Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
13:29:34 (1641403): wrapper (7.7.26015): starting
13:29:34 (1641403): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 14:58:00] Arguments: --nthreads 4
[2025-10-11 14:58:00] Threads: 4
[2025-10-11 14:58:00] Checking for CVMFS
[2025-10-11 14:58:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 14:58:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 14:58:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 14:58:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 14:58:00] 2.13.2.0 314650 1493 51352 151594 0 61 1876496 4096001 1834 130560 0 3207379 99.793 719229 931 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-11 14:58:00] CVMFS is ok
[2025-10-11 14:58:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 14:58:00] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-11 14:58:00] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-11 14:58:00] Further information can be found at the LHC@home message board.
[2025-10-11 14:58:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 14:58:00] Checking for apptainer binary...
[2025-10-11 14:58:00] apptainer is not installed, using version from CVMFS
[2025-10-11 14:58:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 14:58:00] X670EPG
[2025-10-11 14:58:00] apptainer works
[2025-10-11 14:58:00] Set ATHENA_PROC_NUMBER=4
[2025-10-11 14:58:00] Set ATHENA_CORE_NUMBER=4
[2025-10-11 14:58:00] Starting ATLAS job with PandaID=6838230422
[2025-10-11 14:58:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/home/x670epg/boinc3/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 14:58:00]  *** The last 200 lines of the pilot log: ***
[2025-10-11 14:58:00] 2025-10-11 20:57:08,647 | INFO     | executing command: /usr/bin/env mv /home/x670epg/boinc3/slots/1/PanDA_Pilot-6838230422/log.46676269._054370.job.log.tgz.1 /home/x670epg/boinc3/slots/1/log.46676269
[2025-10-11 14:58:00] 2025-10-11 20:57:08,659 | INFO     | adding to output.list: log.46676269._054370.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/28/log.46676269._054370.job.log.tg
[2025-10-11 14:58:00] 2025-10-11 20:57:08,659 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 14:58:00] 2025-10-11 20:57:08,659 | INFO     | summary of transferred files:
[2025-10-11 14:58:00] 2025-10-11 20:57:08,659 | INFO     |  -- lfn=log.46676269._054370.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 14:58:00] 2025-10-11 20:57:08,659 | INFO     | stage-out finished correctly
[2025-10-11 14:58:00] 2025-10-11 20:57:08,712 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 14:58:00] 2025-10-11 20:57:09,647 | INFO     | job 6838230422 has state=finished
[2025-10-11 14:58:00] 2025-10-11 20:57:09,647 | INFO     | preparing for final server update for job 6838230422 in state='finished'
[2025-10-11 14:58:00] 2025-10-11 20:57:09,647 | INFO     | this job has now completed (state=finished)
[2025-10-11 14:58:00] 2025-10-11 20:57:09,647 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 14:58:00] 2025-10-11 20:57:09,647 | INFO     | log transfer has been attempted: DONE
[2025-10-11 14:58:00] 2025-10-11 20:57:09,647 | INFO     | job 6838230422 has finished - writing final server update
[2025-10-11 14:58:00] 2025-10-11 20:57:09,647 | INFO     | total number of processed events: 400 (read)
[2025-10-11 14:58:00] 2025-10-11 20:57:09,648 | INFO     | executing command: lscpu
[2025-10-11 14:58:00] 2025-10-11 20:57:09,667 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 14:58:00] 2025-10-11 20:57:09,974 | INFO     | time since job start (5245s) is within the limit (172800.0s)
[2025-10-11 14:58:00] 2025-10-11 20:57:10,600 | WARNING  | process 1651888 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 14:58:00] 2025-10-11 20:57:10,601 | INFO     | using path: /home/x670epg/boinc3/slots/1/PanDA_Pilot-6838230422/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 14:58:00] 2025-10-11 20:57:10,601 | INFO     | using path: /home/x670epg/boinc3/slots/1/PanDA_Pilot-6838230422/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 14:58:00] 2025-10-11 20:57:10,601 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-11 14:58:00] 2025-10-11 20:57:10,601 | WARNING  | maxPSS not found in memory monitor output
[2025-10-11 14:58:00] 2025-10-11 20:57:10,602 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2520954 B
[2025-10-11 14:58:00] 2025-10-11 20:57:10,602 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16044 B
[2025-10-11 14:58:00] 2025-10-11 20:57:10,602 | INFO     | executing command: df -mP /home/x670epg/boinc3/slots/1
