Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:38:09 (3552838): wrapper (7.7.26015): starting
15:38:09 (3552838): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 15:38:09] Arguments: --nthreads 8
[2025-10-11 15:38:09] Threads: 8
[2025-10-11 15:38:09] Checking for CVMFS
[2025-10-11 15:38:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 15:38:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 15:38:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 15:38:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 15:38:11] 2.13.2.0 552491 35997 171956 151594 3 731 24262116 40960000 66007 16776704 0 378204721 99.797 196702333 32724 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 15:38:11] CVMFS is ok
[2025-10-11 15:38:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 15:38:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 15:38:11] Further information can be found at the LHC@home message board.
[2025-10-11 15:38:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 15:38:11] Checking for apptainer binary...
[2025-10-11 15:38:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 15:38:11] Running /usr/bin/apptainer --version
[2025-10-11 15:38:11] apptainer version 1.4.3-1.el9
[2025-10-11 15:38:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 15:38:12] c8-7-5.aglt2.org
[2025-10-11 15:38:12] apptainer works
[2025-10-11 15:38:12] Set ATHENA_PROC_NUMBER=8
[2025-10-11 15:38:12] Set ATHENA_CORE_NUMBER=8
[2025-10-11 15:38:12] Starting ATLAS job with PandaID=6838293376
[2025-10-11 15:38:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 17:02:58]  *** The last 200 lines of the pilot log: ***
[2025-10-11 17:02:58] ]
[2025-10-11 17:02:58] 2025-10-11 21:02:12,530 | INFO     | transferring file log.46676269._055324.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6838293376/log.46676269._055324.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 17:02:58] 2025-10-11 21:02:12,530 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6838293376/log.46676269._055324.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._055324.job
[2025-10-11 17:02:58] 2025-10-11 21:02:12,548 | INFO     | adding to output.list: log.46676269._055324.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/ee/log.46676269._055324.job.log.tg
[2025-10-11 17:02:58] 2025-10-11 21:02:12,548 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 17:02:58] 2025-10-11 21:02:12,548 | INFO     | summary of transferred files:
[2025-10-11 17:02:58] 2025-10-11 21:02:12,548 | INFO     |  -- lfn=log.46676269._055324.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 17:02:58] 2025-10-11 21:02:12,549 | INFO     | stage-out finished correctly
[2025-10-11 17:02:58] 2025-10-11 21:02:12,685 | INFO     | monitor loop #316: job 0:6838293376 is in state 'finished'
[2025-10-11 17:02:58] 2025-10-11 21:02:12,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 17:02:58] 2025-10-11 21:02:13,021 | INFO     | time since job start (4969s) is within the limit (172800.0s)
[2025-10-11 17:02:58] 2025-10-11 21:02:15,027 | INFO     | time since job start (4971s) is within the limit (172800.0s)
[2025-10-11 17:02:58] 2025-10-11 21:02:15,203 | INFO     | monitor loop #317: job 0:6838293376 is in state 'finished'
[2025-10-11 17:02:58] 2025-10-11 21:02:15,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 17:02:58] 2025-10-11 21:02:15,522 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 17:02:58] 2025-10-11 21:02:16,583 | INFO     | job 6838293376 has state=finished
[2025-10-11 17:02:58] 2025-10-11 21:02:16,584 | INFO     | preparing for final server update for job 6838293376 in state='finished'
[2025-10-11 17:02:58] 2025-10-11 21:02:16,584 | INFO     | this job has now completed (state=finished)
[2025-10-11 17:02:58] 2025-10-11 21:02:16,584 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 17:02:58] 2025-10-11 21:02:16,584 | INFO     | log transfer has been attempted: DONE
[2025-10-11 17:02:58] 2025-10-11 21:02:16,584 | INFO     | job 6838293376 has finished - writing final server update
[2025-10-11 17:02:58] 2025-10-11 21:02:16,584 | INFO     | total number of processed events: 400 (read)
