Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:33:26 (3292984): wrapper (7.7.26015): starting
06:33:26 (3292984): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 06:33:26] Arguments: --nthreads 4
[2025-10-12 06:33:26] Threads: 4
[2025-10-12 06:33:26] Checking for CVMFS
[2025-10-12 06:33:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:33:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:33:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:33:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:33:26] 2.9.2.0 1822434 3727 95740 151608 2 57 22367505 36864000 0 130560 0 3863019 99.993 130001 961 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 06:33:26] CVMFS is ok
[2025-10-12 06:33:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 06:33:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 06:33:26] Further information can be found at the LHC@home message board.
[2025-10-12 06:33:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:33:26] Checking for apptainer binary...
[2025-10-12 06:33:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 06:33:26] Running /usr/bin/apptainer --version
[2025-10-12 06:33:26] apptainer version 1.4.1-1.1
[2025-10-12 06:33:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:33:26] thA315b
[2025-10-12 06:33:26] apptainer works
[2025-10-12 06:33:26] Set ATHENA_PROC_NUMBER=4
[2025-10-12 06:33:26] Set ATHENA_CORE_NUMBER=4
[2025-10-12 06:33:26] Starting ATLAS job with PandaID=6838366070
[2025-10-12 06:33:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:38:42]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:38:42] 2025-10-12 05:38:11,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,697 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,697 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,697 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,698 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,698 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,698 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:38:42] 2025-10-12 05:38:11,698 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,698 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:38:42] 2025-10-12 05:38:11,698 | INFO     | job 6838366070 has completed (purged errors)
[2025-10-12 07:38:42] 2025-10-12 05:38:11,698 | INFO     | overall cleanup function is called
[2025-10-12 07:38:42] 2025-10-12 05:38:12,704 | INFO     | --- collectZombieJob: --- 10, [3303366]
[2025-10-12 07:38:42] 2025-10-12 05:38:12,705 | INFO     | zombie collector waiting for pid 3303366
[2025-10-12 07:38:42] 2025-10-12 05:38:12,705 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:38:42] 2025-10-12 05:38:12,705 | INFO     | collected zombie processes
[2025-10-12 07:38:42] 2025-10-12 05:38:12,705 | INFO     | will attempt to kill all subprocesses of pid=3303366
[2025-10-12 07:38:42] 2025-10-12 05:38:12,750 | INFO     | process IDs to be killed: [3303366] (in reverse order)
[2025-10-12 07:38:42] 2025-10-12 05:38:12,776 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:38:42] 2025-10-12 05:38:12,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:38:42] 2025-10-12 05:38:12,778 | INFO     | did not find any defunct processes belonging to 3303366
[2025-10-12 07:38:42] 2025-10-12 05:38:12,779 | INFO     | did not find any defunct processes belonging to 3303366
[2025-10-12 07:38:42] 2025-10-12 05:38:12,779 | INFO     | ready for new job
[2025-10-12 07:38:42] 2025-10-12 05:38:12,779 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:38:42] 2025-10-12 05:38:12,779 | INFO     | ***************************************
[2025-10-12 07:38:42] 2025-10-12 05:38:12,780 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:38:42] 2025-10-12 05:38:12,780 | INFO     | ***************************************
[2025-10-12 07:38:42] 2025-10-12 05:38:12,780 | INFO     | 
[2025-10-12 07:38:42] 2025-10-12 05:38:12,780 | INFO     | architecture information:
[2025-10-12 07:38:42] 2025-10-12 05:38:12,780 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:38:42] 2025-10-12 05:38:12,790 | INFO     | cat /etc/os-release:
[2025-10-12 07:38:42] NAME="CentOS Linux"
[2025-10-12 07:38:42] VERSION="7 (Core)"
[2025-10-12 07:38:42] ID="centos"
[2025-10-12 07:38:42] ID_LIKE="rhel fedora"
[2025-10-12 07:38:42] VERSION_ID="7"
[2025-10-12 07:38:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:38:42] ANSI_COLOR="0;31"
[2025-10-12 07:38:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:38:42] HOME_URL="https://www.centos.org/"