[2025-10-11 14:58:00] 2025-10-11 20:57:11,979 | INFO     | time since job start (5247s) is within the limit (172800.0s)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,191 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 14:58:00] 2025-10-11 20:57:12,197 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4513.67003125
[2025-10-11 14:58:00] 2025-10-11 20:57:12,201 | INFO     | using path: /home/x670epg/boinc3/slots/1/PanDA_Pilot-6838230422/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,201 | INFO     | extracted standard info from prmon json
[2025-10-11 14:58:00] 2025-10-11 20:57:12,201 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 14:58:00] 2025-10-11 20:57:12,201 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 14:58:00] 2025-10-11 20:57:12,201 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 14:58:00] 2025-10-11 20:57:12,201 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 14:58:00] 2025-10-11 20:57:12,203 | INFO     | fitting pss+swap vs Time
[2025-10-11 14:58:00] 2025-10-11 20:57:12,203 | INFO     | sufficient remaining disk space (415072518144 B)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,203 | INFO     | sum of square deviations: 152858680.0
[2025-10-11 14:58:00] 2025-10-11 20:57:12,203 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | sum of deviations: -16927921144.0
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | mean x: 1760213689.0
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | mean y: 2506480.1772151897
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | -- intersect: 194932611358.62665
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | intersect: 194932611358.62665
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | chi2: 0.11196803634599763
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | -- intersect: 194932611358.62665
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | current memory leak: -110.74 B/s (using 79 data points, chi2=0.11)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | could have reported an average CPU frequency of 4549 MHz (6 samples)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | ..............................
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | . Timing measurements:
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | . get job = 0 s
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | . initial setup = 4 s
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | . payload setup = 3 s
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | . stage-in = 0 s
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | . payload execution = 5222 s
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | . stage-out = 0 s
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | . log creation = 0 s
[2025-10-11 14:58:00] 2025-10-11 20:57:12,204 | INFO     | ..............................
[2025-10-11 14:58:00] 2025-10-11 20:57:12,245 | INFO     | 
[2025-10-11 14:58:00] 2025-10-11 20:57:12,245 | INFO     | job summary report
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | --------------------------------------------------
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | PanDA job id: 6838230422
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | task id: 46676269
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | errors: (none)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | pilot state: finished 
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | transexitcode: 0
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | exeerrorcode: 0
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | exeerrordiag: 
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | exitcode: 0
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | exitmsg: OK
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | cpuconsumptiontime: 20176 s
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | nevents: 400
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | neventsw: 0
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | pid: 1651888
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | pgrp: 1651888
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | corecount: 4
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | event service: False
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | sizes: {0: 2348636, 1: 2348891, 4: 2349153, 11: 2349181, 5229: 2375763, 5230: 2384773, 5231: 2384957, 5234: 2385151}
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | --------------------------------------------------