[2025-10-11 17:02:58] 2025-10-11 21:02:16,585 | INFO     | executing command: lscpu
[2025-10-11 17:02:58] 2025-10-11 21:02:16,646 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 17:02:58] 2025-10-11 21:02:17,034 | INFO     | time since job start (4973s) is within the limit (172800.0s)
[2025-10-11 17:02:58] 2025-10-11 21:02:17,707 | INFO     | monitor loop #318: job 0:6838293376 is in state 'finished'
[2025-10-11 17:02:58] 2025-10-11 21:02:17,707 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 17:02:58] 2025-10-11 21:02:19,039 | INFO     | time since job start (4975s) is within the limit (172800.0s)
[2025-10-11 17:02:58] 2025-10-11 21:02:20,211 | INFO     | monitor loop #319: job 0:6838293376 is in state 'finished'
[2025-10-11 17:02:58] 2025-10-11 21:02:20,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 17:02:58] 2025-10-11 21:02:21,045 | INFO     | time since job start (4977s) is within the limit (172800.0s)
[2025-10-11 17:02:58] 2025-10-11 21:02:22,721 | INFO     | monitor loop #320: job 0:6838293376 is in state 'finished'
[2025-10-11 17:02:58] 2025-10-11 21:02:22,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 17:02:58] 2025-10-11 21:02:22,910 | INFO     | PID=3560765 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 17:02:58] 2025-10-11 21:02:22,911 | INFO     | .. there are 86 such processes running
[2025-10-11 17:02:58] 2025-10-11 21:02:23,911 | INFO     | time since job start (4979s) is within the limit (172800.0s)
[2025-10-11 17:02:58] 2025-10-11 21:02:24,589 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 17:02:58] 2025-10-11 21:02:24,594 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9918046875046
[2025-10-11 17:02:58] 2025-10-11 21:02:24,606 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6838293376/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 17:02:58] 2025-10-11 21:02:24,606 | INFO     | extracted standard info from prmon json
[2025-10-11 17:02:58] 2025-10-11 21:02:24,606 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 17:02:58] 2025-10-11 21:02:24,606 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 17:02:58] 2025-10-11 21:02:24,606 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 17:02:58] 2025-10-11 21:02:24,607 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 17:02:58] 2025-10-11 21:02:24,607 | INFO     | fitting pss+swap vs Time
[2025-10-11 17:02:58] 2025-10-11 21:02:24,608 | INFO     | sum of square deviations: 120613727.31506869
[2025-10-11 17:02:58] 2025-10-11 21:02:24,608 | INFO     | sum of deviations: 1123979501.150685
[2025-10-11 17:02:58] 2025-10-11 21:02:24,608 | INFO     | mean x: 1760214187.1917808
[2025-10-11 17:02:58] 2025-10-11 21:02:24,608 | INFO     | mean y: 2368491.9178082193
[2025-10-11 17:02:58] 2025-10-11 21:02:24,608 | INFO     | -- intersect: -16400778215.173487
[2025-10-11 17:02:58] 2025-10-11 21:02:24,608 | INFO     | intersect: -16400778215.173487
[2025-10-11 17:02:58] 2025-10-11 21:02:24,608 | INFO     | chi2: 0.0402939468267048
[2025-10-11 17:02:58] 2025-10-11 21:02:24,608 | INFO     | -- intersect: -16400778215.173487
[2025-10-11 17:02:58] 2025-10-11 21:02:24,608 | INFO     | current memory leak: 9.32 B/s (using 73 data points, chi2=0.04)
[2025-10-11 17:02:58] 2025-10-11 21:02:24,608 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-11 17:02:58] 2025-10-11 21:02:24,609 | INFO     | ..............................
[2025-10-11 17:02:58] 2025-10-11 21:02:24,609 | INFO     | . Timing measurements:
[2025-10-11 17:02:58] 2025-10-11 21:02:24,609 | INFO     | . get job = 0 s
[2025-10-11 17:02:58] 2025-10-11 21:02:24,609 | INFO     | . initial setup = 5 s
[2025-10-11 17:02:58] 2025-10-11 21:02:24,609 | INFO     | . payload setup = 30 s
[2025-10-11 17:02:58] 2025-10-11 21:02:24,609 | INFO     | . stage-in = 0 s
[2025-10-11 17:02:58] 2025-10-11 21:02:24,609 | INFO     | . payload execution = 4873 s
[2025-10-11 17:02:58] 2025-10-11 21:02:24,609 | INFO     | . stage-out = 0 s
[2025-10-11 17:02:58] 2025-10-11 21:02:24,609 | INFO     | . log creation = 0 s
[2025-10-11 17:02:58] 2025-10-11 21:02:24,609 | INFO     | ..............................
