Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:24:34 (3927689): wrapper (7.7.26015): starting
12:24:34 (3927689): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 12:24:34] Arguments: --nthreads 12
[2025-10-11 12:24:34] Threads: 12
[2025-10-11 12:24:34] Checking for CVMFS
[2025-10-11 12:24:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 12:24:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 12:24:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 12:24:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 12:24:38] 2.11.5.0 2072 30101 213540 151594 1 15 38718235 45568000 25531 130560 0 215345207 99.858 99062916 25133 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-11 12:24:38] CVMFS is ok
[2025-10-11 12:24:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 12:24:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 12:24:39] Further information can be found at the LHC@home message board.
[2025-10-11 12:24:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 12:24:39] Checking for apptainer binary...
[2025-10-11 12:24:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 12:24:39] Running /usr/bin/apptainer --version
[2025-10-11 12:24:39] apptainer version 1.4.1-1.el9
[2025-10-11 12:24:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 12:24:40] wns0042.triumf.lcg
[2025-10-11 12:24:40] apptainer works
[2025-10-11 12:24:41] Set ATHENA_PROC_NUMBER=12
[2025-10-11 12:24:41] Set ATHENA_CORE_NUMBER=12
[2025-10-11 12:24:41] Starting ATLAS job with PandaID=6838633933
[2025-10-11 12:24:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 12:32:49]  *** The last 200 lines of the pilot log: ***
[2025-10-11 12:32:49] 2025-10-11 19:31:55,200 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | WARNING  | wrong length of table data, x=[1760210908.0], y=[2638.0] (must be same and length>=4)
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | could have reported an average CPU frequency of 1449 MHz (4 samples)
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | ..............................
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . Timing measurements:
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . get job = 0 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . initial setup = 6 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . payload setup = 43 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . stage-in = 1 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . payload execution = 84 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . stage-out = 2 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . log creation = 0 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | ..............................
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838633933/pilotlog.txt
[2025-10-11 12:32:49] 2025-10-11 19:31:55,317 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-11 12:32:49] - Log from pilotlog.txt -
[2025-10-11 12:32:49] 2025-10-11 19:31:55,198 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838633933/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 12:32:49] 2025-10-11 19:31:55,199 | INFO     | extracted standard info from prmon json
[2025-10-11 12:32:49] 2025-10-11 19:31:55,199 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 12:32:49] 2025-10-11 19:31:55,199 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 12:32:49] 2025-10-11 19:31:55,200 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 12:32:49] 2025-10-11 19:31:55,200 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | WARNING  | wrong length of table data, x=[1760210908.0], y=[2638.0] (must be same and length>=4)
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | could have reported an average CPU frequency of 1449 MHz (4 samples)
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | ..............................
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . Timing measurements:
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . get job = 0 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . initial setup = 6 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . payload setup = 43 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . stage-in = 1 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . payload execution = 84 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . stage-out = 2 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . log creation = 0 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | ..............................
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838633933/pilotlog.txt
[2025-10-11 12:32:49] 2025-10-11 19:31:55,318 | WARNING  | 
[2025-10-11 12:32:49] [begin log extracts]
[2025-10-11 12:32:49] - Log from pilotlog.txt -
[2025-10-11 12:32:49] 2025-10-11 19:31:55,198 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838633933/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 12:32:49] 2025-10-11 19:31:55,199 | INFO     | extracted standard info from prmon json
[2025-10-11 12:32:49] 2025-10-11 19:31:55,199 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 12:32:49] 2025-10-11 19:31:55,199 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 12:32:49] 2025-10-11 19:31:55,200 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 12:32:49] 2025-10-11 19:31:55,200 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | WARNING  | wrong length of table data, x=[1760210908.0], y=[2638.0] (must be same and length>=4)
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | could have reported an average CPU frequency of 1449 MHz (4 samples)
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | ..............................
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . Timing measurements:
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . get job = 0 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . initial setup = 6 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,219 | INFO     | . payload setup = 43 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . stage-in = 1 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . payload execution = 84 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . stage-out = 2 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | . log creation = 0 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | ..............................
