Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:09:37 (2881672): wrapper (7.7.26015): starting
17:09:37 (2881672): wrapper: running run_atlas (--nthreads 11)
[2025-10-11 17:09:37] Arguments: --nthreads 11
[2025-10-11 17:09:37] Threads: 11
[2025-10-11 17:09:37] Checking for CVMFS
[2025-10-11 17:09:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 17:09:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 17:09:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 17:09:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 17:09:37] 2.13.2.0 4120630 128343 292480 151595 3 475 22982304 32935936 21127 16776704 0 92868699 99.673 82917640 29924 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 17:09:37] CVMFS is ok
[2025-10-11 17:09:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 17:09:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 17:09:37] Further information can be found at the LHC@home message board.
[2025-10-11 17:09:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 17:09:37] Checking for apptainer binary...
[2025-10-11 17:09:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 17:09:37] Running /usr/bin/apptainer --version
[2025-10-11 17:09:37] apptainer version 1.4.3-1.el9
[2025-10-11 17:09:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 17:09:38] c-5-4.aglt2.org
[2025-10-11 17:09:38] apptainer works
[2025-10-11 17:09:38] Set ATHENA_PROC_NUMBER=11
[2025-10-11 17:09:38] Set ATHENA_CORE_NUMBER=11
[2025-10-11 17:09:38] Starting ATLAS job with PandaID=6838452499
[2025-10-11 17:09:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 18:36:02]  *** The last 200 lines of the pilot log: ***
[2025-10-11 18:36:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 18:36:02]  replicas=None
[2025-10-11 18:36:02]  scope=mc23_13p6TeV
[2025-10-11 18:36:02]  status=None
[2025-10-11 18:36:02]  status_code=0
[2025-10-11 18:36:02]  storage_token=
[2025-10-11 18:36:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838452499/log.46676269._058501.job.log.tgz.1
[2025-10-11 18:36:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9b/2b/log.46676269._058501.job.log.tgz.1
[2025-10-11 18:36:02]  workdir=None
[2025-10-11 18:36:02] ]
[2025-10-11 18:36:02] 2025-10-11 22:35:05,801 | INFO     | transferring file log.46676269._058501.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838452499/log.46676269._058501.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 18:36:02] 2025-10-11 22:35:05,802 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838452499/log.46676269._058501.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._058501.job
[2025-10-11 18:36:02] 2025-10-11 22:35:05,819 | INFO     | adding to output.list: log.46676269._058501.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9b/2b/log.46676269._058501.job.log.tg
[2025-10-11 18:36:02] 2025-10-11 22:35:05,820 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 18:36:02] 2025-10-11 22:35:05,820 | INFO     | summary of transferred files:
[2025-10-11 18:36:02] 2025-10-11 22:35:05,820 | INFO     |  -- lfn=log.46676269._058501.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 18:36:02] 2025-10-11 22:35:05,821 | INFO     | stage-out finished correctly
[2025-10-11 18:36:02] 2025-10-11 22:35:07,316 | INFO     | time since job start (5119s) is within the limit (172800.0s)
[2025-10-11 18:36:02] 2025-10-11 22:35:07,374 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 18:36:02] 2025-10-11 22:35:08,055 | INFO     | job 6838452499 has state=finished
[2025-10-11 18:36:02] 2025-10-11 22:35:08,056 | INFO     | preparing for final server update for job 6838452499 in state='finished'
[2025-10-11 18:36:02] 2025-10-11 22:35:08,118 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-11 18:36:02] 2025-10-11 22:35:08,118 | INFO     | this job has now completed (state=finished)
