Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:56:07 (2085561): wrapper (7.7.26015): starting
06:56:07 (2085561): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 06:56:07] Arguments: --nthreads 2
[2025-10-12 06:56:07] Threads: 2
[2025-10-12 06:56:07] Checking for CVMFS
[2025-10-12 06:56:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:56:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:56:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:56:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:56:08] 2.9.2.0 1226200 3755 59104 151608 3 56 27841757 36864000 0 130560 0 2259192 99.988 129142 1197 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 06:56:08] CVMFS is ok
[2025-10-12 06:56:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 06:56:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 06:56:08] Further information can be found at the LHC@home message board.
[2025-10-12 06:56:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:56:08] Checking for apptainer binary...
[2025-10-12 06:56:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 06:56:08] Running /usr/bin/apptainer --version
[2025-10-12 06:56:08] apptainer version 1.4.1-1.1
[2025-10-12 06:56:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:56:08] thA337
[2025-10-12 06:56:08] apptainer works
[2025-10-12 06:56:08] Set ATHENA_PROC_NUMBER=2
[2025-10-12 06:56:08] Set ATHENA_CORE_NUMBER=2
[2025-10-12 06:56:08] Starting ATLAS job with PandaID=6838453312
[2025-10-12 06:56:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 08:54:38]  *** The last 200 lines of the pilot log: ***
[2025-10-12 08:54:38] 2025-10-12 06:53:42,140 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,140 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,140 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,140 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,140 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,140 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,140 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,140 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,140 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,140 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,141 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,141 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,141 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 08:54:38] 2025-10-12 06:53:42,141 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,141 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 08:54:38] 2025-10-12 06:53:42,141 | INFO     | job 6838453312 has completed (purged errors)
[2025-10-12 08:54:38] 2025-10-12 06:53:42,141 | INFO     | overall cleanup function is called
[2025-10-12 08:54:38] 2025-10-12 06:53:43,147 | INFO     | --- collectZombieJob: --- 10, [2095677]
[2025-10-12 08:54:38] 2025-10-12 06:53:43,147 | INFO     | zombie collector waiting for pid 2095677
[2025-10-12 08:54:38] 2025-10-12 06:53:43,148 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 08:54:38] 2025-10-12 06:53:43,148 | INFO     | collected zombie processes
[2025-10-12 08:54:38] 2025-10-12 06:53:43,148 | INFO     | will attempt to kill all subprocesses of pid=2095677
[2025-10-12 08:54:38] 2025-10-12 06:53:43,181 | INFO     | process IDs to be killed: [2095677] (in reverse order)
[2025-10-12 08:54:38] 2025-10-12 06:53:43,201 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 08:54:38] 2025-10-12 06:53:43,202 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 08:54:38] 2025-10-12 06:53:43,202 | INFO     | did not find any defunct processes belonging to 2095677
[2025-10-12 08:54:38] 2025-10-12 06:53:43,203 | INFO     | did not find any defunct processes belonging to 2095677
[2025-10-12 08:54:38] 2025-10-12 06:53:43,203 | INFO     | ready for new job
[2025-10-12 08:54:38] 2025-10-12 06:53:43,203 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 08:54:38] 2025-10-12 06:53:43,203 | INFO     | ***************************************
[2025-10-12 08:54:38] 2025-10-12 06:53:43,204 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 08:54:38] 2025-10-12 06:53:43,204 | INFO     | ***************************************
[2025-10-12 08:54:38] 2025-10-12 06:53:43,204 | INFO     | 
[2025-10-12 08:54:38] 2025-10-12 06:53:43,204 | INFO     | architecture information:
[2025-10-12 08:54:38] 2025-10-12 06:53:43,204 | INFO     | executing command: cat /etc/os-release
[2025-10-12 08:54:38] 2025-10-12 06:53:43,213 | INFO     | cat /etc/os-release:
[2025-10-12 08:54:38] NAME="CentOS Linux"
[2025-10-12 08:54:38] VERSION="7 (Core)"
[2025-10-12 08:54:38] ID="centos"
[2025-10-12 08:54:38] ID_LIKE="rhel fedora"
[2025-10-12 08:54:38] VERSION_ID="7"
[2025-10-12 08:54:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 08:54:38] ANSI_COLOR="0;31"