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | 
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | job summary report
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | --------------------------------------------------
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | PanDA job id: 6838293376
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | task id: 46676269
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | errors: (none)
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | pilot state: finished 
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | transexitcode: 0
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | exeerrorcode: 0
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | exeerrordiag: 
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | exitcode: 0
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | exitmsg: OK
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | cpuconsumptiontime: 22623 s
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | nevents: 400
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | neventsw: 0
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | pid: 3584343
[2025-10-11 17:02:58] 2025-10-11 21:02:24,665 | INFO     | pgrp: 3584343
[2025-10-11 17:02:58] 2025-10-11 21:02:24,666 | INFO     | corecount: 8
[2025-10-11 17:02:58] 2025-10-11 21:02:24,666 | INFO     | event service: False
[2025-10-11 17:02:58] 2025-10-11 21:02:24,666 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2348913, 31: 2349203, 34: 2349231, 4907: 2375632, 4908: 2384630, 4911: 2384686, 4920: 2384880}
[2025-10-11 17:02:58] 2025-10-11 21:02:24,666 | INFO     | --------------------------------------------------
[2025-10-11 17:02:58] 2025-10-11 21:02:24,666 | INFO     | 
[2025-10-11 17:02:58] 2025-10-11 21:02:24,666 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-11 17:02:58] 2025-10-11 21:02:24,696 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,697 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 17:02:58] 2025-10-11 21:02:24,698 | INFO     | job 6838293376 has completed (purged errors)
[2025-10-11 17:02:58] 2025-10-11 21:02:24,698 | INFO     | overall cleanup function is called
[2025-10-11 17:02:58] 2025-10-11 21:02:25,705 | INFO     | --- collectZombieJob: --- 10, [3584343]
[2025-10-11 17:02:58] 2025-10-11 21:02:25,712 | INFO     | zombie collector waiting for pid 3584343
[2025-10-11 17:02:58] 2025-10-11 21:02:25,713 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 17:02:58] 2025-10-11 21:02:25,713 | INFO     | collected zombie processes
[2025-10-11 17:02:58] 2025-10-11 21:02:25,713 | INFO     | will attempt to kill all subprocesses of pid=3584343
[2025-10-11 17:02:58] 2025-10-11 21:02:26,319 | INFO     | process IDs to be killed: [3584343] (in reverse order)
[2025-10-11 17:02:58] 2025-10-11 21:02:26,521 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 17:02:58] 2025-10-11 21:02:26,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 17:02:58] 2025-10-11 21:02:26,552 | INFO     | did not find any defunct processes belonging to 3584343
[2025-10-11 17:02:58] 2025-10-11 21:02:26,582 | INFO     | did not find any defunct processes belonging to 3584343
[2025-10-11 17:02:58] 2025-10-11 21:02:26,582 | INFO     | ready for new job
[2025-10-11 17:02:58] 2025-10-11 21:02:26,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 17:02:58] 2025-10-11 21:02:26,583 | INFO     | ***************************************
[2025-10-11 17:02:58] 2025-10-11 21:02:26,583 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 17:02:58] 2025-10-11 21:02:26,583 | INFO     | ***************************************
[2025-10-11 17:02:58] 2025-10-11 21:02:26,583 | INFO     | 
[2025-10-11 17:02:58] 2025-10-11 21:02:26,588 | INFO     | architecture information:
[2025-10-11 17:02:58] 2025-10-11 21:02:26,588 | INFO     | executing command: cat /etc/os-release
[2025-10-11 17:02:58] 2025-10-11 21:02:26,607 | INFO     | cat /etc/os-release:
[2025-10-11 17:02:58] NAME="CentOS Linux"
[2025-10-11 17:02:58] VERSION="7 (Core)"
[2025-10-11 17:02:58] ID="centos"
[2025-10-11 17:02:58] ID_LIKE="rhel fedora"
[2025-10-11 17:02:58] VERSION_ID="7"
[2025-10-11 17:02:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 17:02:58] ANSI_COLOR="0;31"
[2025-10-11 17:02:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 17:02:58] HOME_URL="https://www.centos.org/"
[2025-10-11 17:02:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 17:02:58] 
[2025-10-11 17:02:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 17:02:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 17:02:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 17:02:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 17:02:58] 
