Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:49:38 (3429284): wrapper (7.7.26015): starting
04:49:38 (3429284): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 04:49:38] Arguments: --nthreads 4
[2025-10-12 04:49:38] Threads: 4
[2025-10-12 04:49:38] Checking for CVMFS
[2025-10-12 04:49:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 04:49:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 04:49:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 04:49:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 04:49:38] 2.9.2.0 2165438 3578 97100 151604 0 57 31824548 36864001 0 130560 0 3282781 99.991 124403 989 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 04:49:38] CVMFS is ok
[2025-10-12 04:49:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 04:49:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 04:49:38] Further information can be found at the LHC@home message board.
[2025-10-12 04:49:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 04:49:38] Checking for apptainer binary...
[2025-10-12 04:49:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 04:49:38] Running /usr/bin/apptainer --version
[2025-10-12 04:49:38] apptainer version 1.4.1-1.1
[2025-10-12 04:49:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 04:49:38] thA305a
[2025-10-12 04:49:38] apptainer works
[2025-10-12 04:49:38] Set ATHENA_PROC_NUMBER=4
[2025-10-12 04:49:38] Set ATHENA_CORE_NUMBER=4
[2025-10-12 04:49:38] Starting ATLAS job with PandaID=6838453264
[2025-10-12 04:49:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 05:58:58]  *** The last 200 lines of the pilot log: ***
[2025-10-12 05:58:58] 2025-10-12 03:58:25,925 | INFO     | overall cleanup function is called
[2025-10-12 05:58:58] 2025-10-12 03:58:26,932 | INFO     | --- collectZombieJob: --- 10, [3439674]
[2025-10-12 05:58:58] 2025-10-12 03:58:26,932 | INFO     | zombie collector waiting for pid 3439674
[2025-10-12 05:58:58] 2025-10-12 03:58:26,932 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 05:58:58] 2025-10-12 03:58:26,932 | INFO     | collected zombie processes
[2025-10-12 05:58:58] 2025-10-12 03:58:26,932 | INFO     | will attempt to kill all subprocesses of pid=3439674
[2025-10-12 05:58:58] 2025-10-12 03:58:26,976 | INFO     | process IDs to be killed: [3439674] (in reverse order)
[2025-10-12 05:58:58] 2025-10-12 03:58:27,009 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 05:58:58] 2025-10-12 03:58:27,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 05:58:58] 2025-10-12 03:58:27,011 | INFO     | did not find any defunct processes belonging to 3439674
[2025-10-12 05:58:58] 2025-10-12 03:58:27,013 | INFO     | did not find any defunct processes belonging to 3439674
[2025-10-12 05:58:58] 2025-10-12 03:58:27,013 | INFO     | ready for new job
[2025-10-12 05:58:58] 2025-10-12 03:58:27,013 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 05:58:58] 2025-10-12 03:58:27,013 | INFO     | ***************************************
[2025-10-12 05:58:58] 2025-10-12 03:58:27,013 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 05:58:58] 2025-10-12 03:58:27,014 | INFO     | ***************************************
[2025-10-12 05:58:58] 2025-10-12 03:58:27,014 | INFO     | 
[2025-10-12 05:58:58] 2025-10-12 03:58:27,014 | INFO     | architecture information:
[2025-10-12 05:58:58] 2025-10-12 03:58:27,014 | INFO     | executing command: cat /etc/os-release
[2025-10-12 05:58:58] 2025-10-12 03:58:27,028 | INFO     | cat /etc/os-release:
[2025-10-12 05:58:58] NAME="CentOS Linux"
[2025-10-12 05:58:58] VERSION="7 (Core)"
[2025-10-12 05:58:58] ID="centos"
[2025-10-12 05:58:58] ID_LIKE="rhel fedora"
[2025-10-12 05:58:58] VERSION_ID="7"
[2025-10-12 05:58:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 05:58:58] ANSI_COLOR="0;31"
[2025-10-12 05:58:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 05:58:58] HOME_URL="https://www.centos.org/"
[2025-10-12 05:58:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 05:58:58] 
[2025-10-12 05:58:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 05:58:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 05:58:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 05:58:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 05:58:58] 
[2025-10-12 05:58:58] 2025-10-12 03:58:27,029 | INFO     | ***************************************
[2025-10-12 05:58:58] 2025-10-12 03:58:27,532 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 05:58:58] 2025-10-12 03:58:27,549 | INFO     | sufficient remaining disk space (327930609664 B)