[2025-10-12 07:38:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:38:42] 
[2025-10-12 07:38:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:38:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:38:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:38:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:38:42] 
[2025-10-12 07:38:42] 2025-10-12 05:38:12,790 | INFO     | ***************************************
[2025-10-12 07:38:42] 2025-10-12 05:38:13,293 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 07:38:42] 2025-10-12 05:38:13,307 | INFO     | sufficient remaining disk space (337164369920 B)
[2025-10-12 07:38:42] 2025-10-12 05:38:13,308 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:38:42] 2025-10-12 05:38:13,308 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:38:42] 2025-10-12 05:38:13,308 | INFO     | update_server=False
[2025-10-12 07:38:42] 2025-10-12 05:38:13,308 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:38:42] 2025-10-12 05:38:13,308 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:38:42] 2025-10-12 05:38:13,308 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 07:38:42] 2025-10-12 05:38:13,308 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:38:42] 2025-10-12 05:38:13,308 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:38:42] 2025-10-12 05:38:13,308 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:38:42] 2025-10-12 05:38:13,386 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:38:42] 2025-10-12 05:38:13,386 | INFO     | aborting loop
[2025-10-12 07:38:42] 2025-10-12 05:38:13,635 | INFO     | all data control threads have been joined
[2025-10-12 07:38:42] 2025-10-12 05:38:13,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:38:42] 2025-10-12 05:38:14,139 | INFO     | all job control threads have been joined
[2025-10-12 07:38:42] 2025-10-12 05:38:14,313 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:14,314 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:14,392 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:14,406 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:38:42] 2025-10-12 05:38:14,525 | INFO     | all payload control threads have been joined
[2025-10-12 07:38:42] 2025-10-12 05:38:14,576 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:14,641 | INFO     | [data] control thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:14,970 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:15,144 | INFO     | [job] control thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:15,213 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:15,215 | INFO     | [job] validate thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:15,279 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:15,338 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:15,531 | INFO     | [payload] control thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:15,578 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:15,742 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:15,889 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:18,413 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:38:42] 2025-10-12 05:38:37,162 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:38:42] 2025-10-12 05:38:37,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258592450368)>', '<ExcThread(monitor, started 140258079381248)>']
[2025-10-12 07:38:42] 2025-10-12 05:38:37,432 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:38:42] 2025-10-12 05:38:37,432 | INFO     | [monitor] control thread has ended
[2025-10-12 07:38:42] 2025-10-12 05:38:42,171 | INFO     | all workflow threads have been joined
[2025-10-12 07:38:42] 2025-10-12 05:38:42,171 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:38:42] 2025-10-12 05:38:42,172 | INFO     | traces error code: 0
[2025-10-12 07:38:42] 2025-10-12 05:38:42,172 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:38:42] 2025-10-12 05:38:42,226 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:38:42] 2025-10-12 05:38:42,229 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:38:42] 2025-10-12 05:38:42,231 [wrapper] pilotpid: 3296789
[2025-10-12 07:38:42] 2025-10-12 05:38:42,234 [wrapper] Pilot exit status: 0
[2025-10-12 07:38:42] 2025-10-12 05:38:42,242 [wrapper] pandaids: 6838366070
[2025-10-12 07:38:42] 2025-10-12 05:38:42,260 [wrapper] cleanup supervisor_pilot 3313114 3296790
[2025-10-12 07:38:42] 2025-10-12 05:38:42,262 [wrapper] Test setup, not cleaning
