Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:14:40 (2663306): wrapper (7.7.26015): starting
07:14:40 (2663306): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 07:14:40] Arguments: --nthreads 3
[2025-10-12 07:14:40] Threads: 3
[2025-10-12 07:14:40] Checking for CVMFS
[2025-10-12 07:14:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:14:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:14:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:14:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:14:41] 2.9.2.0 1544458 3944 71624 151608 1 57 30671681 36864000 0 130560 0 2928049 99.990 130812 975 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 07:14:41] CVMFS is ok
[2025-10-12 07:14:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:14:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:14:41] Further information can be found at the LHC@home message board.
[2025-10-12 07:14:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:14:41] Checking for apptainer binary...
[2025-10-12 07:14:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:14:41] Running /usr/bin/apptainer --version
[2025-10-12 07:14:41] apptainer version 1.4.1-1.1
[2025-10-12 07:14:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:14:41] atlasA223a
[2025-10-12 07:14:41] apptainer works
[2025-10-12 07:14:41] Set ATHENA_PROC_NUMBER=3
[2025-10-12 07:14:41] Set ATHENA_CORE_NUMBER=3
[2025-10-12 07:14:41] Starting ATLAS job with PandaID=6838634292
[2025-10-12 07:14:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 08:49:08]  *** The last 200 lines of the pilot log: ***
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | job 6838634292 has completed (purged errors)
[2025-10-12 08:49:08] 2025-10-12 06:48:17,526 | INFO     | overall cleanup function is called
[2025-10-12 08:49:08] 2025-10-12 06:48:18,532 | INFO     | --- collectZombieJob: --- 10, [2673489]
[2025-10-12 08:49:08] 2025-10-12 06:48:18,532 | INFO     | zombie collector waiting for pid 2673489
[2025-10-12 08:49:08] 2025-10-12 06:48:18,533 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 08:49:08] 2025-10-12 06:48:18,533 | INFO     | collected zombie processes
[2025-10-12 08:49:08] 2025-10-12 06:48:18,533 | INFO     | will attempt to kill all subprocesses of pid=2673489
[2025-10-12 08:49:08] 2025-10-12 06:48:18,572 | INFO     | process IDs to be killed: [2673489] (in reverse order)
[2025-10-12 08:49:08] 2025-10-12 06:48:18,597 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 08:49:08] 2025-10-12 06:48:18,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 08:49:08] 2025-10-12 06:48:18,598 | INFO     | did not find any defunct processes belonging to 2673489
[2025-10-12 08:49:08] 2025-10-12 06:48:18,599 | INFO     | did not find any defunct processes belonging to 2673489
[2025-10-12 08:49:08] 2025-10-12 06:48:18,599 | INFO     | ready for new job
[2025-10-12 08:49:08] 2025-10-12 06:48:18,599 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 08:49:08] 2025-10-12 06:48:18,600 | INFO     | ***************************************
[2025-10-12 08:49:08] 2025-10-12 06:48:18,600 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 08:49:08] 2025-10-12 06:48:18,600 | INFO     | ***************************************
[2025-10-12 08:49:08] 2025-10-12 06:48:18,600 | INFO     | 
[2025-10-12 08:49:08] 2025-10-12 06:48:18,600 | INFO     | architecture information:
[2025-10-12 08:49:08] 2025-10-12 06:48:18,600 | INFO     | executing command: cat /etc/os-release
[2025-10-12 08:49:08] 2025-10-12 06:48:18,610 | INFO     | cat /etc/os-release:
[2025-10-12 08:49:08] NAME="CentOS Linux"
[2025-10-12 08:49:08] VERSION="7 (Core)"
[2025-10-12 08:49:08] ID="centos"
[2025-10-12 08:49:08] ID_LIKE="rhel fedora"
[2025-10-12 08:49:08] VERSION_ID="7"
[2025-10-12 08:49:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 08:49:08] ANSI_COLOR="0;31"
[2025-10-12 08:49:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 08:49:08] HOME_URL="https://www.centos.org/"
[2025-10-12 08:49:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 08:49:08] 
[2025-10-12 08:49:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 08:49:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 08:49:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 08:49:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 08:49:08] 
[2025-10-12 08:49:08] 2025-10-12 06:48:18,610 | INFO     | ***************************************
