Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:26:40 (2743643): wrapper (7.7.26015): starting
12:26:40 (2743643): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 12:26:40] Arguments: --nthreads 12
[2025-10-11 12:26:40] Threads: 12
[2025-10-11 12:26:40] Checking for CVMFS
[2025-10-11 12:26:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 12:26:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 12:26:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 12:26:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 12:26:41] 2.11.5.0 3039 30433 159876 151594 1 305 32105373 45568001 20323 130560 0 319251452 99.872 125668381 25440 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-11 12:26:41] CVMFS is ok
[2025-10-11 12:26:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 12:26:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 12:26:41] Further information can be found at the LHC@home message board.
[2025-10-11 12:26:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 12:26:41] Checking for apptainer binary...
[2025-10-11 12:26:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 12:26:41] Running /usr/bin/apptainer --version
[2025-10-11 12:26:41] apptainer version 1.4.1-1.el9
[2025-10-11 12:26:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 12:26:41] wns0064.triumf.lcg
[2025-10-11 12:26:41] apptainer works
[2025-10-11 12:26:41] Set ATHENA_PROC_NUMBER=12
[2025-10-11 12:26:41] Set ATHENA_CORE_NUMBER=12
[2025-10-11 12:26:42] Starting ATLAS job with PandaID=6838634002
[2025-10-11 12:26:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 12:31:35]  *** The last 200 lines of the pilot log: ***
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | wrong length of table data, x=[1760210896.0], y=[1970.0] (must be same and length>=4)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | INFO     | could have reported an average CPU frequency of 2618 MHz (4 samples)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | ..............................
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . Timing measurements:
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . get job = 0 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . initial setup = 3 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . payload setup = 17 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . stage-in = 0 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . payload execution = 46 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . stage-out = 1 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . log creation = 0 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | ..............................
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838634002/pilotlog.txt
[2025-10-11 12:31:35] 2025-10-11 19:31:01,777 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-11 12:31:35] - Log from pilotlog.txt -
[2025-10-11 12:31:35] 2025-10-11 19:31:01,757 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838634002/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,757 | INFO     | extracted standard info from prmon json
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | wrong length of table data, x=[1760210896.0], y=[1970.0] (must be same and length>=4)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | INFO     | could have reported an average CPU frequency of 2618 MHz (4 samples)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | ..............................
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . Timing measurements:
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . get job = 0 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . initial setup = 3 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . payload setup = 17 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . stage-in = 0 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . payload execution = 46 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . stage-out = 1 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . log creation = 0 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | ..............................
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838634002/pilotlog.txt
[2025-10-11 12:31:35] 2025-10-11 19:31:01,778 | WARNING  | 
[2025-10-11 12:31:35] [begin log extracts]
[2025-10-11 12:31:35] - Log from pilotlog.txt -
[2025-10-11 12:31:35] 2025-10-11 19:31:01,757 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838634002/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,757 | INFO     | extracted standard info from prmon json
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | WARNING  | wrong length of table data, x=[1760210896.0], y=[1970.0] (must be same and length>=4)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,758 | INFO     | could have reported an average CPU frequency of 2618 MHz (4 samples)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | ..............................
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . Timing measurements:
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . get job = 0 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . initial setup = 3 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . payload setup = 17 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . stage-in = 0 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . payload execution = 46 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . stage-out = 1 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | . log creation = 0 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | ..............................
