Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:38:16 (934429): wrapper (7.7.26015): starting
15:38:16 (934429): wrapper: running run_atlas (--nthreads 10)
[2025-10-11 15:38:16] Arguments: --nthreads 10
[2025-10-11 15:38:16] Threads: 10
[2025-10-11 15:38:16] Checking for CVMFS
[2025-10-11 15:38:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 15:38:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 15:38:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 15:38:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 15:38:17] 2.13.2.0 100689 137103 664372 151594 1 606 22565764 32935936 73248 16776704 0 600811036 99.664 542343716 19046 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 15:38:17] CVMFS is ok
[2025-10-11 15:38:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 15:38:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 15:38:17] Further information can be found at the LHC@home message board.
[2025-10-11 15:38:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 15:38:17] Checking for apptainer binary...
[2025-10-11 15:38:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 15:38:17] Running /usr/bin/apptainer --version
[2025-10-11 15:38:17] apptainer version 1.4.3-1.el9
[2025-10-11 15:38:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 15:38:17] c7-2-38.aglt2.org
[2025-10-11 15:38:17] apptainer works
[2025-10-11 15:38:17] Set ATHENA_PROC_NUMBER=10
[2025-10-11 15:38:17] Set ATHENA_CORE_NUMBER=10
[2025-10-11 15:38:17] Starting ATLAS job with PandaID=6835977232
[2025-10-11 15:38:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:47:26 (1972376): wrapper (7.7.26015): starting
16:47:26 (1972376): wrapper: running run_atlas (--nthreads 10)
[2025-10-11 16:47:26] Arguments: --nthreads 10
[2025-10-11 16:47:26] Threads: 10
[2025-10-11 16:47:26] This job has been restarted, cleaning up previous attempt
[2025-10-11 16:47:27] Checking for CVMFS
[2025-10-11 16:47:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 16:47:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 16:47:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 16:47:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 16:47:28] 2.13.2.0 100689 137172 616180 151595 0 736 24890636 32935936 68517 16776704 0 602302501 99.664 543178610 19052 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 16:47:28] CVMFS is ok
[2025-10-11 16:47:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:47:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 16:47:28] Further information can be found at the LHC@home message board.
[2025-10-11 16:47:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:47:28] Checking for apptainer binary...
[2025-10-11 16:47:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 16:47:28] Running /usr/bin/apptainer --version
[2025-10-11 16:47:28] apptainer version 1.4.3-1.el9
[2025-10-11 16:47:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:47:28] c7-2-38.aglt2.org
[2025-10-11 16:47:28] apptainer works
[2025-10-11 16:47:28] Set ATHENA_PROC_NUMBER=10