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 12:32:49] 2025-10-11 19:31:55,220 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838633933/pilotlog.txt
[2025-10-11 12:32:49] [end log extracts]
[2025-10-11 12:32:49] 2025-10-11 19:31:55,319 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-11 12:32:49] 2025-10-11 19:31:55,320 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-11 12:32:49] 2025-10-11 19:31:55,854 | INFO     | 
[2025-10-11 12:32:49] 2025-10-11 19:31:55,854 | INFO     | job summary report
[2025-10-11 12:32:49] 2025-10-11 19:31:55,854 | INFO     | --------------------------------------------------
[2025-10-11 12:32:49] 2025-10-11 19:31:55,855 | INFO     | PanDA job id: 6838633933
[2025-10-11 12:32:49] 2025-10-11 19:31:55,855 | INFO     | task id: 46676269
[2025-10-11 12:32:49] 2025-10-11 19:31:55,855 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-11 12:29:07,158 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-11 12:32:49] 2025-10-11 19:31:55,855 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 12:32:49] 2025-10-11 19:31:55,855 | INFO     | pilot state: failed 
[2025-10-11 12:32:49] 2025-10-11 19:31:55,855 | INFO     | transexitcode: 65
[2025-10-11 12:32:49] 2025-10-11 19:31:55,869 | INFO     | exeerrorcode: 65
[2025-10-11 12:32:49] 2025-10-11 19:31:55,869 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 12:32:49] 2025-10-11 19:31:55,869 | INFO     | exitcode: 65
[2025-10-11 12:32:49] 2025-10-11 19:31:55,869 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 12:32:49] 2025-10-11 19:31:55,869 | INFO     | cpuconsumptiontime: 29 s
[2025-10-11 12:32:49] 2025-10-11 19:31:55,870 | INFO     | nevents: 0
[2025-10-11 12:32:49] 2025-10-11 19:31:55,870 | INFO     | neventsw: 0
[2025-10-11 12:32:49] 2025-10-11 19:31:55,870 | INFO     | pid: 3938765
[2025-10-11 12:32:49] 2025-10-11 19:31:55,870 | INFO     | pgrp: 3938765
[2025-10-11 12:32:49] 2025-10-11 19:31:55,870 | INFO     | corecount: 12
[2025-10-11 12:32:49] 2025-10-11 19:31:55,870 | INFO     | event service: False
[2025-10-11 12:32:49] 2025-10-11 19:31:55,870 | INFO     | sizes: {0: 2348683, 1: 2348683, 2: 2348711, 3: 2348938, 14: 2348938, 26: 2348966, 38: 2338351, 39: 2349412, 50: 2349440, 132: 2372674, 135: 2376966, 138: 2377274, 
[2025-10-11 12:32:49] 2025-10-11 19:31:55,870 | INFO     | --------------------------------------------------
[2025-10-11 12:32:49] 2025-10-11 19:31:55,870 | INFO     | 
[2025-10-11 12:32:49] 2025-10-11 19:31:55,870 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-11 12:32:49] 2025-10-11 19:31:56,055 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,055 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,055 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,055 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,055 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,055 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,056 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,056 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,056 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,056 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,056 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,056 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,056 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,056 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,056 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,056 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,057 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,057 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 12:32:49] 2025-10-11 19:31:56,057 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,057 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 12:32:49] 2025-10-11 19:31:56,057 | INFO     | job 6838633933 has completed (purged errors)
[2025-10-11 12:32:49] 2025-10-11 19:31:56,057 | INFO     | overall cleanup function is called
[2025-10-11 12:32:49] 2025-10-11 19:31:57,106 | INFO     | --- collectZombieJob: --- 10, [3938765]
[2025-10-11 12:32:49] 2025-10-11 19:31:57,107 | INFO     | zombie collector waiting for pid 3938765
[2025-10-11 12:32:49] 2025-10-11 19:31:57,107 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 12:32:49] 2025-10-11 19:31:57,107 | INFO     | collected zombie processes
[2025-10-11 12:32:49] 2025-10-11 19:31:57,107 | INFO     | will attempt to kill all subprocesses of pid=3938765
[2025-10-11 12:32:49] 2025-10-11 19:31:59,013 | INFO     | PID=3931609 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 12:32:49] 2025-10-11 19:31:59,014 | INFO     | .. there are 41 such processes running
[2025-10-11 12:32:49] 2025-10-11 19:31:59,471 | INFO     | process IDs to be killed: [3938765] (in reverse order)
[2025-10-11 12:32:49] 2025-10-11 19:31:59,614 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 12:32:49] 2025-10-11 19:31:59,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 12:32:49] 2025-10-11 19:31:59,663 | INFO     | did not find any defunct processes belonging to 3938765
[2025-10-11 12:32:49] 2025-10-11 19:31:59,720 | INFO     | did not find any defunct processes belonging to 3938765