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | 
[2025-10-11 14:58:00] 2025-10-11 20:57:12,246 | INFO     | executing command: ls -lF /home/x670epg/boinc3/slots/1
[2025-10-11 14:58:00] 2025-10-11 20:57:12,251 | INFO     | size of work directory /home/x670epg/boinc3/slots/1/PanDA_Pilot-6838230422: 2822364 B (within 2537553920 B limit)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,251 | INFO     | pfn file=/home/x670epg/boinc3/slots/1/PanDA_Pilot-6838230422/HITS.46676269._054370.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,251 | INFO     | total size of present files: 0 B (workdir size: 2822364 B)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,251 | INFO     | output file size check: skipping output file /home/x670epg/boinc3/slots/1/PanDA_Pilot-6838230422/HITS.46676269._054370.pool.root.1 since it does not exist
[2025-10-11 14:58:00] 2025-10-11 20:57:12,264 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,264 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,264 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,264 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,264 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,264 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,264 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,264 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,264 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,264 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | job 6838230422 has completed (purged errors)
[2025-10-11 14:58:00] 2025-10-11 20:57:12,265 | INFO     | overall cleanup function is called
[2025-10-11 14:58:00] 2025-10-11 20:57:12,348 | INFO     | number of running child processes to parent process 1651888: 1
[2025-10-11 14:58:00] 2025-10-11 20:57:12,348 | INFO     | maximum number of monitored processes: 6
[2025-10-11 14:58:00] 2025-10-11 20:57:12,348 | INFO     | aborting job monitoring since job object (job id=6838230422) has expired
[2025-10-11 14:58:00] 2025-10-11 20:57:13,076 | INFO     | PID=1645242 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 14:58:00] 2025-10-11 20:57:13,076 | INFO     | .. there are 3 such processes running
[2025-10-11 14:58:00] 2025-10-11 20:57:13,272 | INFO     | --- collectZombieJob: --- 10, [1651888]
[2025-10-11 14:58:00] 2025-10-11 20:57:13,272 | INFO     | zombie collector waiting for pid 1651888
[2025-10-11 14:58:00] 2025-10-11 20:57:13,272 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 14:58:00] 2025-10-11 20:57:13,272 | INFO     | collected zombie processes
[2025-10-11 14:58:00] 2025-10-11 20:57:13,272 | INFO     | will attempt to kill all subprocesses of pid=1651888
[2025-10-11 14:58:00] 2025-10-11 20:57:13,360 | INFO     | process IDs to be killed: [1651888] (in reverse order)
[2025-10-11 14:58:00] 2025-10-11 20:57:13,416 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 14:58:00] 2025-10-11 20:57:13,416 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 14:58:00] 2025-10-11 20:57:13,419 | INFO     | did not find any defunct processes belonging to 1651888
[2025-10-11 14:58:00] 2025-10-11 20:57:13,423 | INFO     | did not find any defunct processes belonging to 1651888
[2025-10-11 14:58:00] 2025-10-11 20:57:13,423 | INFO     | ready for new job
[2025-10-11 14:58:00] 2025-10-11 20:57:13,423 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 14:58:00] 2025-10-11 20:57:13,424 | INFO     | ***************************************
[2025-10-11 14:58:00] 2025-10-11 20:57:13,424 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 14:58:00] 2025-10-11 20:57:13,424 | INFO     | ***************************************
[2025-10-11 14:58:00] 2025-10-11 20:57:13,425 | INFO     | 
[2025-10-11 14:58:00] 2025-10-11 20:57:13,426 | INFO     | architecture information:
[2025-10-11 14:58:00] 2025-10-11 20:57:13,426 | INFO     | executing command: cat /etc/os-release
[2025-10-11 14:58:00] 2025-10-11 20:57:13,439 | INFO     | cat /etc/os-release:
[2025-10-11 14:58:00] NAME="CentOS Linux"
[2025-10-11 14:58:00] VERSION="7 (Core)"
[2025-10-11 14:58:00] ID="centos"
[2025-10-11 14:58:00] ID_LIKE="rhel fedora"
[2025-10-11 14:58:00] VERSION_ID="7"
[2025-10-11 14:58:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 14:58:00] ANSI_COLOR="0;31"
[2025-10-11 14:58:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 14:58:00] HOME_URL="https://www.centos.org/"
[2025-10-11 14:58:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 14:58:00] 
[2025-10-11 14:58:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 14:58:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 14:58:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 14:58:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 14:58:00] 