[2025-10-12 08:49:08] 2025-10-12 06:48:19,113 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 08:49:08] 2025-10-12 06:48:19,126 | INFO     | sufficient remaining disk space (329350381568 B)
[2025-10-12 08:49:08] 2025-10-12 06:48:19,127 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 08:49:08] 2025-10-12 06:48:19,127 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 08:49:08] 2025-10-12 06:48:19,127 | INFO     | update_server=False
[2025-10-12 08:49:08] 2025-10-12 06:48:19,127 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 08:49:08] 2025-10-12 06:48:19,127 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 08:49:08] 2025-10-12 06:48:19,127 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 08:49:08] 2025-10-12 06:48:19,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 08:49:08] 2025-10-12 06:48:19,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:49:08] 2025-10-12 06:48:19,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 08:49:08] 2025-10-12 06:48:19,127 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:49:08] 2025-10-12 06:48:19,128 | INFO     | aborting loop
[2025-10-12 08:49:08] 2025-10-12 06:48:19,482 | INFO     | all payload control threads have been joined
[2025-10-12 08:49:08] 2025-10-12 06:48:19,652 | INFO     | all data control threads have been joined
[2025-10-12 08:49:08] 2025-10-12 06:48:20,132 | INFO     | [job] queue monitor thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:20,133 | INFO     | [job] retrieve thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:20,134 | INFO     | [job] job monitor thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:20,206 | INFO     | [job] validate thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:20,289 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 08:49:08] 2025-10-12 06:48:20,312 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 08:49:08] 2025-10-12 06:48:20,413 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:20,489 | INFO     | [payload] control thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:20,594 | INFO     | all job control threads have been joined
[2025-10-12 08:49:08] 2025-10-12 06:48:20,658 | INFO     | [data] control thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:21,171 | INFO     | [payload] failed_post thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:21,404 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:21,454 | INFO     | [data] copytool_in thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:21,537 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:21,600 | INFO     | [job] control thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:21,664 | INFO     | [payload] validate_post thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:22,296 | INFO     | [data] copytool_out thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:24,320 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:48:29,893 | INFO     | job.realtimelogging is not enabled
[2025-10-12 08:49:08] 2025-10-12 06:48:30,899 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 08:49:08] 2025-10-12 06:49:03,073 | INFO     | [monitor] cgroup control has ended
[2025-10-12 08:49:08] 2025-10-12 06:49:03,194 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140456403216192)>', '<ExcThread(monitor, started 140455689840384)>']
[2025-10-12 08:49:08] 2025-10-12 06:49:03,353 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 08:49:08] 2025-10-12 06:49:03,353 | INFO     | [monitor] control thread has ended
[2025-10-12 08:49:08] 2025-10-12 06:49:08,220 | INFO     | all workflow threads have been joined
[2025-10-12 08:49:08] 2025-10-12 06:49:08,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 08:49:08] 2025-10-12 06:49:08,221 | INFO     | traces error code: 0
[2025-10-12 08:49:08] 2025-10-12 06:49:08,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 08:49:08] 2025-10-12 06:49:08,271 [wrapper] ==== pilot stdout END ====
[2025-10-12 08:49:08] 2025-10-12 06:49:08,274 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 08:49:08] 2025-10-12 06:49:08,277 [wrapper] pilotpid: 2667039
[2025-10-12 08:49:08] 2025-10-12 06:49:08,279 [wrapper] Pilot exit status: 0
[2025-10-12 08:49:08] 2025-10-12 06:49:08,287 [wrapper] pandaids: 6838634292
[2025-10-12 08:49:08] 2025-10-12 06:49:08,305 [wrapper] cleanup supervisor_pilot 2685864 2667040
[2025-10-12 08:49:08] 2025-10-12 06:49:08,308 [wrapper] Test setup, not cleaning