[2025-10-12 05:58:58] 2025-10-12 03:58:27,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 05:58:58] 2025-10-12 03:58:27,550 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 05:58:58] 2025-10-12 03:58:27,550 | INFO     | update_server=False
[2025-10-12 05:58:58] 2025-10-12 03:58:27,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 05:58:58] 2025-10-12 03:58:27,550 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:58:58] 2025-10-12 03:58:27,550 | INFO     | aborting loop
[2025-10-12 05:58:58] 2025-10-12 03:58:27,550 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 05:58:58] 2025-10-12 03:58:27,830 | INFO     | all job control threads have been joined
[2025-10-12 05:58:58] 2025-10-12 03:58:27,852 | INFO     | all data control threads have been joined
[2025-10-12 05:58:58] 2025-10-12 03:58:28,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 05:58:58] 2025-10-12 03:58:28,555 | INFO     | [job] job monitor thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:28,556 | INFO     | [job] retrieve thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:28,556 | INFO     | [job] queue monitor thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:28,588 | INFO     | all payload control threads have been joined
[2025-10-12 05:58:58] 2025-10-12 03:58:28,708 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:28,836 | INFO     | [job] control thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:28,858 | INFO     | [data] control thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:28,865 | INFO     | [data] copytool_in thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:29,111 | INFO     | [payload] failed_post thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:29,591 | INFO     | [job] validate thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:29,593 | INFO     | [payload] control thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:29,628 | INFO     | [payload] validate_post thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:29,676 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:29,787 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:30,318 | INFO     | [data] copytool_out thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:30,506 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 05:58:58] 2025-10-12 03:58:34,513 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:37,615 | INFO     | job.realtimelogging is not enabled
[2025-10-12 05:58:58] 2025-10-12 03:58:38,621 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 05:58:58] 2025-10-12 03:58:51,091 | INFO     | [monitor] cgroup control has ended
[2025-10-12 05:58:58] 2025-10-12 03:58:52,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140226124678976)>', '<ExcThread(monitor, started 140224885671680)>']
[2025-10-12 05:58:58] 2025-10-12 03:58:57,184 | INFO     | all workflow threads have been joined
[2025-10-12 05:58:58] 2025-10-12 03:58:57,184 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 05:58:58] 2025-10-12 03:58:57,184 | INFO     | traces error code: 0
[2025-10-12 05:58:58] 2025-10-12 03:58:57,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 05:58:58] 2025-10-12 03:58:57,829 | INFO     | PID=3433076 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 05:58:58] 2025-10-12 03:58:57,829 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 05:58:58] 2025-10-12 03:58:57,829 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 05:58:58] 2025-10-12 03:58:57,829 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 05:58:58] 2025-10-12 03:58:57,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 05:58:58] 2025-10-12 03:58:57,829 | INFO     | [monitor] control thread has ended
[2025-10-12 05:58:58] 2025-10-12 03:58:57,905 [wrapper] ==== pilot stdout END ====
[2025-10-12 05:58:58] 2025-10-12 03:58:57,909 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 05:58:58] 2025-10-12 03:58:57,912 [wrapper] pilotpid: 3433076
[2025-10-12 05:58:58] 2025-10-12 03:58:57,917 [wrapper] Pilot exit status: 0
[2025-10-12 05:58:58] 2025-10-12 03:58:57,929 [wrapper] pandaids: 6838453264
[2025-10-12 05:58:58] 2025-10-12 03:58:57,951 [wrapper] cleanup supervisor_pilot 3449764 3433077
[2025-10-12 05:58:58] 2025-10-12 03:58:57,955 [wrapper] Test setup, not cleaning
[2025-10-12 05:58:58] 2025-10-12 03:58:57,959 [wrapper] apfmon messages muted