[2025-10-11 18:36:02] 2025-10-11 22:35:08,118 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 18:36:02] 2025-10-11 22:35:08,119 | INFO     | log transfer has been attempted: DONE
[2025-10-11 18:36:02] 2025-10-11 22:35:08,119 | INFO     | job 6838452499 has finished - writing final server update
[2025-10-11 18:36:02] 2025-10-11 22:35:08,119 | INFO     | total number of processed events: 400 (read)
[2025-10-11 18:36:02] 2025-10-11 22:35:08,120 | INFO     | executing command: lscpu
[2025-10-11 18:36:02] 2025-10-11 22:35:08,173 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 18:36:02] 2025-10-11 22:35:09,322 | INFO     | time since job start (5121s) is within the limit (172800.0s)
[2025-10-11 18:36:02] 2025-10-11 22:35:11,328 | INFO     | time since job start (5123s) is within the limit (172800.0s)
[2025-10-11 18:36:02] 2025-10-11 22:35:11,447 | WARNING  | process 2899651 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 18:36:02] 2025-10-11 22:35:11,447 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838452499/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 18:36:02] 2025-10-11 22:35:11,761 | INFO     | number of running child processes to parent process 2899651: 1
[2025-10-11 18:36:02] 2025-10-11 22:35:11,761 | INFO     | maximum number of monitored processes: 6
[2025-10-11 18:36:02] 2025-10-11 22:35:12,117 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 18:36:02] 2025-10-11 22:35:12,135 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2739.9760999999994
[2025-10-11 18:36:02] 2025-10-11 22:35:12,154 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838452499/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 18:36:02] 2025-10-11 22:35:12,155 | INFO     | extracted standard info from prmon json
[2025-10-11 18:36:02] 2025-10-11 22:35:12,155 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 18:36:02] 2025-10-11 22:35:12,155 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 18:36:02] 2025-10-11 22:35:12,155 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 18:36:02] 2025-10-11 22:35:12,155 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 18:36:02] 2025-10-11 22:35:12,157 | INFO     | fitting pss+swap vs Time
[2025-10-11 18:36:02] 2025-10-11 22:35:12,158 | INFO     | sum of square deviations: 141542204.9870133
[2025-10-11 18:36:02] 2025-10-11 22:35:12,158 | INFO     | sum of deviations: -498213475.68831164
[2025-10-11 18:36:02] 2025-10-11 22:35:12,158 | INFO     | mean x: 1760219637.012987
[2025-10-11 18:36:02] 2025-10-11 22:35:12,159 | INFO     | mean y: 2301176.688311688
[2025-10-11 18:36:02] 2025-10-11 22:35:12,159 | INFO     | -- intersect: 6198086691.062072
[2025-10-11 18:36:02] 2025-10-11 22:35:12,159 | INFO     | intersect: 6198086691.062072
[2025-10-11 18:36:02] 2025-10-11 22:35:12,159 | INFO     | chi2: 0.04642971131657806
[2025-10-11 18:36:02] 2025-10-11 22:35:12,159 | INFO     | -- intersect: 6198086691.062072
[2025-10-11 18:36:02] 2025-10-11 22:35:12,159 | INFO     | current memory leak: -3.52 B/s (using 77 data points, chi2=0.05)
[2025-10-11 18:36:02] 2025-10-11 22:35:12,160 | INFO     | could have reported an average CPU frequency of 2679 MHz (6 samples)
[2025-10-11 18:36:02] 2025-10-11 22:35:12,160 | INFO     | ..............................
[2025-10-11 18:36:02] 2025-10-11 22:35:12,160 | INFO     | . Timing measurements:
[2025-10-11 18:36:02] 2025-10-11 22:35:12,160 | INFO     | . get job = 0 s
[2025-10-11 18:36:02] 2025-10-11 22:35:12,160 | INFO     | . initial setup = 2 s
[2025-10-11 18:36:02] 2025-10-11 22:35:12,160 | INFO     | . payload setup = 5 s
[2025-10-11 18:36:02] 2025-10-11 22:35:12,160 | INFO     | . stage-in = 0 s
[2025-10-11 18:36:02] 2025-10-11 22:35:12,160 | INFO     | . payload execution = 5091 s
[2025-10-11 18:36:02] 2025-10-11 22:35:12,161 | INFO     | . stage-out = 0 s
[2025-10-11 18:36:02] 2025-10-11 22:35:12,161 | INFO     | . log creation = 0 s
[2025-10-11 18:36:02] 2025-10-11 22:35:12,161 | INFO     | ..............................