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 12:31:35] 2025-10-11 19:31:01,759 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838634002/pilotlog.txt
[2025-10-11 12:31:35] [end log extracts]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,778 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,778 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-11 12:31:35] 2025-10-11 19:31:01,839 | INFO     | 
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | job summary report
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | --------------------------------------------------
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | PanDA job id: 6838634002
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | task id: 46676269
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-11 12:28:42,408 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | pilot state: failed 
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | transexitcode: 65
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | exeerrorcode: 65
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | exitcode: 65
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | cpuconsumptiontime: 19 s
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | nevents: 0
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | neventsw: 0
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | pid: 2768439
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | pgrp: 2768439
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | corecount: 12
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | event service: False
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | sizes: {0: 2348848, 11: 2348848, 13: 2349138, 21: 2349194, 67: 2372397, 69: 2376845, 198: 2376983}
[2025-10-11 12:31:35] 2025-10-11 19:31:01,840 | INFO     | --------------------------------------------------
[2025-10-11 12:31:35] 2025-10-11 19:31:01,841 | INFO     | 
[2025-10-11 12:31:35] 2025-10-11 19:31:01,841 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,876 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,877 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,877 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,877 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,877 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,877 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,877 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,877 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 12:31:35] 2025-10-11 19:31:01,877 | INFO     | job 6838634002 has completed (purged errors)
[2025-10-11 12:31:35] 2025-10-11 19:31:01,877 | INFO     | overall cleanup function is called
[2025-10-11 12:31:35] 2025-10-11 19:31:02,885 | INFO     | --- collectZombieJob: --- 10, [2768439]
[2025-10-11 12:31:35] 2025-10-11 19:31:02,885 | INFO     | zombie collector waiting for pid 2768439
[2025-10-11 12:31:35] 2025-10-11 19:31:02,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 12:31:35] 2025-10-11 19:31:02,885 | INFO     | collected zombie processes
[2025-10-11 12:31:35] 2025-10-11 19:31:02,885 | INFO     | will attempt to kill all subprocesses of pid=2768439
[2025-10-11 12:31:35] 2025-10-11 19:31:03,100 | INFO     | process IDs to be killed: [2768439] (in reverse order)
[2025-10-11 12:31:35] 2025-10-11 19:31:03,240 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 12:31:35] 2025-10-11 19:31:03,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 12:31:35] 2025-10-11 19:31:03,259 | INFO     | did not find any defunct processes belonging to 2768439
[2025-10-11 12:31:35] 2025-10-11 19:31:03,278 | INFO     | did not find any defunct processes belonging to 2768439
[2025-10-11 12:31:35] 2025-10-11 19:31:03,279 | INFO     | ready for new job
[2025-10-11 12:31:35] 2025-10-11 19:31:03,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 12:31:35] 2025-10-11 19:31:03,281 | INFO     | ***************************************
[2025-10-11 12:31:35] 2025-10-11 19:31:03,281 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 12:31:35] 2025-10-11 19:31:03,281 | INFO     | ***************************************
[2025-10-11 12:31:35] 2025-10-11 19:31:03,281 | INFO     | 
[2025-10-11 12:31:35] 2025-10-11 19:31:03,286 | INFO     | architecture information:
[2025-10-11 12:31:35] 2025-10-11 19:31:03,288 | INFO     | executing command: cat /etc/os-release
[2025-10-11 12:31:35] 2025-10-11 19:31:03,315 | INFO     | cat /etc/os-release:
[2025-10-11 12:31:35] NAME="CentOS Linux"
[2025-10-11 12:31:35] VERSION="7 (Core)"
[2025-10-11 12:31:35] ID="centos"
[2025-10-11 12:31:35] ID_LIKE="rhel fedora"
[2025-10-11 12:31:35] VERSION_ID="7"