[2025-10-11 16:47:28] Set ATHENA_CORE_NUMBER=10
[2025-10-11 16:47:28] Starting ATLAS job with PandaID=6835977232
[2025-10-11 16:47:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 20:09:18]  *** The last 200 lines of the pilot log: ***
[2025-10-11 20:09:18] 2025-10-12 00:08:25,921 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 20:09:18] 2025-10-12 00:08:25,924 | INFO     | fitting pss+swap vs Time
[2025-10-11 20:09:18] 2025-10-12 00:08:25,924 | INFO     | sum of square deviations: 2334777818.137765
[2025-10-11 20:09:18] 2025-10-12 00:08:25,925 | INFO     | sum of deviations: 35265193611.03059
[2025-10-11 20:09:18] 2025-10-12 00:08:25,925 | INFO     | mean x: 1760221681.5663266
[2025-10-11 20:09:18] 2025-10-12 00:08:25,925 | INFO     | mean y: 2192245.4591836734
[2025-10-11 20:09:18] 2025-10-12 00:08:25,925 | INFO     | -- intersect: -26584730894.097385
[2025-10-11 20:09:18] 2025-10-12 00:08:25,926 | INFO     | intersect: -26584730894.097385
[2025-10-11 20:09:18] 2025-10-12 00:08:25,926 | INFO     | chi2: 2.7447857563438167
[2025-10-11 20:09:18] 2025-10-12 00:08:25,926 | INFO     | sum of square deviations: 2160620378.1151786
[2025-10-11 20:09:18] 2025-10-12 00:08:25,941 | INFO     | sum of deviations: 46605765991.08901
[2025-10-11 20:09:18] 2025-10-12 00:08:25,941 | INFO     | mean x: 1760221529.0680628
[2025-10-11 20:09:18] 2025-10-12 00:08:25,942 | INFO     | mean y: 2201950.9162303666
[2025-10-11 20:09:18] 2025-10-12 00:08:25,942 | INFO     | -- intersect: -37966741370.71795
[2025-10-11 20:09:18] 2025-10-12 00:08:25,942 | INFO     | intersect: -37966741370.71795
[2025-10-11 20:09:18] 2025-10-12 00:08:25,942 | INFO     | chi2: 1.9311308474483717
[2025-10-11 20:09:18] 2025-10-12 00:08:25,942 | INFO     | current chi2=1.9311308474483717 (change=29.643658235070102 %)
[2025-10-11 20:09:18] 2025-10-12 00:08:25,942 | INFO     | sum of square deviations: 1995335173.7258046
[2025-10-11 20:09:18] 2025-10-12 00:08:25,943 | INFO     | sum of deviations: 45369900222.30645
[2025-10-11 20:09:18] 2025-10-12 00:08:25,943 | INFO     | mean x: 1760221376.564516
[2025-10-11 20:09:18] 2025-10-12 00:08:25,943 | INFO     | mean y: 2200819.3494623657
[2025-10-11 20:09:18] 2025-10-12 00:08:25,943 | INFO     | -- intersect: -40021685530.92312
[2025-10-11 20:09:18] 2025-10-12 00:08:25,943 | INFO     | intersect: -40021685530.92312
[2025-10-11 20:09:18] 2025-10-12 00:08:25,943 | INFO     | chi2: 1.928881814699747
[2025-10-11 20:09:18] 2025-10-12 00:08:25,943 | INFO     | current chi2=1.928881814699747 (change=0.11646195552188102 %)
[2025-10-11 20:09:18] 2025-10-12 00:08:25,943 | INFO     | right removable region: 185
[2025-10-11 20:09:18] 2025-10-12 00:08:25,944 | INFO     | sum of square deviations: 2160612448.1151786
[2025-10-11 20:09:18] 2025-10-12 00:08:25,944 | INFO     | sum of deviations: 320660941.6492176
[2025-10-11 20:09:18] 2025-10-12 00:08:25,945 | INFO     | mean x: 1760221834.0680628
[2025-10-11 20:09:18] 2025-10-12 00:08:25,945 | INFO     | mean y: 2222629.5654450264