[2025-10-12 05:58:58] 2025-10-12 03:58:57,962 [wrapper] ==== wrapper stdout END ====
[2025-10-12 05:58:58] 2025-10-12 03:58:57,966 [wrapper] ==== wrapper stderr END ====
[2025-10-12 05:58:58]  *** Error codes and diagnostics ***
[2025-10-12 05:58:58]     "exeErrorCode": 0,
[2025-10-12 05:58:58]     "exeErrorDiag": "",
[2025-10-12 05:58:58]     "pilotErrorCode": 0,
[2025-10-12 05:58:58]     "pilotErrorDiag": "",
[2025-10-12 05:58:58]  *** Listing of results directory ***
[2025-10-12 05:58:58] total 409672
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc    557409 Oct 11 16:01 pilot3.tar.gz
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc      5112 Oct 11 16:12 queuedata.json
[2025-10-12 05:58:58] -rwx------ 1 boinc boinc     36292 Oct 11 16:13 runpilot2-wrapper.sh
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc       100 Oct 12 04:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 05:58:58] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 04:49 run_atlas
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc       105 Oct 12 04:49 job.xml
[2025-10-12 05:58:58] -rw-r--r-- 2 boinc boinc 222550417 Oct 12 04:49 EVNT.46676267._002375.pool.root.1
[2025-10-12 05:58:58] -rw-r--r-- 2 boinc boinc    569678 Oct 12 04:49 input.tar.gz
[2025-10-12 05:58:58] -rw-r--r-- 2 boinc boinc     15120 Oct 12 04:49 start_atlas.sh
[2025-10-12 05:58:58] drwxrwx--x 2 boinc boinc      4096 Oct 12 04:49 shared
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc         0 Oct 12 04:49 boinc_setup_complete
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc      6377 Oct 12 04:49 init_data.xml
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc         0 Oct 12 04:49 boinc_lockfile
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc      2548 Oct 12 04:49 pandaJob.out
[2025-10-12 05:58:58] -rw------- 1 boinc boinc    975496 Oct 12 04:49 agis_schedconf.cvmfs.json
[2025-10-12 05:58:58] -rw------- 1 boinc boinc   1560580 Oct 12 04:49 agis_ddmendpoints.agis.ALL.json
[2025-10-12 05:58:58] drwx------ 5 boinc boinc      4096 Oct 12 04:49 pilot3
[2025-10-12 05:58:58] -rw------- 1 boinc boinc 191346295 Oct 12 05:58 HITS.46676269._059124.pool.root.1
[2025-10-12 05:58:58] -rw------- 1 boinc boinc        95 Oct 12 05:58 pilot_heartbeat.json
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc       530 Oct 12 05:58 boinc_task_state.xml
[2025-10-12 05:58:58] -rw------- 1 boinc boinc      1022 Oct 12 05:58 memory_monitor_summary.json
[2025-10-12 05:58:58] -rw------- 1 boinc boinc    242416 Oct 12 05:58 log.46676269._059124.job.log.tgz.1
[2025-10-12 05:58:58] -rw------- 1 boinc boinc      7768 Oct 12 05:58 heartbeat.json
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc      8192 Oct 12 05:58 boinc_mmap_file
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc        27 Oct 12 05:58 wrapper_checkpoint.txt
[2025-10-12 05:58:58] -rw------- 1 boinc boinc       747 Oct 12 05:58 pilotlog.txt
[2025-10-12 05:58:58] -rw------- 1 boinc boinc    614296 Oct 12 05:58 log.46676269._059124.job.log.1
[2025-10-12 05:58:58] -rw------- 1 boinc boinc       357 Oct 12 05:58 output.list
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc       620 Oct 12 05:58 runtime_log
[2025-10-12 05:58:58] -rw------- 1 boinc boinc    880640 Oct 12 05:58 result.tar.gz
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc      8782 Oct 12 05:58 runtime_log.err
[2025-10-12 05:58:58] -rw------- 1 boinc boinc       659 Oct 12 05:58 GCkNDmtWpR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmV3RMDmDtxiPo.diag
[2025-10-12 05:58:58] -rw-r--r-- 1 boinc boinc     10802 Oct 12 05:58 stderr.txt
[2025-10-12 05:58:58] HITS file was successfully produced:
[2025-10-12 05:58:58] -rw------- 1 boinc boinc 191346295 Oct 12 05:58 shared/HITS.pool.root.1
[2025-10-12 05:58:58]  *** Contents of shared directory: ***
[2025-10-12 05:58:58] total 405644
[2025-10-12 05:58:58] -rw-r--r-- 2 boinc boinc 222550417 Oct 12 04:49 ATLAS.root_0
[2025-10-12 05:58:58] -rw-r--r-- 2 boinc boinc    569678 Oct 12 04:49 input.tar.gz
[2025-10-12 05:58:58] -rw-r--r-- 2 boinc boinc     15120 Oct 12 04:49 start_atlas.sh
[2025-10-12 05:58:58] -rw------- 1 boinc boinc 191346295 Oct 12 05:58 HITS.pool.root.1
[2025-10-12 05:58:58] -rw------- 1 boinc boinc    880640 Oct 12 05:58 result.tar.gz
05:58:59 (3429284): run_atlas exited; CPU time 15503.593308
05:58:59 (3429284): called boinc_finish(0)

</stderr_txt>
]]>

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