[2025-10-11 14:58:00] 2025-10-11 20:57:13,439 | INFO     | ***************************************
[2025-10-11 14:58:00] 2025-10-11 20:57:13,942 | INFO     | executing command: df -mP /home/x670epg/boinc3/slots/1
[2025-10-11 14:58:00] 2025-10-11 20:57:13,955 | INFO     | sufficient remaining disk space (415075663872 B)
[2025-10-11 14:58:00] 2025-10-11 20:57:13,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 14:58:00] 2025-10-11 20:57:13,955 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 14:58:00] 2025-10-11 20:57:13,955 | INFO     | update_server=False
[2025-10-11 14:58:00] 2025-10-11 20:57:13,955 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 14:58:00] 2025-10-11 20:57:13,955 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:58:00] 2025-10-11 20:57:13,955 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:58:00] 2025-10-11 20:57:13,955 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-11 14:58:00] 2025-10-11 20:57:13,955 | INFO     | aborting loop
[2025-10-11 14:58:00] 2025-10-11 20:57:13,956 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 14:58:00] 2025-10-11 20:57:13,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 14:58:00] 2025-10-11 20:57:13,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 14:58:00] 2025-10-11 20:57:14,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 14:58:00] 2025-10-11 20:57:14,504 | INFO     | all data control threads have been joined
[2025-10-11 14:58:00] 2025-10-11 20:57:14,757 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 14:58:00] 2025-10-11 20:57:14,960 | INFO     | [job] retrieve thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:14,961 | INFO     | [job] queue monitor thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:14,961 | INFO     | [job] job monitor thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:15,237 | INFO     | all job control threads have been joined
[2025-10-11 14:58:00] 2025-10-11 20:57:15,390 | INFO     | all payload control threads have been joined
[2025-10-11 14:58:00] 2025-10-11 20:57:15,509 | INFO     | [data] control thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:15,744 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:15,999 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:16,220 | INFO     | [data] copytool_out thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:16,242 | INFO     | [job] control thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:16,271 | INFO     | [job] validate thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:16,283 | INFO     | [payload] validate_post thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:16,309 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:16,390 | INFO     | [payload] failed_post thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:16,395 | INFO     | [payload] control thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:16,396 | INFO     | [data] copytool_in thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:16,453 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:18,762 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 14:58:00] 2025-10-11 20:57:52,479 | INFO     | [monitor] cgroup control has ended
[2025-10-11 14:58:00] 2025-10-11 20:57:54,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126643901896512)>', '<ExcThread(monitor, started 126643498649344)>']
[2025-10-11 14:58:00] 2025-10-11 20:57:54,128 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 14:58:00] 2025-10-11 20:57:54,128 | INFO     | [monitor] control thread has ended
[2025-10-11 14:58:00] 2025-10-11 20:57:59,059 | INFO     | all workflow threads have been joined
[2025-10-11 14:58:00] 2025-10-11 20:57:59,059 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 14:58:00] 2025-10-11 20:57:59,059 | INFO     | traces error code: 0
[2025-10-11 14:58:00] 2025-10-11 20:57:59,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 14:58:00] 2025-10-11 20:57:59,152 [wrapper] ==== pilot stdout END ====
[2025-10-11 14:58:00] 2025-10-11 20:57:59,154 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 14:58:00] 2025-10-11 20:57:59,156 [wrapper] pilotpid: 1645242
[2025-10-11 14:58:00] 2025-10-11 20:57:59,159 [wrapper] Pilot exit status: 0
[2025-10-11 14:58:00] 2025-10-11 20:57:59,166 [wrapper] pandaids: 6838230422
[2025-10-11 14:58:00] 2025-10-11 20:57:59,193 [wrapper] cleanup supervisor_pilot 1720356 1645243
[2025-10-11 14:58:00] 2025-10-11 20:57:59,195 [wrapper] Test setup, not cleaning