[2025-10-11 20:09:18] 2025-10-12 00:08:25,945 | INFO     | -- intersect: -259015516.73708373
[2025-10-11 20:09:18] 2025-10-12 00:08:25,945 | INFO     | intersect: -259015516.73708373
[2025-10-11 20:09:18] 2025-10-12 00:08:25,968 | INFO     | chi2: 0.9344148814687142
[2025-10-11 20:09:18] 2025-10-12 00:08:25,968 | INFO     | current chi2=0.9344148814687142 (change=65.95672797743607 %)
[2025-10-11 20:09:18] 2025-10-12 00:08:25,968 | INFO     | sum of square deviations: 1995330965.5913994
[2025-10-11 20:09:18] 2025-10-12 00:08:25,969 | INFO     | sum of deviations: -3467470634.698927
[2025-10-11 20:09:18] 2025-10-12 00:08:25,969 | INFO     | mean x: 1760221986.5698924
[2025-10-11 20:09:18] 2025-10-12 00:08:25,969 | INFO     | mean y: 2226102.553763441
[2025-10-11 20:09:18] 2025-10-12 00:08:25,969 | INFO     | -- intersect: 3061126181.906503
[2025-10-11 20:09:18] 2025-10-12 00:08:25,969 | INFO     | intersect: 3061126181.906503
[2025-10-11 20:09:18] 2025-10-12 00:08:25,970 | INFO     | chi2: 0.9105854091710719
[2025-10-11 20:09:18] 2025-10-12 00:08:25,970 | INFO     | current chi2=0.9105854091710719 (change=2.5502025674277715 %)
[2025-10-11 20:09:18] 2025-10-12 00:08:25,970 | INFO     | left removable region: 20
[2025-10-11 20:09:18] 2025-10-12 00:08:25,970 | INFO     | sum of square deviations: 1392919273.1272683
[2025-10-11 20:09:18] 2025-10-12 00:08:25,971 | INFO     | sum of deviations: 8894509695.58182
[2025-10-11 20:09:18] 2025-10-12 00:08:25,971 | INFO     | mean x: 1760221956.0727272
[2025-10-11 20:09:18] 2025-10-12 00:08:25,971 | INFO     | mean y: 2237013.9515151517
[2025-10-11 20:09:18] 2025-10-12 00:08:25,971 | INFO     | -- intersect: -11237690207.038542
[2025-10-11 20:09:18] 2025-10-12 00:08:25,971 | INFO     | intersect: -11237690207.038542
[2025-10-11 20:09:18] 2025-10-12 00:08:25,971 | INFO     | chi2: 0.05994176669722367
[2025-10-11 20:09:18] 2025-10-12 00:08:25,971 | INFO     | -- intersect: -11237690207.038542
[2025-10-11 20:09:18] 2025-10-12 00:08:25,971 | INFO     | current memory leak: 6.39 B/s (using 165 data points, chi2=0.06)
[2025-10-11 20:09:18] 2025-10-12 00:08:25,972 | INFO     | could have reported an average CPU frequency of 3518 MHz (10 samples)
[2025-10-11 20:09:18] 2025-10-12 00:08:25,972 | INFO     | ..............................
[2025-10-11 20:09:18] 2025-10-12 00:08:25,995 | INFO     | . Timing measurements:
[2025-10-11 20:09:18] 2025-10-12 00:08:25,995 | INFO     | . get job = 0 s
[2025-10-11 20:09:18] 2025-10-12 00:08:25,995 | INFO     | . initial setup = 1 s
[2025-10-11 20:09:18] 2025-10-12 00:08:25,995 | INFO     | . payload setup = 13 s
[2025-10-11 20:09:18] 2025-10-12 00:08:25,995 | INFO     | . stage-in = 0 s
[2025-10-11 20:09:18] 2025-10-12 00:08:25,995 | INFO     | . payload execution = 11952 s
[2025-10-11 20:09:18] 2025-10-12 00:08:25,995 | INFO     | . stage-out = 5 s
[2025-10-11 20:09:18] 2025-10-12 00:08:25,995 | INFO     | . log creation = 0 s
[2025-10-11 20:09:18] 2025-10-12 00:08:25,995 | INFO     | ..............................