[2025-10-11 17:02:58] 2025-10-11 21:02:26,608 | INFO     | ***************************************
[2025-10-11 17:02:58] 2025-10-11 21:02:27,110 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-11 17:02:58] 2025-10-11 21:02:27,131 | INFO     | sufficient remaining disk space (168755724288 B)
[2025-10-11 17:02:58] 2025-10-11 21:02:27,132 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 17:02:58] 2025-10-11 21:02:27,132 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 17:02:58] 2025-10-11 21:02:27,132 | INFO     | update_server=False
[2025-10-11 17:02:58] 2025-10-11 21:02:27,132 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 17:02:58] 2025-10-11 21:02:27,132 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 17:02:58] 2025-10-11 21:02:27,132 | INFO     | aborting loop
[2025-10-11 17:02:58] 2025-10-11 21:02:27,376 | INFO     | all data control threads have been joined
[2025-10-11 17:02:58] 2025-10-11 21:02:28,058 | INFO     | all job control threads have been joined
[2025-10-11 17:02:58] 2025-10-11 21:02:28,137 | INFO     | [job] retrieve thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:28,138 | INFO     | [job] job monitor thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:28,207 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 17:02:58] 2025-10-11 21:02:28,384 | INFO     | [data] control thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:28,637 | INFO     | all payload control threads have been joined
[2025-10-11 17:02:58] 2025-10-11 21:02:28,735 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:28,736 | INFO     | [payload] validate_post thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:28,831 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:29,063 | INFO     | [job] control thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:29,174 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:29,249 | INFO     | [job] validate thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:29,484 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:29,558 | INFO     | [data] copytool_in thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:29,642 | INFO     | [payload] control thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:29,676 | INFO     | [payload] failed_post thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:29,678 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 17:02:58] 2025-10-11 21:02:30,213 | INFO     | [data] copytool_out thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:30,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 17:02:58] 2025-10-11 21:02:30,684 | INFO     | [job] queue monitor thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:32,318 | INFO     | [monitor] cgroup control has ended
[2025-10-11 17:02:58] 2025-10-11 21:02:34,639 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 17:02:58] 2025-10-11 21:02:35,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140135065147200)>', '<ExcThread(monitor, started 140133969946368)>']
[2025-10-11 17:02:58] 2025-10-11 21:02:40,851 | INFO     | all workflow threads have been joined
[2025-10-11 17:02:58] 2025-10-11 21:02:40,851 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 17:02:58] 2025-10-11 21:02:40,851 | INFO     | traces error code: 0
[2025-10-11 17:02:58] 2025-10-11 21:02:40,852 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 17:02:58] 2025-10-11 21:02:57,650 | INFO     | PID=3560765 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 17:02:58] 2025-10-11 21:02:57,650 | INFO     | .. there are 86 such processes running
[2025-10-11 17:02:58] 2025-10-11 21:02:57,650 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 17:02:58] 2025-10-11 21:02:57,650 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 17:02:58] 2025-10-11 21:02:57,650 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 17:02:58] 2025-10-11 21:02:57,650 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 17:02:58] 2025-10-11 21:02:57,650 | INFO     | [monitor] control thread has ended
[2025-10-11 17:02:58] 2025-10-11 21:02:57,822 [wrapper] ==== pilot stdout END ====
[2025-10-11 17:02:58] 2025-10-11 21:02:57,829 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 17:02:58] 2025-10-11 21:02:57,831 [wrapper] pilotpid: 3560765
[2025-10-11 17:02:58] 2025-10-11 21:02:57,834 [wrapper] Pilot exit status: 0
[2025-10-11 17:02:58] 2025-10-11 21:02:57,854 [wrapper] pandaids: 6838293376
[2025-10-11 17:02:58] 2025-10-11 21:02:58,029 [wrapper] cleanup supervisor_pilot  187259 3560766
