFO     | [job] validate thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:26,108 | INFO     | [payload] control thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:26,310 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:26,408 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:26,489 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:26,563 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:26,794 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:26,813 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:26,923 | INFO     | [job] control thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:29,236 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:34,636 | INFO     | job.realtimelogging is not enabled
[2025-10-12 09:06:53] 2025-10-12 07:06:35,642 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:06:53] 2025-10-12 07:06:46,637 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:06:53] 2025-10-12 07:06:48,162 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140481113990976)>', '<ExcThread(monitor, started 140480260077312)>']
[2025-10-12 09:06:53] 2025-10-12 07:06:48,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:06:53] 2025-10-12 07:06:48,605 | INFO     | [monitor] control thread has ended
[2025-10-12 09:06:53] 2025-10-12 07:06:53,188 | INFO     | all workflow threads have been joined
[2025-10-12 09:06:53] 2025-10-12 07:06:53,188 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:06:53] 2025-10-12 07:06:53,189 | INFO     | traces error code: 0
[2025-10-12 09:06:53] 2025-10-12 07:06:53,189 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:06:53] 2025-10-12 07:06:53,231 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:06:53] 2025-10-12 07:06:53,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:06:53] 2025-10-12 07:06:53,236 [wrapper] pilotpid: 2108096
[2025-10-12 09:06:53] 2025-10-12 07:06:53,238 [wrapper] Pilot exit status: 0
[2025-10-12 09:06:53] 2025-10-12 07:06:53,243 [wrapper] pandaids: 6838454054
[2025-10-12 09:06:53] 2025-10-12 07:06:53,255 [wrapper] cleanup supervisor_pilot 2128510 2108097
[2025-10-12 09:06:53] 2025-10-12 07:06:53,257 [wrapper] Test setup, not cleaning
[2025-10-12 09:06:53] 2025-10-12 07:06:53,259 [wrapper] apfmon messages muted
[2025-10-12 09:06:53] 2025-10-12 07:06:53,261 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:06:53] 2025-10-12 07:06:53,262 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:06:53]  *** Error codes and diagnostics ***
[2025-10-12 09:06:53]     "exeErrorCode": 0,
[2025-10-12 09:06:53]     "exeErrorDiag": "",
[2025-10-12 09:06:53]     "pilotErrorCode": 0,
[2025-10-12 09:06:53]     "pilotErrorDiag": "",
[2025-10-12 09:06:53]  *** Listing of results directory ***
[2025-10-12 09:06:53] total 410024
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc    557409 Oct 11 16:01 pilot3.tar.gz
[2025-10-12 09:06:53] -rwx------ 1 boinc boinc     36292 Oct 11 16:31 runpilot2-wrapper.sh
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc      5112 Oct 11 16:31 queuedata.json
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc       100 Oct 12 06:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:06:53] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 06:59 run_atlas
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc       105 Oct 12 06:59 job.xml
[2025-10-12 09:06:53] -rw-r--r-- 2 boinc boinc 221630563 Oct 12 06:59 EVNT.46676267._002387.pool.root.1
[2025-10-12 09:06:53] drwxrwx--x 2 boinc boinc      4096 Oct 12 06:59 shared
[2025-10-12 09:06:53] -rw-r--r-- 2 boinc boinc    569678 Oct 12 06:59 input.tar.gz
[2025-10-12 09:06:53] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:59 start_atlas.sh
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:59 boinc_setup_complete
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc      6210 Oct 12 06:59 init_data.xml
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:59 boinc_lockfile
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc      2550 Oct 12 06:59 pandaJob.out
[2025-10-12 09:06:53] -rw------- 1 boinc boinc    975512 Oct 12 06:59 agis_schedconf.cvmfs.json
[2025-10-12 09:06:53] -rw------- 1 boinc boinc   1560580 Oct 12 06:59 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:06:53] drwx------ 5 boinc boinc      4096 Oct 12 06:59 pilot3
[2025-10-12 09:06:53] -rw------- 1 boinc boinc 191592734 Oct 12 09:05 HITS.46676269._059379.pool.root.1
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc       530 Oct 12 09:05 boinc_task_state.xml
[2025-10-12 09:06:53] -rw------- 1 boinc boinc        95 Oct 12 09:06 pilot_heartbeat.json
[2025-10-12 09:06:53] -rw------- 1 boinc boinc      1020 Oct 12 09:06 memory_monitor_summary.json
[2025-10-12 09:06:53] -rw------- 1 boinc boinc    270574 Oct 12 09:06 log.46676269._059379.job.log.tgz.1
[2025-10-12 09:06:53] -rw------- 1 boinc boinc      7762 Oct 12 09:06 heartbeat.json
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc      8192 Oct 12 09:06 boinc_mmap_file
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc        27 Oct 12 09:06 wrapper_checkpoint.txt
[2025-10-12 09:06:53] -rw------- 1 boinc boinc      4814 Oct 12 09:06 pilotlog.txt
[2025-10-12 09:06:53] -rw------- 1 boinc boinc   1097742 Oct 12 09:06 log.46676269._059379.job.log.1
[2025-10-12 09:06:53] -rw------- 1 boinc boinc       357 Oct 12 09:06 output.list
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc       620 Oct 12 09:06 runtime_log
[2025-10-12 09:06:53] -rw------- 1 boinc boinc   1392640 Oct 12 09:06 result.tar.gz
[2025-10-12 09:06:53] -rw------- 1 boinc boinc       664 Oct 12 09:06 xv6LDmtnpR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyggNDmgtGiEo.diag
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc      8802 Oct 12 09:06 runtime_log.err
[2025-10-12 09:06:53] -rw-r--r-- 1 boinc boinc     10220 Oct 12 09:06 stderr.txt
[2025-10-12 09:06:53] HITS file was successfully produced:
[2025-10-12 09:06:53] -rw------- 1 boinc boinc 191592734 Oct 12 09:05 shared/HITS.pool.root.1
[2025-10-12 09:06:53]  *** Contents of shared directory: ***
[2025-10-12 09:06:53] total 405488
[2025-10-12 09:06:53] -rw-r--r-- 2 boinc boinc 221630563 Oct 12 06:59 ATLAS.root_0
[2025-10-12 09:06:53] -rw-r--r-- 2 boinc boinc    569678 Oct 12 06:59 input.tar.gz
[2025-10-12 09:06:53] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:59 start_atlas.sh
[2025-10-12 09:06:53] -rw------- 1 boinc boinc 191592734 Oct 12 09:05 HITS.pool.root.1
[2025-10-12 09:06:53] -rw------- 1 boinc boinc   1392640 Oct 12 09:06 result.tar.gz
09:06:54 (2104390): run_atlas exited; CPU time 14770.284264
09:06:54 (2104390): called boinc_finish(0)

</stderr_txt>
]]>

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