[2025-10-11 20:09:18] 2025-10-12 00:08:26,357 | INFO     | 
[2025-10-11 20:09:18] 2025-10-12 00:08:26,357 | INFO     | job summary report
[2025-10-11 20:09:18] 2025-10-12 00:08:26,357 | INFO     | --------------------------------------------------
[2025-10-11 20:09:18] 2025-10-12 00:08:26,357 | INFO     | PanDA job id: 6835977232
[2025-10-11 20:09:18] 2025-10-12 00:08:26,357 | INFO     | task id: 46676269
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | errors: (none)
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | pilot state: finished 
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | transexitcode: 0
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | exeerrorcode: 0
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | exeerrordiag: 
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | exitcode: 0
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | exitmsg: OK
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | cpuconsumptiontime: 28477 s
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | nevents: 400
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | neventsw: 0
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | pid: 2048959
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | pgrp: 2048959
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | corecount: 10
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | event service: False
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | sizes: {0: 2348852, 11: 2348852, 12: 2349142, 22: 2349170, 11970: 2378492, 11976: 2387490, 11980: 2387674, 12003: 2387868}
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | --------------------------------------------------
[2025-10-11 20:09:18] 2025-10-12 00:08:26,358 | INFO     | 
[2025-10-11 20:09:18] 2025-10-12 00:08:26,359 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 20:09:18] 2025-10-12 00:08:26,507 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,507 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,507 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,507 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,507 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,507 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,507 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,507 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,507 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | job 6835977232 has completed (purged errors)
[2025-10-11 20:09:18] 2025-10-12 00:08:26,508 | INFO     | overall cleanup function is called
[2025-10-11 20:09:18] 2025-10-12 00:08:27,540 | INFO     | --- collectZombieJob: --- 10, [2048959]
[2025-10-11 20:09:18] 2025-10-12 00:08:27,540 | INFO     | zombie collector waiting for pid 2048959
[2025-10-11 20:09:18] 2025-10-12 00:08:27,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 20:09:18] 2025-10-12 00:08:27,540 | INFO     | collected zombie processes
[2025-10-11 20:09:18] 2025-10-12 00:08:27,540 | INFO     | will attempt to kill all subprocesses of pid=2048959
[2025-10-11 20:09:18] 2025-10-12 00:08:30,498 | INFO     | PID=1999440 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 20:09:18] 2025-10-12 00:08:30,498 | INFO     | .. there are 96 such processes running
[2025-10-11 20:09:18] 2025-10-12 00:08:30,604 | INFO     | process IDs to be killed: [2048959] (in reverse order)
[2025-10-11 20:09:18] 2025-10-12 00:08:30,946 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 20:09:18] 2025-10-12 00:08:30,946 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 20:09:18] 2025-10-12 00:08:30,980 | INFO     | did not find any defunct processes belonging to 2048959
[2025-10-11 20:09:18] 2025-10-12 00:08:31,015 | INFO     | did not find any defunct processes belonging to 2048959
[2025-10-11 20:09:18] 2025-10-12 00:08:31,015 | INFO     | ready for new job
[2025-10-11 20:09:18] 2025-10-12 00:08:31,016 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 20:09:18] 2025-10-12 00:08:31,017 | INFO     | ***************************************
[2025-10-11 20:09:18] 2025-10-12 00:08:31,017 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 20:09:18] 2025-10-12 00:08:31,017 | INFO     | ***************************************
[2025-10-11 20:09:18] 2025-10-12 00:08:31,017 | INFO     | 
[2025-10-11 20:09:18] 2025-10-12 00:08:31,048 | INFO     | architecture information:
[2025-10-11 20:09:18] 2025-10-12 00:08:31,049 | INFO     | executing command: cat /etc/os-release
[2025-10-11 20:09:18] 2025-10-12 00:08:31,130 | INFO     | cat /etc/os-release:
[2025-10-11 20:09:18] NAME="CentOS Linux"
[2025-10-11 20:09:18] VERSION="7 (Core)"
[2025-10-11 20:09:18] ID="centos"
[2025-10-11 20:09:18] ID_LIKE="rhel fedora"
[2025-10-11 20:09:18] VERSION_ID="7"
[2025-10-11 20:09:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 20:09:18] ANSI_COLOR="0;31"