[2025-10-11 18:36:02] 2025-10-11 22:35:12,297 | INFO     | 
[2025-10-11 18:36:02] 2025-10-11 22:35:12,297 | INFO     | job summary report
[2025-10-11 18:36:02] 2025-10-11 22:35:12,297 | INFO     | --------------------------------------------------
[2025-10-11 18:36:02] 2025-10-11 22:35:12,297 | INFO     | PanDA job id: 6838452499
[2025-10-11 18:36:02] 2025-10-11 22:35:12,297 | INFO     | task id: 46676269
[2025-10-11 18:36:02] 2025-10-11 22:35:12,297 | INFO     | errors: (none)
[2025-10-11 18:36:02] 2025-10-11 22:35:12,297 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 18:36:02] 2025-10-11 22:35:12,298 | INFO     | pilot state: finished 
[2025-10-11 18:36:02] 2025-10-11 22:35:12,298 | INFO     | transexitcode: 0
[2025-10-11 18:36:02] 2025-10-11 22:35:12,298 | INFO     | exeerrorcode: 0
[2025-10-11 18:36:02] 2025-10-11 22:35:12,298 | INFO     | exeerrordiag: 
[2025-10-11 18:36:02] 2025-10-11 22:35:12,298 | INFO     | exitcode: 0
[2025-10-11 18:36:02] 2025-10-11 22:35:12,298 | INFO     | exitmsg: OK
[2025-10-11 18:36:02] 2025-10-11 22:35:12,298 | INFO     | cpuconsumptiontime: 45673 s
[2025-10-11 18:36:02] 2025-10-11 22:35:12,298 | INFO     | nevents: 400
[2025-10-11 18:36:02] 2025-10-11 22:35:12,298 | INFO     | neventsw: 0
[2025-10-11 18:36:02] 2025-10-11 22:35:12,298 | INFO     | pid: 2899651
[2025-10-11 18:36:02] 2025-10-11 22:35:12,299 | INFO     | pgrp: 2899651
[2025-10-11 18:36:02] 2025-10-11 22:35:12,299 | INFO     | corecount: 11
[2025-10-11 18:36:02] 2025-10-11 22:35:12,299 | INFO     | event service: False
[2025-10-11 18:36:02] 2025-10-11 22:35:12,299 | INFO     | sizes: {0: 2348029, 1: 2348885, 5: 2349147, 12: 2349203, 5100: 2375618, 5102: 2384616, 5103: 2384800, 5108: 2384994}
[2025-10-11 18:36:02] 2025-10-11 22:35:12,299 | INFO     | --------------------------------------------------
[2025-10-11 18:36:02] 2025-10-11 22:35:12,299 | INFO     | 
[2025-10-11 18:36:02] 2025-10-11 22:35:12,299 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 18:36:02] 2025-10-11 22:35:12,318 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,318 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,318 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,318 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,318 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,318 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,319 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,320 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 18:36:02] 2025-10-11 22:35:12,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,320 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 18:36:02] 2025-10-11 22:35:12,320 | INFO     | job 6838452499 has completed (purged errors)
[2025-10-11 18:36:02] 2025-10-11 22:35:12,320 | INFO     | overall cleanup function is called
[2025-10-11 18:36:02] 2025-10-11 22:35:13,328 | INFO     | --- collectZombieJob: --- 10, [2899651]
[2025-10-11 18:36:02] 2025-10-11 22:35:13,329 | INFO     | zombie collector waiting for pid 2899651
[2025-10-11 18:36:02] 2025-10-11 22:35:13,329 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 18:36:02] 2025-10-11 22:35:13,329 | INFO     | collected zombie processes
[2025-10-11 18:36:02] 2025-10-11 22:35:13,329 | INFO     | will attempt to kill all subprocesses of pid=2899651
[2025-10-11 18:36:02] 2025-10-11 22:35:13,692 | INFO     | process IDs to be killed: [2899651] (in reverse order)
[2025-10-11 18:36:02] 2025-10-11 22:35:13,809 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 18:36:02] 2025-10-11 22:35:13,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 18:36:02] 2025-10-11 22:35:13,826 | INFO     | did not find any defunct processes belonging to 2899651
[2025-10-11 18:36:02] 2025-10-11 22:35:13,842 | INFO     | did not find any defunct processes belonging to 2899651
[2025-10-11 18:36:02] 2025-10-11 22:35:13,842 | INFO     | ready for new job
[2025-10-11 18:36:02] 2025-10-11 22:35:13,842 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 18:36:02] 2025-10-11 22:35:13,844 | INFO     | ***************************************
[2025-10-11 18:36:02] 2025-10-11 22:35:13,844 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 18:36:02] 2025-10-11 22:35:13,845 | INFO     | ***************************************
[2025-10-11 18:36:02] 2025-10-11 22:35:13,845 | INFO     | 
[2025-10-11 18:36:02] 2025-10-11 22:35:13,858 | INFO     | architecture information:
[2025-10-11 18:36:02] 2025-10-11 22:35:13,859 | INFO     | executing command: cat /etc/os-release
[2025-10-11 18:36:02] 2025-10-11 22:35:13,879 | INFO     | cat /etc/os-release:
[2025-10-11 18:36:02] NAME="CentOS Linux"
[2025-10-11 18:36:02] VERSION="7 (Core)"
[2025-10-11 18:36:02] ID="centos"
[2025-10-11 18:36:02] ID_LIKE="rhel fedora"
[2025-10-11 18:36:02] VERSION_ID="7"
[2025-10-11 18:36:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 18:36:02] ANSI_COLOR="0;31"