[2025-10-11 12:31:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 12:31:35] ANSI_COLOR="0;31"
[2025-10-11 12:31:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 12:31:35] HOME_URL="https://www.centos.org/"
[2025-10-11 12:31:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 12:31:35] 
[2025-10-11 12:31:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 12:31:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 12:31:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 12:31:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 12:31:35] 
[2025-10-11 12:31:35] 2025-10-11 19:31:03,315 | INFO     | ***************************************
[2025-10-11 12:31:35] 2025-10-11 19:31:03,819 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-11 12:31:35] 2025-10-11 19:31:03,856 | INFO     | sufficient remaining disk space (1811043844096 B)
[2025-10-11 12:31:35] 2025-10-11 19:31:03,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 12:31:35] 2025-10-11 19:31:03,857 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 12:31:35] 2025-10-11 19:31:03,857 | INFO     | update_server=False
[2025-10-11 12:31:35] 2025-10-11 19:31:03,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 12:31:35] 2025-10-11 19:31:03,858 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 12:31:35] 2025-10-11 19:31:04,019 | INFO     | all job control threads have been joined
[2025-10-11 12:31:35] 2025-10-11 19:31:04,391 | INFO     | all payload control threads have been joined
[2025-10-11 12:31:35] 2025-10-11 19:31:04,600 | INFO     | all data control threads have been joined
[2025-10-11 12:31:35] 2025-10-11 19:31:04,642 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:31:35] 2025-10-11 19:31:04,642 | INFO     | aborting loop
[2025-10-11 12:31:35] 2025-10-11 19:31:04,862 | INFO     | [job] retrieve thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:05,024 | INFO     | [job] control thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:05,139 | INFO     | [payload] failed_post thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:05,177 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:05,199 | INFO     | [job] validate thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:05,281 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:05,397 | INFO     | [payload] control thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:05,605 | INFO     | [data] control thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:05,652 | INFO     | [job] job monitor thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:05,708 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:05,709 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:05,757 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 12:31:35] 2025-10-11 19:31:05,865 | INFO     | [data] copytool_out thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:06,068 | INFO     | [payload] validate_post thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:06,268 | INFO     | [data] copytool_in thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:06,852 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:31:35] 2025-10-11 19:31:07,236 | INFO     | [monitor] cgroup control has ended
[2025-10-11 12:31:35] 2025-10-11 19:31:07,858 | INFO     | [job] queue monitor thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:09,765 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 12:31:35] 2025-10-11 19:31:10,071 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140335003178816)>', '<ExcThread(monitor, started 140334071793408)>']
[2025-10-11 12:31:35] 2025-10-11 19:31:15,097 | INFO     | all workflow threads have been joined
[2025-10-11 12:31:35] 2025-10-11 19:31:15,097 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 12:31:35] 2025-10-11 19:31:15,097 | INFO     | traces error code: 0
[2025-10-11 12:31:35] 2025-10-11 19:31:15,097 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 12:31:35] 2025-10-11 19:31:34,964 | INFO     | PID=2753108 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 12:31:35] 2025-10-11 19:31:34,965 | INFO     | .. there are 35 such processes running
[2025-10-11 12:31:35] 2025-10-11 19:31:34,965 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 12:31:35] 2025-10-11 19:31:34,965 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 12:31:35] 2025-10-11 19:31:34,965 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 12:31:35] 2025-10-11 19:31:34,966 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 12:31:35] 2025-10-11 19:31:34,966 | INFO     | [monitor] control thread has ended
[2025-10-11 12:31:35] 2025-10-11 19:31:35,084 [wrapper] ==== pilot stdout END ====