[2025-10-11 20:09:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 20:09:18] HOME_URL="https://www.centos.org/"
[2025-10-11 20:09:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 20:09:18] 
[2025-10-11 20:09:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 20:09:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 20:09:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 20:09:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 20:09:18] 
[2025-10-11 20:09:18] 2025-10-12 00:08:31,130 | INFO     | ***************************************
[2025-10-11 20:09:18] 2025-10-12 00:08:31,634 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 20:09:18] 2025-10-12 00:08:31,756 | INFO     | sufficient remaining disk space (73666658304 B)
[2025-10-11 20:09:18] 2025-10-12 00:08:31,757 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 20:09:18] 2025-10-12 00:08:31,757 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 20:09:18] 2025-10-12 00:08:31,757 | INFO     | update_server=False
[2025-10-11 20:09:18] 2025-10-12 00:08:31,757 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 20:09:18] 2025-10-12 00:08:31,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:09:18] 2025-10-12 00:08:31,757 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 20:09:18] 2025-10-12 00:08:31,980 | INFO     | all job control threads have been joined
[2025-10-11 20:09:18] 2025-10-12 00:08:32,225 | INFO     | all data control threads have been joined
[2025-10-11 20:09:18] 2025-10-12 00:08:32,291 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:09:18] 2025-10-12 00:08:32,291 | INFO     | aborting loop
[2025-10-11 20:09:18] 2025-10-12 00:08:32,763 | INFO     | [job] queue monitor thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:32,763 | INFO     | [job] retrieve thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:32,782 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 20:09:18] 2025-10-12 00:08:32,944 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:32,996 | INFO     | [job] control thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:33,163 | INFO     | all payload control threads have been joined
[2025-10-11 20:09:18] 2025-10-12 00:08:33,231 | INFO     | [data] control thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:33,303 | INFO     | [job] job monitor thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:33,328 | INFO     | [payload] validate_post thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:33,347 | INFO     | [payload] failed_post thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:33,539 | INFO     | [data] copytool_in thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:33,542 | INFO     | [job] validate thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:33,542 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:33,555 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:34,047 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:34,174 | INFO     | [payload] control thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:34,789 | INFO     | [data] copytool_out thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:08:35,767 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 20:09:18] 2025-10-12 00:09:04,194 | INFO     | PID=1999440 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 20:09:18] 2025-10-12 00:09:04,195 | INFO     | .. there are 96 such processes running
[2025-10-11 20:09:18] 2025-10-12 00:09:04,195 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 20:09:18] 2025-10-12 00:09:04,195 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 20:09:18] 2025-10-12 00:09:04,195 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 20:09:18] 2025-10-12 00:09:11,720 | INFO     | [monitor] cgroup control has ended
[2025-10-11 20:09:18] 2025-10-12 00:09:12,576 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140199688742720)>', '<ExcThread(monitor, started 140199419942656)>']
[2025-10-11 20:09:18] 2025-10-12 00:09:13,281 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 20:09:18] 2025-10-12 00:09:13,281 | INFO     | [monitor] control thread has ended
[2025-10-11 20:09:18] 2025-10-12 00:09:17,602 | INFO     | all workflow threads have been joined
[2025-10-11 20:09:18] 2025-10-12 00:09:17,602 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 20:09:18] 2025-10-12 00:09:17,602 | INFO     | traces error code: 0
[2025-10-11 20:09:18] 2025-10-12 00:09:17,602 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 20:09:18] 2025-10-12 00:09:18,198 [wrapper] ==== pilot stdout END ====
[2025-10-11 20:09:18] 2025-10-12 00:09:18,221 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 20:09:18] 2025-10-12 00:09:18,240 [wrapper] pilotpid: 1999440
[2025-10-11 20:09:18] 2025-10-12 00:09:18,243 [wrapper] Pilot exit status: 0
[2025-10-11 20:09:18] 2025-10-12 00:09:18,267 [wrapper] pandaids: 6835977232 6835977232