[2025-10-11 12:32:49] 2025-10-11 19:31:59,721 | INFO     | ready for new job
[2025-10-11 12:32:49] 2025-10-11 19:31:59,721 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 12:32:49] 2025-10-11 19:31:59,728 | INFO     | ***************************************
[2025-10-11 12:32:49] 2025-10-11 19:31:59,729 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 12:32:49] 2025-10-11 19:31:59,729 | INFO     | ***************************************
[2025-10-11 12:32:49] 2025-10-11 19:31:59,729 | INFO     | 
[2025-10-11 12:32:49] 2025-10-11 19:31:59,740 | INFO     | architecture information:
[2025-10-11 12:32:49] 2025-10-11 19:31:59,741 | INFO     | executing command: cat /etc/os-release
[2025-10-11 12:32:49] 2025-10-11 19:31:59,804 | INFO     | cat /etc/os-release:
[2025-10-11 12:32:49] NAME="CentOS Linux"
[2025-10-11 12:32:49] VERSION="7 (Core)"
[2025-10-11 12:32:49] ID="centos"
[2025-10-11 12:32:49] ID_LIKE="rhel fedora"
[2025-10-11 12:32:49] VERSION_ID="7"
[2025-10-11 12:32:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 12:32:49] ANSI_COLOR="0;31"
[2025-10-11 12:32:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 12:32:49] HOME_URL="https://www.centos.org/"
[2025-10-11 12:32:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 12:32:49] 
[2025-10-11 12:32:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 12:32:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 12:32:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 12:32:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 12:32:49] 
[2025-10-11 12:32:49] 2025-10-11 19:31:59,805 | INFO     | ***************************************
[2025-10-11 12:32:49] 2025-10-11 19:32:00,308 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-11 12:32:49] 2025-10-11 19:32:00,366 | INFO     | sufficient remaining disk space (1988751261696 B)
[2025-10-11 12:32:49] 2025-10-11 19:32:00,367 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 12:32:49] 2025-10-11 19:32:00,367 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 12:32:49] 2025-10-11 19:32:00,367 | INFO     | update_server=False
[2025-10-11 12:32:49] 2025-10-11 19:32:00,367 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 12:32:49] 2025-10-11 19:32:00,368 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:32:49] 2025-10-11 19:32:00,368 | INFO     | aborting loop
[2025-10-11 12:32:49] 2025-10-11 19:32:00,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 12:32:49] 2025-10-11 19:32:00,406 | INFO     | all data control threads have been joined
[2025-10-11 12:32:49] 2025-10-11 19:32:00,892 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:32:49] 2025-10-11 19:32:01,385 | INFO     | [job] retrieve thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:01,386 | INFO     | [job] job monitor thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:01,413 | INFO     | [data] control thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:01,538 | INFO     | all job control threads have been joined
[2025-10-11 12:32:49] 2025-10-11 19:32:01,792 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:01,858 | INFO     | [data] copytool_in thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:01,876 | INFO     | all payload control threads have been joined
[2025-10-11 12:32:49] 2025-10-11 19:32:01,898 | INFO     | [job] queue monitor thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:02,380 | INFO     | [job] validate thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:02,391 | INFO     | [data] copytool_out thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:02,401 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:02,412 | INFO     | [payload] failed_post thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:02,544 | INFO     | [job] control thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:02,582 | INFO     | [payload] validate_post thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:02,616 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:02,799 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:02,882 | INFO     | [payload] control thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:03,616 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 12:32:49] 2025-10-11 19:32:07,628 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 12:32:49] 2025-10-11 19:32:33,073 | INFO     | PID=3931609 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 12:32:49] 2025-10-11 19:32:33,073 | INFO     | .. there are 42 such processes running
[2025-10-11 12:32:49] 2025-10-11 19:32:33,073 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 12:32:49] 2025-10-11 19:32:33,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 12:32:49] 2025-10-11 19:32:33,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 12:32:49] 2025-10-11 19:32:42,583 | INFO     | [monitor] cgroup control has ended
[2025-10-11 12:32:49] 2025-10-11 19:32:43,380 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139721643996992)>', '<ExcThread(monitor, started 139721082644224)>']
[2025-10-11 12:32:49] 2025-10-11 19:32:44,139 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 12:32:49] 2025-10-11 19:32:44,139 | INFO     | [monitor] control thread has ended