[2025-10-12 08:54:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 08:54:38] HOME_URL="https://www.centos.org/"
[2025-10-12 08:54:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 08:54:38] 
[2025-10-12 08:54:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 08:54:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 08:54:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 08:54:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 08:54:38] 
[2025-10-12 08:54:38] 2025-10-12 06:53:43,213 | INFO     | ***************************************
[2025-10-12 08:54:38] 2025-10-12 06:53:43,716 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 08:54:38] 2025-10-12 06:53:43,728 | INFO     | sufficient remaining disk space (483277144064 B)
[2025-10-12 08:54:38] 2025-10-12 06:53:43,728 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 08:54:38] 2025-10-12 06:53:43,728 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 08:54:38] 2025-10-12 06:53:43,728 | INFO     | update_server=False
[2025-10-12 08:54:38] 2025-10-12 06:53:43,728 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 08:54:38] 2025-10-12 06:53:43,728 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 08:54:38] 2025-10-12 06:53:43,728 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 08:54:38] 2025-10-12 06:53:43,728 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 08:54:38] 2025-10-12 06:53:43,728 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 08:54:38] 2025-10-12 06:53:43,884 | INFO     | all payload control threads have been joined
[2025-10-12 08:54:38] 2025-10-12 06:53:43,950 | INFO     | all job control threads have been joined
[2025-10-12 08:54:38] 2025-10-12 06:53:44,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:54:38] 2025-10-12 06:53:44,113 | INFO     | aborting loop
[2025-10-12 08:54:38] 2025-10-12 06:53:44,360 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 08:54:38] 2025-10-12 06:53:44,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 08:54:38] 2025-10-12 06:53:44,517 | INFO     | all data control threads have been joined
[2025-10-12 08:54:38] 2025-10-12 06:53:44,734 | INFO     | [job] retrieve thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:44,740 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:44,890 | INFO     | [payload] control thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:44,956 | INFO     | [job] control thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:45,119 | INFO     | [job] job monitor thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:45,192 | INFO     | [data] copytool_in thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:45,467 | INFO     | [payload] validate_post thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:45,523 | INFO     | [data] control thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:45,674 | INFO     | [payload] failed_post thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:46,037 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:46,085 | INFO     | [job] validate thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:46,155 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:46,508 | INFO     | [data] copytool_out thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:46,684 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:54:38] 2025-10-12 06:53:47,690 | INFO     | [job] queue monitor thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:48,366 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:53:53,876 | INFO     | job.realtimelogging is not enabled
[2025-10-12 08:54:38] 2025-10-12 06:53:54,881 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 08:54:38] 2025-10-12 06:54:31,522 | INFO     | [monitor] cgroup control has ended
[2025-10-12 08:54:38] 2025-10-12 06:54:33,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140415309907776)>', '<ExcThread(monitor, started 140414803756800)>']
[2025-10-12 08:54:38] 2025-10-12 06:54:33,987 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 08:54:38] 2025-10-12 06:54:33,988 | INFO     | [monitor] control thread has ended
[2025-10-12 08:54:38] 2025-10-12 06:54:38,524 | INFO     | all workflow threads have been joined
[2025-10-12 08:54:38] 2025-10-12 06:54:38,524 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 08:54:38] 2025-10-12 06:54:38,525 | INFO     | traces error code: 0
[2025-10-12 08:54:38] 2025-10-12 06:54:38,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 08:54:38] 2025-10-12 06:54:38,567 [wrapper] ==== pilot stdout END ====
[2025-10-12 08:54:38] 2025-10-12 06:54:38,569 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 08:54:38] 2025-10-12 06:54:38,572 [wrapper] pilotpid: 2089267
[2025-10-12 08:54:38] 2025-10-12 06:54:38,573 [wrapper] Pilot exit status: 0