[2025-10-11 20:09:18] 2025-10-12 00:09:18,580 [wrapper] cleanup supervisor_pilot 3996005 1999441
[2025-10-11 20:09:18] 2025-10-12 00:09:18,592 [wrapper] Test setup, not cleaning
[2025-10-11 20:09:18] 2025-10-12 00:09:18,607 [wrapper] apfmon messages muted
[2025-10-11 20:09:18] 2025-10-12 00:09:18,614 [wrapper] ==== wrapper stdout END ====
[2025-10-11 20:09:18] 2025-10-12 00:09:18,625 [wrapper] ==== wrapper stderr END ====
[2025-10-11 20:09:18]  *** Error codes and diagnostics ***
[2025-10-11 20:09:18]     "exeErrorCode": 0,
[2025-10-11 20:09:18]     "exeErrorDiag": "",
[2025-10-11 20:09:18]     "pilotErrorCode": 0,
[2025-10-11 20:09:18]     "pilotErrorDiag": "",
[2025-10-11 20:09:18]  *** Listing of results directory ***
[2025-10-11 20:09:18] total 622588
[2025-10-11 20:09:18] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 05:48 pilot3.tar.gz
[2025-10-11 20:09:18] -rwx------. 1 boincer umatlas     36292 Oct  8 05:53 runpilot2-wrapper.sh
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 05:53 queuedata.json
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas       100 Oct 11 15:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 20:09:18] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 15:38 run_atlas
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas       105 Oct 11 15:38 job.xml
[2025-10-11 20:09:18] -rw-r--r--. 3 boincer umatlas 219369233 Oct 11 15:38 EVNT.46676267._000141.pool.root.1
[2025-10-11 20:09:18] -rw-r--r--. 3 boincer umatlas 219369233 Oct 11 15:38 ATLAS.root_0
[2025-10-11 20:09:18] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 15:38 start_atlas.sh
[2025-10-11 20:09:18] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 15:38 shared
[2025-10-11 20:09:18] -rw-r--r--. 2 boincer umatlas    569685 Oct 11 15:38 input.tar.gz
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas         0 Oct 11 15:38 boinc_lockfile
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas      2548 Oct 11 16:47 pandaJob.out
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas    975528 Oct 11 16:47 agis_schedconf.cvmfs.json
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas      6934 Oct 11 20:04 init_data.xml
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas 191035790 Oct 11 20:06 HITS.46676269._003521.pool.root.1
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas       531 Oct 11 20:06 boinc_task_state.xml
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas      1065 Oct 11 20:07 memory_monitor_summary.json
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas   1560580 Oct 11 20:07 agis_ddmendpoints.agis.ALL.json
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas    457075 Oct 11 20:07 log.46676269._003521.job.log.tgz.1
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas      7808 Oct 11 20:08 heartbeat.json
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas        96 Oct 11 20:08 pilot_heartbeat.json
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas      4824 Oct 11 20:09 pilotlog.txt
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 20:09 boinc_mmap_file
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas   1465454 Oct 11 20:09 log.46676269._003521.job.log.1
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas        28 Oct 11 20:09 wrapper_checkpoint.txt
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas       357 Oct 11 20:09 output.list
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas       620 Oct 11 20:09 runtime_log
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas   1945600 Oct 11 20:09 result.tar.gz
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas      8786 Oct 11 20:09 runtime_log.err
[2025-10-11 20:09:18] -rw-------. 1 boincer umatlas       784 Oct 11 20:09 1oWMDmN2fQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmwJMMDmOdGnFm.diag
[2025-10-11 20:09:18] -rw-r--r--. 1 boincer umatlas     23295 Oct 11 20:09 stderr.txt
[2025-10-11 20:09:19] HITS file was successfully produced:
[2025-10-11 20:09:19] -rw-------. 1 boincer umatlas 191035790 Oct 11 20:06 shared/HITS.pool.root.1
[2025-10-11 20:09:19]  *** Contents of shared directory: ***
[2025-10-11 20:09:19] total 403272
[2025-10-11 20:09:19] -rw-r--r--. 3 boincer umatlas 219369233 Oct 11 15:38 ATLAS.root_0
[2025-10-11 20:09:19] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 15:38 start_atlas.sh
[2025-10-11 20:09:19] -rw-r--r--. 2 boincer umatlas    569685 Oct 11 15:38 input.tar.gz
[2025-10-11 20:09:19] -rw-------. 1 boincer umatlas 191035790 Oct 11 20:06 HITS.pool.root.1
[2025-10-11 20:09:19] -rw-------. 1 boincer umatlas   1945600 Oct 11 20:09 result.tar.gz
20:09:20 (1972376): run_atlas exited; CPU time 29113.857824
20:09:20 (1972376): called boinc_finish(0)

</stderr_txt>
]]>

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