[2025-10-11 12:32:49] 2025-10-11 19:32:48,415 | INFO     | all workflow threads have been joined
[2025-10-11 12:32:49] 2025-10-11 19:32:48,415 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 12:32:49] 2025-10-11 19:32:48,415 | INFO     | traces error code: 0
[2025-10-11 12:32:49] 2025-10-11 19:32:48,416 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 12:32:49] 2025-10-11 19:32:48,733 [wrapper] ==== pilot stdout END ====
[2025-10-11 12:32:49] 2025-10-11 19:32:48,760 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 12:32:49] 2025-10-11 19:32:48,771 [wrapper] pilotpid: 3931609
[2025-10-11 12:32:49] 2025-10-11 19:32:48,779 [wrapper] Pilot exit status: 0
[2025-10-11 12:32:49] 2025-10-11 19:32:48,846 [wrapper] pandaids: 6838633933
[2025-10-11 12:32:49] 2025-10-11 19:32:48,958 [wrapper] cleanup supervisor_pilot 3931616 3931610
[2025-10-11 12:32:49] 2025-10-11 19:32:48,963 [wrapper] Test setup, not cleaning
[2025-10-11 12:32:49] 2025-10-11 19:32:48,966 [wrapper] apfmon messages muted
[2025-10-11 12:32:49] 2025-10-11 19:32:48,969 [wrapper] ==== wrapper stdout END ====
[2025-10-11 12:32:49] 2025-10-11 19:32:48,972 [wrapper] ==== wrapper stderr END ====
[2025-10-11 12:32:49]  *** Error codes and diagnostics ***
[2025-10-11 12:32:49]     "exeErrorCode": 65,
[2025-10-11 12:32:49]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 12:32:49]     "pilotErrorCode": 1305,
[2025-10-11 12:32:49]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 12:32:49]  *** Listing of results directory ***
[2025-10-11 12:32:49] total 220000
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc    557409 Oct 11 10:07 pilot3.tar.gz
[2025-10-11 12:32:49] -rwx------. 1 boinc boinc     36292 Oct 11 10:08 runpilot2-wrapper.sh
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc      5112 Oct 11 10:08 queuedata.json
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc       100 Oct 11 12:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 12:32:49] -rwxr-xr-x. 1 boinc boinc      7986 Oct 11 12:24 run_atlas
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc       105 Oct 11 12:24 job.xml
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc      6594 Oct 11 12:24 init_data.xml
[2025-10-11 12:32:49] -rw-r--r--. 2 boinc boinc 221128757 Oct 11 12:24 EVNT.46676267._002468.pool.root.1
[2025-10-11 12:32:49] -rw-r--r--. 2 boinc boinc     15120 Oct 11 12:24 start_atlas.sh
[2025-10-11 12:32:49] drwxrwx--x. 2 boinc boinc      4096 Oct 11 12:24 shared
[2025-10-11 12:32:49] -rw-r--r--. 2 boinc boinc    569677 Oct 11 12:24 input.tar.gz
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc         0 Oct 11 12:24 boinc_lockfile
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc      2550 Oct 11 12:24 pandaJob.out
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc    975512 Oct 11 12:25 agis_schedconf.cvmfs.json
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc   1560580 Oct 11 12:25 agis_ddmendpoints.agis.ALL.json
[2025-10-11 12:32:49] drwx------. 5 boinc boinc      4096 Oct 11 12:25 pilot3
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc       955 Oct 11 12:29 memory_monitor_summary.json
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc     22854 Oct 11 12:29 log.46676269._061453.job.log.tgz.1
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc        95 Oct 11 12:31 pilot_heartbeat.json
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc      8397 Oct 11 12:31 heartbeat.json
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc       525 Oct 11 12:32 boinc_task_state.xml
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc        23 Oct 11 12:32 wrapper_checkpoint.txt
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc      4823 Oct 11 12:32 pilotlog.txt
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc      8192 Oct 11 12:32 boinc_mmap_file
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc    101535 Oct 11 12:32 log.46676269._061453.job.log.1
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc       188 Oct 11 12:32 output.list
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc       620 Oct 11 12:32 runtime_log
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc    143360 Oct 11 12:32 result.tar.gz
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc       646 Oct 11 12:32 wZZNDm5FsR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmr1gNDmzPGQPn.diag
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc      8528 Oct 11 12:32 runtime_log.err
[2025-10-11 12:32:49] -rw-r--r--. 1 boinc boinc     21962 Oct 11 12:32 stderr.txt
[2025-10-11 12:32:49] No HITS result produced
[2025-10-11 12:32:49]  *** Contents of shared directory: ***
[2025-10-11 12:32:49] total 216668
[2025-10-11 12:32:49] -rw-r--r--. 2 boinc boinc 221128757 Oct 11 12:24 ATLAS.root_0
[2025-10-11 12:32:49] -rw-r--r--. 2 boinc boinc     15120 Oct 11 12:24 start_atlas.sh
[2025-10-11 12:32:49] -rw-r--r--. 2 boinc boinc    569677 Oct 11 12:24 input.tar.gz
[2025-10-11 12:32:49] -rw-------. 1 boinc boinc    143360 Oct 11 12:32 result.tar.gz
12:32:50 (3927689): run_atlas exited; CPU time 50.074117
12:32:50 (3927689): called boinc_finish(0)

</stderr_txt>
]]>

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