[2025-10-11 17:02:58] 2025-10-11 21:02:58,032 [wrapper] Test setup, not cleaning
[2025-10-11 17:02:58] 2025-10-11 21:02:58,063 [wrapper] apfmon messages muted
[2025-10-11 17:02:58] 2025-10-11 21:02:58,065 [wrapper] ==== wrapper stdout END ====
[2025-10-11 17:02:58] 2025-10-11 21:02:58,069 [wrapper] ==== wrapper stderr END ====
[2025-10-11 17:02:58]  *** Error codes and diagnostics ***
[2025-10-11 17:02:58]     "exeErrorCode": 0,
[2025-10-11 17:02:58]     "exeErrorDiag": "",
[2025-10-11 17:02:58]     "pilotErrorCode": 0,
[2025-10-11 17:02:58]     "pilotErrorDiag": "",
[2025-10-11 17:02:58]  *** Listing of results directory ***
[2025-10-11 17:02:58] total 409160
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 05:19 pilot3.tar.gz
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 05:28 queuedata.json
[2025-10-11 17:02:58] -rwx------. 1 boincer umatlas     36292 Oct 11 05:29 runpilot2-wrapper.sh
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas       100 Oct 11 15:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 17:02:58] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 15:38 run_atlas
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas       105 Oct 11 15:38 job.xml
[2025-10-11 17:02:58] -rw-r--r--. 2 boincer umatlas 219300223 Oct 11 15:38 EVNT.46676267._002218.pool.root.1
[2025-10-11 17:02:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 15:38 start_atlas.sh
[2025-10-11 17:02:58] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 15:38 shared
[2025-10-11 17:02:58] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 15:38 input.tar.gz
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas         0 Oct 11 15:38 boinc_lockfile
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 15:38 pandaJob.out
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas    975512 Oct 11 15:39 agis_schedconf.cvmfs.json
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas   1560580 Oct 11 15:39 agis_ddmendpoints.agis.ALL.json
[2025-10-11 17:02:58] drwx------. 5 boincer umatlas      4096 Oct 11 15:39 pilot3
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas      7161 Oct 11 17:00 init_data.xml
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas       529 Oct 11 17:01 boinc_task_state.xml
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas 193785071 Oct 11 17:01 HITS.46676269._055324.pool.root.1
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas        95 Oct 11 17:01 pilot_heartbeat.json
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas      1046 Oct 11 17:02 memory_monitor_summary.json
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas    336683 Oct 11 17:02 log.46676269._055324.job.log.tgz.1
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas      7796 Oct 11 17:02 heartbeat.json
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 17:02 boinc_mmap_file
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas        27 Oct 11 17:02 wrapper_checkpoint.txt
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas       823 Oct 11 17:02 pilotlog.txt
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas    662558 Oct 11 17:02 log.46676269._055324.job.log.1
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas       357 Oct 11 17:02 output.list
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas       620 Oct 11 17:02 runtime_log
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas   1013760 Oct 11 17:02 result.tar.gz
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas      8693 Oct 11 17:02 runtime_log.err
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas       654 Oct 11 17:02 IyyMDm45kR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm63fNDmLoMvQn.diag
[2025-10-11 17:02:58] -rw-r--r--. 1 boincer umatlas     22515 Oct 11 17:02 stderr.txt
[2025-10-11 17:02:58] HITS file was successfully produced:
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas 193785071 Oct 11 17:01 shared/HITS.pool.root.1
[2025-10-11 17:02:58]  *** Contents of shared directory: ***
[2025-10-11 17:02:58] total 404980
[2025-10-11 17:02:58] -rw-r--r--. 2 boincer umatlas 219300223 Oct 11 15:38 ATLAS.root_0
[2025-10-11 17:02:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 15:38 start_atlas.sh
[2025-10-11 17:02:58] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 15:38 input.tar.gz
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas 193785071 Oct 11 17:01 HITS.pool.root.1
[2025-10-11 17:02:58] -rw-------. 1 boincer umatlas   1013760 Oct 11 17:02 result.tar.gz
17:03:00 (3552838): run_atlas exited; CPU time 22811.648277
17:03:00 (3552838): called boinc_finish(0)

</stderr_txt>
]]>

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