[2025-10-12 08:54:38] 2025-10-12 06:54:38,579 [wrapper] pandaids: 6838453312
[2025-10-12 08:54:38] 2025-10-12 06:54:38,590 [wrapper] cleanup supervisor_pilot 2109780 2089268
[2025-10-12 08:54:38] 2025-10-12 06:54:38,592 [wrapper] Test setup, not cleaning
[2025-10-12 08:54:38] 2025-10-12 06:54:38,594 [wrapper] apfmon messages muted
[2025-10-12 08:54:38] 2025-10-12 06:54:38,596 [wrapper] ==== wrapper stdout END ====
[2025-10-12 08:54:38] 2025-10-12 06:54:38,598 [wrapper] ==== wrapper stderr END ====
[2025-10-12 08:54:38]  *** Error codes and diagnostics ***
[2025-10-12 08:54:38]     "exeErrorCode": 0,
[2025-10-12 08:54:38]     "exeErrorDiag": "",
[2025-10-12 08:54:38]     "pilotErrorCode": 0,
[2025-10-12 08:54:38]     "pilotErrorDiag": "",
[2025-10-12 08:54:38]  *** Listing of results directory ***
[2025-10-12 08:54:38] total 406932
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc    557409 Oct 11 16:01 pilot3.tar.gz
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc      5112 Oct 11 16:14 queuedata.json
[2025-10-12 08:54:38] -rwx------ 1 boinc boinc     36292 Oct 11 16:14 runpilot2-wrapper.sh
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc       100 Oct 12 06:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 08:54:38] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 06:56 run_atlas
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc       105 Oct 12 06:56 job.xml
[2025-10-12 08:54:38] -rw-r--r-- 2 boinc boinc 222902023 Oct 12 06:56 EVNT.46676267._002377.pool.root.1
[2025-10-12 08:54:38] -rw-r--r-- 2 boinc boinc    569680 Oct 12 06:56 input.tar.gz
[2025-10-12 08:54:38] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:56 start_atlas.sh
[2025-10-12 08:54:38] drwxrwx--x 2 boinc boinc      4096 Oct 12 06:56 shared
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:56 boinc_setup_complete
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc      6206 Oct 12 06:56 init_data.xml
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:56 boinc_lockfile
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc      2550 Oct 12 06:56 pandaJob.out
[2025-10-12 08:54:38] -rw------- 1 boinc boinc    975512 Oct 12 06:56 agis_schedconf.cvmfs.json
[2025-10-12 08:54:38] -rw------- 1 boinc boinc   1560580 Oct 12 06:56 agis_ddmendpoints.agis.ALL.json
[2025-10-12 08:54:38] drwx------ 5 boinc boinc      4096 Oct 12 06:56 pilot3
[2025-10-12 08:54:38] -rw------- 1 boinc boinc        95 Oct 12 08:52 pilot_heartbeat.json
[2025-10-12 08:54:38] -rw------- 1 boinc boinc 187317709 Oct 12 08:53 HITS.46676269._059168.pool.root.1
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc       529 Oct 12 08:53 boinc_task_state.xml
[2025-10-12 08:54:38] -rw------- 1 boinc boinc      1030 Oct 12 08:53 memory_monitor_summary.json
[2025-10-12 08:54:38] -rw------- 1 boinc boinc    275877 Oct 12 08:53 log.46676269._059168.job.log.tgz.1
[2025-10-12 08:54:38] -rw------- 1 boinc boinc      7751 Oct 12 08:53 heartbeat.json
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc        27 Oct 12 08:54 wrapper_checkpoint.txt
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc      8192 Oct 12 08:54 boinc_mmap_file
[2025-10-12 08:54:38] -rw------- 1 boinc boinc      4628 Oct 12 08:54 pilotlog.txt
[2025-10-12 08:54:38] -rw------- 1 boinc boinc   1014221 Oct 12 08:54 log.46676269._059168.job.log.1
[2025-10-12 08:54:38] -rw------- 1 boinc boinc       357 Oct 12 08:54 output.list
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc       620 Oct 12 08:54 runtime_log
[2025-10-12 08:54:38] -rw------- 1 boinc boinc   1310720 Oct 12 08:54 result.tar.gz
[2025-10-12 08:54:38] -rw------- 1 boinc boinc       659 Oct 12 08:54 zSyKDm3XpR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7dgNDmF5AcSo.diag
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc      8777 Oct 12 08:54 runtime_log.err
[2025-10-12 08:54:38] -rw-r--r-- 1 boinc boinc     12365 Oct 12 08:54 stderr.txt
[2025-10-12 08:54:38] HITS file was successfully produced:
[2025-10-12 08:54:38] -rw------- 1 boinc boinc 187317709 Oct 12 08:53 shared/HITS.pool.root.1
[2025-10-12 08:54:38]  *** Contents of shared directory: ***
[2025-10-12 08:54:38] total 402472
[2025-10-12 08:54:38] -rw-r--r-- 2 boinc boinc 222902023 Oct 12 06:56 ATLAS.root_0
[2025-10-12 08:54:38] -rw-r--r-- 2 boinc boinc    569680 Oct 12 06:56 input.tar.gz
[2025-10-12 08:54:38] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:56 start_atlas.sh
[2025-10-12 08:54:38] -rw------- 1 boinc boinc 187317709 Oct 12 08:53 HITS.pool.root.1
[2025-10-12 08:54:38] -rw------- 1 boinc boinc   1310720 Oct 12 08:54 result.tar.gz
08:54:40 (2085561): run_atlas exited; CPU time 13608.651011
08:54:40 (2085561): called boinc_finish(0)

</stderr_txt>
]]>

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