[2025-10-11 18:36:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 18:36:02] HOME_URL="https://www.centos.org/"
[2025-10-11 18:36:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 18:36:02] 
[2025-10-11 18:36:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 18:36:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 18:36:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 18:36:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 18:36:02] 
[2025-10-11 18:36:02] 2025-10-11 22:35:13,881 | INFO     | ***************************************
[2025-10-11 18:36:02] 2025-10-11 22:35:14,384 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 18:36:02] 2025-10-11 22:35:14,401 | INFO     | sufficient remaining disk space (75861327872 B)
[2025-10-11 18:36:02] 2025-10-11 22:35:14,401 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 18:36:02] 2025-10-11 22:35:14,401 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 18:36:02] 2025-10-11 22:35:14,402 | INFO     | update_server=False
[2025-10-11 18:36:02] 2025-10-11 22:35:14,402 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 18:36:02] 2025-10-11 22:35:14,402 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 18:36:02] 2025-10-11 22:35:14,402 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 18:36:02] 2025-10-11 22:35:14,583 | INFO     | all data control threads have been joined
[2025-10-11 18:36:02] 2025-10-11 22:35:14,822 | INFO     | all payload control threads have been joined
[2025-10-11 18:36:02] 2025-10-11 22:35:15,270 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:36:02] 2025-10-11 22:35:15,270 | INFO     | aborting loop
[2025-10-11 18:36:02] 2025-10-11 22:35:15,321 | INFO     | all job control threads have been joined
[2025-10-11 18:36:02] 2025-10-11 22:35:15,407 | INFO     | [job] retrieve thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:15,589 | INFO     | [data] control thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:15,827 | INFO     | [payload] control thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:15,913 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:15,958 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:16,268 | INFO     | [payload] failed_post thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:16,275 | INFO     | [job] job monitor thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:16,326 | INFO     | [job] control thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:16,408 | INFO     | [data] copytool_out thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:16,681 | INFO     | [data] copytool_in thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:16,681 | INFO     | [job] validate thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:16,759 | INFO     | [payload] validate_post thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:16,792 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:17,279 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:36:02] 2025-10-11 22:35:18,285 | INFO     | [job] queue monitor thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:18,408 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:25,098 | INFO     | job.realtimelogging is not enabled
[2025-10-11 18:36:02] 2025-10-11 22:35:26,100 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 18:36:02] 2025-10-11 22:35:44,870 | INFO     | PID=2885388 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 18:36:02] 2025-10-11 22:35:44,871 | INFO     | .. there are 31 such processes running
[2025-10-11 18:36:02] 2025-10-11 22:35:44,872 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 18:36:02] 2025-10-11 22:35:44,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 18:36:02] 2025-10-11 22:35:44,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 18:36:02] 2025-10-11 22:35:56,782 | INFO     | [monitor] cgroup control has ended
[2025-10-11 18:36:02] 2025-10-11 22:35:57,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918693349184)>', '<ExcThread(monitor, started 139918189770496)>']
[2025-10-11 18:36:02] 2025-10-11 22:35:57,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 18:36:02] 2025-10-11 22:35:57,939 | INFO     | [monitor] control thread has ended
[2025-10-11 18:36:02] 2025-10-11 22:36:02,119 | INFO     | all workflow threads have been joined
[2025-10-11 18:36:02] 2025-10-11 22:36:02,120 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 18:36:02] 2025-10-11 22:36:02,120 | INFO     | traces error code: 0
[2025-10-11 18:36:02] 2025-10-11 22:36:02,121 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 18:36:02] 2025-10-11 22:36:02,272 [wrapper] ==== pilot stdout END ====
[2025-10-11 18:36:02] 2025-10-11 22:36:02,275 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 18:36:02] 2025-10-11 22:36:02,277 [wrapper] pilotpid: 2885388
[2025-10-11 18:36:02] 2025-10-11 22:36:02,278 [wrapper] Pilot exit status: 0