[2025-10-11 14:58:00] 2025-10-11 20:57:59,198 [wrapper] apfmon messages muted
[2025-10-11 14:58:00] 2025-10-11 20:57:59,200 [wrapper] ==== wrapper stdout END ====
[2025-10-11 14:58:00] 2025-10-11 20:57:59,203 [wrapper] ==== wrapper stderr END ====
[2025-10-11 14:58:00]  *** Error codes and diagnostics ***
[2025-10-11 14:58:00]     "exeErrorCode": 0,
[2025-10-11 14:58:00]     "exeErrorDiag": "",
[2025-10-11 14:58:00]     "pilotErrorCode": 0,
[2025-10-11 14:58:00]     "pilotErrorDiag": "",
[2025-10-11 14:58:00]  *** Listing of results directory ***
[2025-10-11 14:58:00] total 411904
[2025-10-11 14:58:00] -rw-r--r-- 1 x670epg x670epg    557409 Oct 11 02:32 pilot3.tar.gz
[2025-10-11 14:58:00] -rw-r--r-- 1 x670epg x670epg      5112 Oct 11 02:38 queuedata.json
[2025-10-11 14:58:00] -rwx------ 1 x670epg x670epg     36292 Oct 11 02:38 runpilot2-wrapper.sh
[2025-10-11 14:58:00] -rw-rw-r-- 1 x670epg x670epg       100 Oct 11 13:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 14:58:00] -rwxr-xr-x 1 x670epg x670epg      7986 Oct 11 13:29 run_atlas
[2025-10-11 14:58:00] -rw-rw-r-- 1 x670epg x670epg       105 Oct 11 13:29 job.xml
[2025-10-11 14:58:00] -rw-rw-r-- 1 x670epg x670epg      9975 Oct 11 13:29 init_data.xml
[2025-10-11 14:58:00] -rw-r--r-- 2 x670epg x670epg 221970536 Oct 11 13:29 EVNT.46676267._002181.pool.root.1
[2025-10-11 14:58:00] -rw-r--r-- 2 x670epg x670epg     15120 Oct 11 13:29 start_atlas.sh
[2025-10-11 14:58:00] drwxrwx--x 2 x670epg x670epg      4096 Oct 11 13:29 shared
[2025-10-11 14:58:00] -rw-r--r-- 2 x670epg x670epg    569678 Oct 11 13:29 input.tar.gz
[2025-10-11 14:58:00] -rw-rw-r-- 1 x670epg x670epg       112 Oct 11 13:29 stderr.txt
[2025-10-11 14:58:00] -rw-rw-r-- 1 x670epg x670epg         0 Oct 11 13:29 boinc_lockfile
[2025-10-11 14:58:00] -rw-rw-r-- 1 x670epg x670epg      2550 Oct 11 13:29 pandaJob.out
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg    975512 Oct 11 13:29 agis_schedconf.cvmfs.json
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg   1560580 Oct 11 13:29 agis_ddmendpoints.agis.ALL.json
[2025-10-11 14:58:00] drwx------ 5 x670epg x670epg      4096 Oct 11 13:29 pilot3
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg        95 Oct 11 14:56 pilot_heartbeat.json
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg 193790062 Oct 11 14:56 HITS.46676269._054370.pool.root.1
[2025-10-11 14:58:00] -rw-rw-r-- 1 x670epg x670epg       529 Oct 11 14:57 boinc_task_state.xml
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg      1021 Oct 11 14:57 memory_monitor_summary.json
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg    279210 Oct 11 14:57 log.46676269._054370.job.log.tgz.1
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg      7740 Oct 11 14:57 heartbeat.json
[2025-10-11 14:58:00] -rw-rw-r-- 1 x670epg x670epg      8192 Oct 11 14:57 boinc_mmap_file
[2025-10-11 14:58:00] -rw-rw-r-- 1 x670epg x670epg        27 Oct 11 14:57 wrapper_checkpoint.txt
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg      4559 Oct 11 14:57 pilotlog.txt
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg    789016 Oct 11 14:57 log.46676269._054370.job.log.1
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg       357 Oct 11 14:57 output.list
[2025-10-11 14:58:00] -rw-rw-r-- 1 x670epg x670epg       620 Oct 11 14:57 runtime_log
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg   1085440 Oct 11 14:57 result.tar.gz
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg       655 Oct 11 14:57 GHILDmCIkR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXsfNDmZYKdGo.diag
[2025-10-11 14:58:00] -rw-rw-r-- 1 x670epg x670epg      8777 Oct 11 14:57 runtime_log.err
[2025-10-11 14:58:00] HITS file was successfully produced:
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg 193790062 Oct 11 14:56 shared/HITS.pool.root.1
[2025-10-11 14:58:00]  *** Contents of shared directory: ***
[2025-10-11 14:58:00] total 407668
[2025-10-11 14:58:00] -rw-r--r-- 2 x670epg x670epg 221970536 Oct 11 13:29 ATLAS.root_0
[2025-10-11 14:58:00] -rw-r--r-- 2 x670epg x670epg     15120 Oct 11 13:29 start_atlas.sh
[2025-10-11 14:58:00] -rw-r--r-- 2 x670epg x670epg    569678 Oct 11 13:29 input.tar.gz
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg 193790062 Oct 11 14:56 HITS.pool.root.1
[2025-10-11 14:58:00] -rw------- 1 x670epg x670epg   1085440 Oct 11 14:57 result.tar.gz
14:58:00 (1641403): run_atlas exited; CPU time 20197.403035
14:58:00 (1641403): called boinc_finish(0)

</stderr_txt>
]]>

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