[2025-10-11 12:31:35] 2025-10-11 19:31:35,087 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 12:31:35] 2025-10-11 19:31:35,092 [wrapper] pilotpid: 2753108
[2025-10-11 12:31:35] 2025-10-11 19:31:35,098 [wrapper] Pilot exit status: 0
[2025-10-11 12:31:35] 2025-10-11 19:31:35,146 [wrapper] pandaids: 6838634002
[2025-10-11 12:31:35] 2025-10-11 19:31:35,213 [wrapper] cleanup supervisor_pilot 2753121 2753109
[2025-10-11 12:31:35] 2025-10-11 19:31:35,221 [wrapper] Test setup, not cleaning
[2025-10-11 12:31:35] 2025-10-11 19:31:35,231 [wrapper] apfmon messages muted
[2025-10-11 12:31:35] 2025-10-11 19:31:35,241 [wrapper] ==== wrapper stdout END ====
[2025-10-11 12:31:35] 2025-10-11 19:31:35,251 [wrapper] ==== wrapper stderr END ====
[2025-10-11 12:31:35]  *** Error codes and diagnostics ***
[2025-10-11 12:31:35]     "exeErrorCode": 65,
[2025-10-11 12:31:35]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 12:31:35]     "pilotErrorCode": 1305,
[2025-10-11 12:31:35]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 12:31:35]  *** Listing of results directory ***
[2025-10-11 12:31:35] total 221672
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc    557409 Oct 11 10:07 pilot3.tar.gz
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc      5112 Oct 11 10:10 queuedata.json
[2025-10-11 12:31:35] -rwx------. 1 boinc boinc     36292 Oct 11 10:10 runpilot2-wrapper.sh
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc       100 Oct 11 12:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 12:31:35] -rwxr-xr-x. 1 boinc boinc      7986 Oct 11 12:26 run_atlas
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc       105 Oct 11 12:26 job.xml
[2025-10-11 12:31:35] -rw-r--r--. 2 boinc boinc 222862973 Oct 11 12:26 EVNT.46676267._002471.pool.root.1
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc      6594 Oct 11 12:26 init_data.xml
[2025-10-11 12:31:35] -rw-r--r--. 2 boinc boinc     15120 Oct 11 12:26 start_atlas.sh
[2025-10-11 12:31:35] drwxrwx--x. 2 boinc boinc      4096 Oct 11 12:26 shared
[2025-10-11 12:31:35] -rw-r--r--. 2 boinc boinc    569679 Oct 11 12:26 input.tar.gz
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc         0 Oct 11 12:26 boinc_lockfile
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc      2547 Oct 11 12:26 pandaJob.out
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc    975512 Oct 11 12:27 agis_schedconf.cvmfs.json
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc   1560580 Oct 11 12:27 agis_ddmendpoints.agis.ALL.json
[2025-10-11 12:31:35] drwx------. 5 boinc boinc      4096 Oct 11 12:27 pilot3
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc       524 Oct 11 12:28 boinc_task_state.xml
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc       950 Oct 11 12:28 memory_monitor_summary.json
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc     22143 Oct 11 12:28 log.46676269._061522.job.log.tgz.1
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc      8381 Oct 11 12:31 heartbeat.json
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc      8192 Oct 11 12:31 boinc_mmap_file
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc        22 Oct 11 12:31 wrapper_checkpoint.txt
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc        95 Oct 11 12:31 pilot_heartbeat.json
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc       823 Oct 11 12:31 pilotlog.txt
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc     90851 Oct 11 12:31 log.46676269._061522.job.log.1
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc       188 Oct 11 12:31 output.list
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc       620 Oct 11 12:31 runtime_log
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc    133120 Oct 11 12:31 result.tar.gz
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc      8528 Oct 11 12:31 runtime_log.err
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc       645 Oct 11 12:31 jc3NDm3HsR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm51gNDmKA2QAo.diag
[2025-10-11 12:31:35] -rw-r--r--. 1 boinc boinc     20521 Oct 11 12:31 stderr.txt
[2025-10-11 12:31:35] No HITS result produced
[2025-10-11 12:31:35]  *** Contents of shared directory: ***
[2025-10-11 12:31:35] total 218352
[2025-10-11 12:31:35] -rw-r--r--. 2 boinc boinc 222862973 Oct 11 12:26 ATLAS.root_0
[2025-10-11 12:31:35] -rw-r--r--. 2 boinc boinc     15120 Oct 11 12:26 start_atlas.sh
[2025-10-11 12:31:35] -rw-r--r--. 2 boinc boinc    569679 Oct 11 12:26 input.tar.gz
[2025-10-11 12:31:35] -rw-------. 1 boinc boinc    133120 Oct 11 12:31 result.tar.gz
12:31:37 (2743643): run_atlas exited; CPU time 27.441212
12:31:37 (2743643): called boinc_finish(0)

</stderr_txt>
]]>

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