[2025-10-11 18:36:02] 2025-10-11 22:36:02,287 [wrapper] pandaids: 6838452499
[2025-10-11 18:36:02] 2025-10-11 22:36:02,334 [wrapper] cleanup supervisor_pilot 3149404 2885389
[2025-10-11 18:36:02] 2025-10-11 22:36:02,336 [wrapper] Test setup, not cleaning
[2025-10-11 18:36:02] 2025-10-11 22:36:02,338 [wrapper] apfmon messages muted
[2025-10-11 18:36:02] 2025-10-11 22:36:02,340 [wrapper] ==== wrapper stdout END ====
[2025-10-11 18:36:02] 2025-10-11 22:36:02,342 [wrapper] ==== wrapper stderr END ====
[2025-10-11 18:36:02]  *** Error codes and diagnostics ***
[2025-10-11 18:36:02]     "exeErrorCode": 0,
[2025-10-11 18:36:02]     "exeErrorDiag": "",
[2025-10-11 18:36:02]     "pilotErrorCode": 0,
[2025-10-11 18:36:02]     "pilotErrorDiag": "",
[2025-10-11 18:36:02]  *** Listing of results directory ***
[2025-10-11 18:36:02] total 411708
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 09:40 pilot3.tar.gz
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 09:43 queuedata.json
[2025-10-11 18:36:02] -rwx------. 1 boincer umatlas     36292 Oct 11 09:43 runpilot2-wrapper.sh
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas       100 Oct 11 17:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 18:36:02] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 17:09 run_atlas
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas       105 Oct 11 17:09 job.xml
[2025-10-11 18:36:02] -rw-r--r--. 2 boincer umatlas 224063787 Oct 11 17:09 EVNT.46676267._002346.pool.root.1
[2025-10-11 18:36:02] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 17:09 start_atlas.sh
[2025-10-11 18:36:02] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 17:09 shared
[2025-10-11 18:36:02] -rw-r--r--. 2 boincer umatlas    569677 Oct 11 17:09 input.tar.gz
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas         0 Oct 11 17:09 boinc_lockfile
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 17:09 pandaJob.out
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas    975528 Oct 11 17:09 agis_schedconf.cvmfs.json
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas   1560580 Oct 11 17:09 agis_ddmendpoints.agis.ALL.json
[2025-10-11 18:36:02] drwx------. 5 boincer umatlas      4096 Oct 11 17:09 pilot3
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas      6654 Oct 11 18:30 init_data.xml
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas 191407472 Oct 11 18:34 HITS.46676269._058501.pool.root.1
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas       529 Oct 11 18:34 boinc_task_state.xml
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas      1041 Oct 11 18:35 memory_monitor_summary.json
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas    371148 Oct 11 18:35 log.46676269._058501.job.log.tgz.1
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas      7816 Oct 11 18:35 heartbeat.json
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas        95 Oct 11 18:35 pilot_heartbeat.json
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 18:36 boinc_mmap_file
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas      4896 Oct 11 18:36 pilotlog.txt
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas    735340 Oct 11 18:36 log.46676269._058501.job.log.1
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas       357 Oct 11 18:36 output.list
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas       620 Oct 11 18:36 runtime_log
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas   1126400 Oct 11 18:36 result.tar.gz
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas      8690 Oct 11 18:36 runtime_log.err
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas       650 Oct 11 18:36 qEmNDmu3oR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDXgNDm4rBIHo.diag
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas        27 Oct 11 18:36 wrapper_checkpoint.txt
[2025-10-11 18:36:02] -rw-r--r--. 1 boincer umatlas     21877 Oct 11 18:36 stderr.txt
[2025-10-11 18:36:02] HITS file was successfully produced:
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas 191407472 Oct 11 18:34 shared/HITS.pool.root.1
[2025-10-11 18:36:02]  *** Contents of shared directory: ***
[2025-10-11 18:36:02] total 407420
[2025-10-11 18:36:02] -rw-r--r--. 2 boincer umatlas 224063787 Oct 11 17:09 ATLAS.root_0
[2025-10-11 18:36:02] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 17:09 start_atlas.sh
[2025-10-11 18:36:02] -rw-r--r--. 2 boincer umatlas    569677 Oct 11 17:09 input.tar.gz
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas 191407472 Oct 11 18:34 HITS.pool.root.1
[2025-10-11 18:36:02] -rw-------. 1 boincer umatlas   1126400 Oct 11 18:36 result.tar.gz
18:36:04 (2881672): run_atlas exited; CPU time 45795.905160
18:36:04 (2881672): called boinc_finish(0)

</stderr_txt>
]]>

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