[2025-10-12 07:38:42] 2025-10-12 05:38:42,265 [wrapper] apfmon messages muted
[2025-10-12 07:38:42] 2025-10-12 05:38:42,267 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:38:42] 2025-10-12 05:38:42,270 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:38:42]  *** Error codes and diagnostics ***
[2025-10-12 07:38:42]     "exeErrorCode": 0,
[2025-10-12 07:38:42]     "exeErrorDiag": "",
[2025-10-12 07:38:42]     "pilotErrorCode": 0,
[2025-10-12 07:38:42]     "pilotErrorDiag": "",
[2025-10-12 07:38:42]  *** Listing of results directory ***
[2025-10-12 07:38:42] total 416564
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc    557409 Oct 11 13:21 pilot3.tar.gz
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc      5112 Oct 11 13:39 queuedata.json
[2025-10-12 07:38:42] -rwx------ 1 boinc boinc     36292 Oct 11 13:39 runpilot2-wrapper.sh
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc       100 Oct 12 06:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:38:42] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 06:33 run_atlas
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc       105 Oct 12 06:33 job.xml
[2025-10-12 07:38:42] -rw-r--r-- 2 boinc boinc 221557861 Oct 12 06:33 EVNT.46676267._002288.pool.root.1
[2025-10-12 07:38:42] drwxrwx--x 2 boinc boinc      4096 Oct 12 06:33 shared
[2025-10-12 07:38:42] -rw-r--r-- 2 boinc boinc    569681 Oct 12 06:33 input.tar.gz
[2025-10-12 07:38:42] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:33 start_atlas.sh
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:33 boinc_setup_complete
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc      6443 Oct 12 06:33 init_data.xml
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc         0 Oct 12 06:33 boinc_lockfile
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc      2550 Oct 12 06:33 pandaJob.out
[2025-10-12 07:38:42] -rw------- 1 boinc boinc    975512 Oct 12 06:33 agis_schedconf.cvmfs.json
[2025-10-12 07:38:42] -rw------- 1 boinc boinc   1560580 Oct 12 06:33 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:38:42] drwx------ 5 boinc boinc      4096 Oct 12 06:33 pilot3
[2025-10-12 07:38:42] -rw------- 1 boinc boinc 199459609 Oct 12 07:37 HITS.46676269._056988.pool.root.1
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc       529 Oct 12 07:37 boinc_task_state.xml
[2025-10-12 07:38:42] -rw------- 1 boinc boinc        95 Oct 12 07:37 pilot_heartbeat.json
[2025-10-12 07:38:42] -rw------- 1 boinc boinc      1018 Oct 12 07:38 memory_monitor_summary.json
[2025-10-12 07:38:42] -rw------- 1 boinc boinc    244291 Oct 12 07:38 log.46676269._056988.job.log.tgz.1
[2025-10-12 07:38:42] -rw------- 1 boinc boinc      7754 Oct 12 07:38 heartbeat.json
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc      8192 Oct 12 07:38 boinc_mmap_file
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc        27 Oct 12 07:38 wrapper_checkpoint.txt
[2025-10-12 07:38:42] -rw------- 1 boinc boinc      4556 Oct 12 07:38 pilotlog.txt
[2025-10-12 07:38:42] -rw------- 1 boinc boinc    579937 Oct 12 07:38 log.46676269._056988.job.log.1
[2025-10-12 07:38:42] -rw------- 1 boinc boinc       357 Oct 12 07:38 output.list
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc       620 Oct 12 07:38 runtime_log
[2025-10-12 07:38:42] -rw------- 1 boinc boinc    839680 Oct 12 07:38 result.tar.gz
[2025-10-12 07:38:42] -rw------- 1 boinc boinc       659 Oct 12 07:38 xLLLDmJ8mR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8KgNDmU7YwMn.diag
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc      8782 Oct 12 07:38 runtime_log.err
[2025-10-12 07:38:42] -rw-r--r-- 1 boinc boinc     12565 Oct 12 07:38 stderr.txt
[2025-10-12 07:38:42] HITS file was successfully produced:
[2025-10-12 07:38:42] -rw------- 1 boinc boinc 199459609 Oct 12 07:37 shared/HITS.pool.root.1
[2025-10-12 07:38:42]  *** Contents of shared directory: ***
[2025-10-12 07:38:42] total 412560
[2025-10-12 07:38:42] -rw-r--r-- 2 boinc boinc 221557861 Oct 12 06:33 ATLAS.root_0
[2025-10-12 07:38:42] -rw-r--r-- 2 boinc boinc    569681 Oct 12 06:33 input.tar.gz
[2025-10-12 07:38:42] -rw-r--r-- 2 boinc boinc     15120 Oct 12 06:33 start_atlas.sh
[2025-10-12 07:38:42] -rw------- 1 boinc boinc 199459609 Oct 12 07:37 HITS.pool.root.1
[2025-10-12 07:38:42] -rw------- 1 boinc boinc    839680 Oct 12 07:38 result.tar.gz
07:38:43 (3292984): run_atlas exited; CPU time 14548.043154
07:38:43 (3292984): called boinc_finish(0)

</stderr_txt>
]]>

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