[2025-10-12 08:49:08] 2025-10-12 06:49:08,311 [wrapper] apfmon messages muted
[2025-10-12 08:49:08] 2025-10-12 06:49:08,314 [wrapper] ==== wrapper stdout END ====
[2025-10-12 08:49:08] 2025-10-12 06:49:08,316 [wrapper] ==== wrapper stderr END ====
[2025-10-12 08:49:08]  *** Error codes and diagnostics ***
[2025-10-12 08:49:08]     "exeErrorCode": 0,
[2025-10-12 08:49:08]     "exeErrorDiag": "",
[2025-10-12 08:49:08]     "pilotErrorCode": 0,
[2025-10-12 08:49:08]     "pilotErrorDiag": "",
[2025-10-12 08:49:08]  *** Listing of results directory ***
[2025-10-12 08:49:08] total 410660
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc    557409 Oct 11 19:07 pilot3.tar.gz
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc      5112 Oct 11 19:18 queuedata.json
[2025-10-12 08:49:08] -rwx------ 1 boinc boinc     36292 Oct 11 19:18 runpilot2-wrapper.sh
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc       100 Oct 12 07:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 08:49:08] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 07:14 run_atlas
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc       105 Oct 12 07:14 job.xml
[2025-10-12 08:49:08] -rw-r--r-- 2 boinc boinc 220021700 Oct 12 07:14 EVNT.46676267._002475.pool.root.1
[2025-10-12 08:49:08] -rw-r--r-- 2 boinc boinc    569683 Oct 12 07:14 input.tar.gz
[2025-10-12 08:49:08] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:14 start_atlas.sh
[2025-10-12 08:49:08] drwxrwx--x 2 boinc boinc      4096 Oct 12 07:14 shared
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:14 boinc_setup_complete
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc      6200 Oct 12 07:14 init_data.xml
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:14 boinc_lockfile
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc      2550 Oct 12 07:14 pandaJob.out
[2025-10-12 08:49:08] -rw------- 1 boinc boinc    975512 Oct 12 07:14 agis_schedconf.cvmfs.json
[2025-10-12 08:49:08] -rw------- 1 boinc boinc   1560580 Oct 12 07:14 agis_ddmendpoints.agis.ALL.json
[2025-10-12 08:49:08] drwx------ 5 boinc boinc      4096 Oct 12 07:14 pilot3
[2025-10-12 08:49:08] -rw------- 1 boinc boinc        95 Oct 12 08:47 pilot_heartbeat.json
[2025-10-12 08:49:08] -rw------- 1 boinc boinc 194423053 Oct 12 08:47 HITS.46676269._061642.pool.root.1
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc       529 Oct 12 08:47 boinc_task_state.xml
[2025-10-12 08:49:08] -rw------- 1 boinc boinc      1019 Oct 12 08:48 memory_monitor_summary.json
[2025-10-12 08:49:08] -rw------- 1 boinc boinc    272562 Oct 12 08:48 log.46676269._061642.job.log.tgz.1
[2025-10-12 08:49:08] -rw------- 1 boinc boinc      7772 Oct 12 08:48 heartbeat.json
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc      8192 Oct 12 08:48 boinc_mmap_file
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc        27 Oct 12 08:48 wrapper_checkpoint.txt
[2025-10-12 08:49:08] -rw------- 1 boinc boinc      4628 Oct 12 08:49 pilotlog.txt
[2025-10-12 08:49:08] -rw------- 1 boinc boinc    817995 Oct 12 08:49 log.46676269._061642.job.log.1
[2025-10-12 08:49:08] -rw------- 1 boinc boinc       357 Oct 12 08:49 output.list
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc       620 Oct 12 08:49 runtime_log
[2025-10-12 08:49:08] -rw------- 1 boinc boinc   1105920 Oct 12 08:49 result.tar.gz
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc      8797 Oct 12 08:49 runtime_log.err
[2025-10-12 08:49:08] -rw------- 1 boinc boinc       662 Oct 12 08:49 n1uMDm8PsR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgISMDm8DOlOn.diag
[2025-10-12 08:49:08] -rw-r--r-- 1 boinc boinc     11850 Oct 12 08:49 stderr.txt
[2025-10-12 08:49:08] HITS file was successfully produced:
[2025-10-12 08:49:08] -rw------- 1 boinc boinc 194423053 Oct 12 08:47 shared/HITS.pool.root.1
[2025-10-12 08:49:08]  *** Contents of shared directory: ***
[2025-10-12 08:49:08] total 406400
[2025-10-12 08:49:08] -rw-r--r-- 2 boinc boinc 220021700 Oct 12 07:14 ATLAS.root_0
[2025-10-12 08:49:08] -rw-r--r-- 2 boinc boinc    569683 Oct 12 07:14 input.tar.gz
[2025-10-12 08:49:08] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:14 start_atlas.sh
[2025-10-12 08:49:08] -rw------- 1 boinc boinc 194423053 Oct 12 08:47 HITS.pool.root.1
[2025-10-12 08:49:08] -rw------- 1 boinc boinc   1105920 Oct 12 08:49 result.tar.gz
08:49:10 (2663306): run_atlas exited; CPU time 16065.370351
08:49:10 (2663306): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN