Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:11:42 (2755007): wrapper (7.7.26015): starting
15:11:42 (2755007): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 15:11:42] Arguments: --nthreads 8
[2025-10-11 15:11:42] Threads: 8
[2025-10-11 15:11:42] Checking for CVMFS
[2025-10-11 15:11:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 15:11:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 15:11:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 15:11:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 15:11:43] 2.13.1.0 4140 3201 73484 151593 1 188 34039740 39288832 3664 16776704 0 11015627 99.997 108522 33411 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 15:11:43] CVMFS is ok
[2025-10-11 15:11:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 15:11:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 15:11:43] Further information can be found at the LHC@home message board.
[2025-10-11 15:11:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 15:11:43] Checking for apptainer binary...
[2025-10-11 15:11:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 15:11:43] Running /usr/bin/apptainer --version
[2025-10-11 15:11:43] apptainer version 1.4.3-1.el9
[2025-10-11 15:11:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 15:11:43] c-210-16.aglt2.org
[2025-10-11 15:11:43] apptainer works
[2025-10-11 15:11:43] Set ATHENA_PROC_NUMBER=8
[2025-10-11 15:11:43] Set ATHENA_CORE_NUMBER=8
[2025-10-11 15:11:43] Starting ATLAS job with PandaID=6838453147
[2025-10-11 15:11:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 16:51:09]  *** The last 200 lines of the pilot log: ***
[2025-10-11 16:51:09]  replicas=None
[2025-10-11 16:51:09]  scope=mc23_13p6TeV
[2025-10-11 16:51:09]  status=None
[2025-10-11 16:51:09]  status_code=0
[2025-10-11 16:51:09]  storage_token=
[2025-10-11 16:51:09]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6838453147/log.46676269._059011.job.log.tgz.1
[2025-10-11 16:51:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/5c/log.46676269._059011.job.log.tgz.1
[2025-10-11 16:51:09]  workdir=None
[2025-10-11 16:51:09] ]
[2025-10-11 16:51:09] 2025-10-11 20:50:08,165 | INFO     | transferring file log.46676269._059011.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6838453147/log.46676269._059011.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 16:51:09] 2025-10-11 20:50:08,166 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6838453147/log.46676269._059011.job.log.tgz.1 /tmp/boinchome/slots/3/log.46676269._059011.job
[2025-10-11 16:51:09] 2025-10-11 20:50:08,184 | INFO     | adding to output.list: log.46676269._059011.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/5c/log.46676269._059011.job.log.tg
[2025-10-11 16:51:09] 2025-10-11 20:50:08,185 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 16:51:09] 2025-10-11 20:50:08,185 | INFO     | summary of transferred files:
[2025-10-11 16:51:09] 2025-10-11 20:50:08,185 | INFO     |  -- lfn=log.46676269._059011.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 16:51:09] 2025-10-11 20:50:08,185 | INFO     | stage-out finished correctly
[2025-10-11 16:51:09] 2025-10-11 20:50:09,605 | INFO     | monitor loop #439: job 0:6838453147 is in state 'finished'
[2025-10-11 16:51:09] 2025-10-11 20:50:09,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:51:09] 2025-10-11 20:50:09,673 | INFO     | time since job start (5894s) is within the limit (172800.0s)
[2025-10-11 16:51:09] 2025-10-11 20:50:10,999 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 16:51:09] 2025-10-11 20:50:11,678 | INFO     | time since job start (5896s) is within the limit (172800.0s)
[2025-10-11 16:51:09] 2025-10-11 20:50:12,108 | INFO     | monitor loop #440: job 0:6838453147 is in state 'finished'
[2025-10-11 16:51:09] 2025-10-11 20:50:12,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:51:09] 2025-10-11 20:50:13,261 | INFO     | job 6838453147 has state=finished
[2025-10-11 16:51:09] 2025-10-11 20:50:13,261 | INFO     | preparing for final server update for job 6838453147 in state='finished'
[2025-10-11 16:51:09] 2025-10-11 20:50:13,262 | INFO     | this job has now completed (state=finished)
[2025-10-11 16:51:09] 2025-10-11 20:50:13,262 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 16:51:09] 2025-10-11 20:50:13,263 | INFO     | log transfer has been attempted: DONE
[2025-10-11 16:51:09] 2025-10-11 20:50:13,263 | INFO     | job 6838453147 has finished - writing final server update
[2025-10-11 16:51:09] 2025-10-11 20:50:13,263 | INFO     | total number of processed events: 400 (read)
[2025-10-11 16:51:09] 2025-10-11 20:50:13,265 | INFO     | executing command: lscpu
[2025-10-11 16:51:09] 2025-10-11 20:50:13,305 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 16:51:09] 2025-10-11 20:50:13,679 | INFO     | time since job start (5898s) is within the limit (172800.0s)
[2025-10-11 16:51:09] 2025-10-11 20:50:14,613 | INFO     | monitor loop #441: job 0:6838453147 is in state 'finished'
[2025-10-11 16:51:09] 2025-10-11 20:50:14,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:51:09] 2025-10-11 20:50:15,685 | INFO     | time since job start (5900s) is within the limit (172800.0s)
[2025-10-11 16:51:09] 2025-10-11 20:50:16,541 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 16:51:09] 2025-10-11 20:50:16,547 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2640.0353750000004
[2025-10-11 16:51:09] 2025-10-11 20:50:16,554 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6838453147/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 16:51:09] 2025-10-11 20:50:16,554 | INFO     | extracted standard info from prmon json
[2025-10-11 16:51:09] 2025-10-11 20:50:16,554 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 16:51:09] 2025-10-11 20:50:16,555 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 16:51:09] 2025-10-11 20:50:16,555 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 16:51:09] 2025-10-11 20:50:16,555 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 16:51:09] 2025-10-11 20:50:16,558 | INFO     | fitting pss+swap vs Time
[2025-10-11 16:51:09] 2025-10-11 20:50:16,558 | INFO     | sum of square deviations: 226022842.5
[2025-10-11 16:51:09] 2025-10-11 20:50:16,558 | INFO     | sum of deviations: -5610684657.0
[2025-10-11 16:51:09] 2025-10-11 20:50:16,559 | INFO     | mean x: 1760212959.5
[2025-10-11 16:51:09] 2025-10-11 20:50:16,559 | INFO     | mean y: 2561760.066666667
[2025-10-11 16:51:09] 2025-10-11 20:50:16,559 | INFO     | -- intersect: 43697259763.518295
[2025-10-11 16:51:09] 2025-10-11 20:50:16,559 | INFO     | intersect: 43697259763.518295
[2025-10-11 16:51:09] 2025-10-11 20:50:16,559 | INFO     | chi2: 0.00955437545032838
[2025-10-11 16:51:09] 2025-10-11 20:50:16,559 | INFO     | -- intersect: 43697259763.518295
[2025-10-11 16:51:09] 2025-10-11 20:50:16,560 | INFO     | current memory leak: -24.82 B/s (using 90 data points, chi2=0.01)
[2025-10-11 16:51:09] 2025-10-11 20:50:16,560 | INFO     | could have reported an average CPU frequency of 2605 MHz (7 samples)
[2025-10-11 16:51:09] 2025-10-11 20:50:16,560 | INFO     | ..............................
[2025-10-11 16:51:09] 2025-10-11 20:50:16,560 | INFO     | . Timing measurements:
[2025-10-11 16:51:09] 2025-10-11 20:50:16,560 | INFO     | . get job = 0 s
[2025-10-11 16:51:09] 2025-10-11 20:50:16,560 | INFO     | . initial setup = 2 s
[2025-10-11 16:51:09] 2025-10-11 20:50:16,561 | INFO     | . payload setup = 5 s
[2025-10-11 16:51:09] 2025-10-11 20:50:16,561 | INFO     | . stage-in = 0 s
[2025-10-11 16:51:09] 2025-10-11 20:50:16,561 | INFO     | . payload execution = 5868 s
[2025-10-11 16:51:09] 2025-10-11 20:50:16,561 | INFO     | . stage-out = 0 s
[2025-10-11 16:51:09] 2025-10-11 20:50:16,561 | INFO     | . log creation = 0 s
[2025-10-11 16:51:09] 2025-10-11 20:50:16,561 | INFO     | ..............................
[2025-10-11 16:51:09] 2025-10-11 20:50:16,852 | INFO     | 
[2025-10-11 16:51:09] 2025-10-11 20:50:16,852 | INFO     | job summary report
[2025-10-11 16:51:09] 2025-10-11 20:50:16,852 | INFO     | --------------------------------------------------
[2025-10-11 16:51:09] 2025-10-11 20:50:16,852 | INFO     | PanDA job id: 6838453147
[2025-10-11 16:51:09] 2025-10-11 20:50:16,853 | INFO     | task id: 46676269
[2025-10-11 16:51:09] 2025-10-11 20:50:16,853 | INFO     | errors: (none)
[2025-10-11 16:51:09] 2025-10-11 20:50:16,853 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 16:51:09] 2025-10-11 20:50:16,853 | INFO     | pilot state: finished 
[2025-10-11 16:51:09] 2025-10-11 20:50:16,853 | INFO     | transexitcode: 0
[2025-10-11 16:51:09] 2025-10-11 20:50:16,853 | INFO     | exeerrorcode: 0
[2025-10-11 16:51:09] 2025-10-11 20:50:16,853 | INFO     | exeerrordiag: 
[2025-10-11 16:51:09] 2025-10-11 20:50:16,853 | INFO     | exitcode: 0
[2025-10-11 16:51:09] 2025-10-11 20:50:16,853 | INFO     | exitmsg: OK
[2025-10-11 16:51:09] 2025-10-11 20:50:16,853 | INFO     | cpuconsumptiontime: 43316 s
[2025-10-11 16:51:09] 2025-10-11 20:50:16,854 | INFO     | nevents: 400
[2025-10-11 16:51:09] 2025-10-11 20:50:16,854 | INFO     | neventsw: 0
[2025-10-11 16:51:09] 2025-10-11 20:50:16,854 | INFO     | pid: 2768720
[2025-10-11 16:51:09] 2025-10-11 20:50:16,854 | INFO     | pgrp: 2768720
[2025-10-11 16:51:09] 2025-10-11 20:50:16,854 | INFO     | corecount: 8
[2025-10-11 16:51:09] 2025-10-11 20:50:16,854 | INFO     | event service: False
[2025-10-11 16:51:09] 2025-10-11 20:50:16,854 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 11: 2349175, 5877: 2375963, 5878: 2384961, 5881: 2385145, 5886: 2385339}
[2025-10-11 16:51:09] 2025-10-11 20:50:16,854 | INFO     | --------------------------------------------------
[2025-10-11 16:51:09] 2025-10-11 20:50:16,854 | INFO     | 
[2025-10-11 16:51:09] 2025-10-11 20:50:16,855 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-11 16:51:09] 2025-10-11 20:50:16,872 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,873 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,873 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,873 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,873 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,873 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,873 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,873 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,873 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,874 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,874 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,874 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,874 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,874 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,874 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,874 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,874 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,874 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 16:51:09] 2025-10-11 20:50:16,875 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,875 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 16:51:09] 2025-10-11 20:50:16,875 | INFO     | job 6838453147 has completed (purged errors)
[2025-10-11 16:51:09] 2025-10-11 20:50:16,875 | INFO     | overall cleanup function is called
[2025-10-11 16:51:09] 2025-10-11 20:50:17,883 | INFO     | --- collectZombieJob: --- 10, [2768720]
[2025-10-11 16:51:09] 2025-10-11 20:50:17,883 | INFO     | zombie collector waiting for pid 2768720
[2025-10-11 16:51:09] 2025-10-11 20:50:17,883 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 16:51:09] 2025-10-11 20:50:17,883 | INFO     | collected zombie processes
[2025-10-11 16:51:09] 2025-10-11 20:50:17,884 | INFO     | will attempt to kill all subprocesses of pid=2768720
[2025-10-11 16:51:09] 2025-10-11 20:50:18,110 | INFO     | process IDs to be killed: [2768720] (in reverse order)
[2025-10-11 16:51:09] 2025-10-11 20:50:18,174 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 16:51:09] 2025-10-11 20:50:18,174 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 16:51:09] 2025-10-11 20:50:18,180 | INFO     | did not find any defunct processes belonging to 2768720
[2025-10-11 16:51:09] 2025-10-11 20:50:18,186 | INFO     | did not find any defunct processes belonging to 2768720
[2025-10-11 16:51:09] 2025-10-11 20:50:18,186 | INFO     | ready for new job
[2025-10-11 16:51:09] 2025-10-11 20:50:18,186 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 16:51:09] 2025-10-11 20:50:18,188 | INFO     | ***************************************
[2025-10-11 16:51:09] 2025-10-11 20:50:18,188 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 16:51:09] 2025-10-11 20:50:18,188 | INFO     | ***************************************
[2025-10-11 16:51:09] 2025-10-11 20:50:18,189 | INFO     | 
[2025-10-11 16:51:09] 2025-10-11 20:50:18,190 | INFO     | architecture information:
[2025-10-11 16:51:09] 2025-10-11 20:50:18,191 | INFO     | executing command: cat /etc/os-release
[2025-10-11 16:51:09] 2025-10-11 20:50:18,203 | INFO     | cat /etc/os-release:
[2025-10-11 16:51:09] NAME="CentOS Linux"
[2025-10-11 16:51:09] VERSION="7 (Core)"
[2025-10-11 16:51:09] ID="centos"
[2025-10-11 16:51:09] ID_LIKE="rhel fedora"
[2025-10-11 16:51:09] VERSION_ID="7"
[2025-10-11 16:51:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 16:51:09] ANSI_COLOR="0;31"
[2025-10-11 16:51:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 16:51:09] HOME_URL="https://www.centos.org/"
[2025-10-11 16:51:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 16:51:09] 
[2025-10-11 16:51:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 16:51:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 16:51:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 16:51:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 16:51:09] 
[2025-10-11 16:51:09] 2025-10-11 20:50:18,203 | INFO     | ***************************************
[2025-10-11 16:51:09] 2025-10-11 20:50:18,706 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-11 16:51:09] 2025-10-11 20:50:18,721 | INFO     | sufficient remaining disk space (51654950912 B)
[2025-10-11 16:51:09] 2025-10-11 20:50:18,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 16:51:09] 2025-10-11 20:50:18,722 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 16:51:09] 2025-10-11 20:50:18,722 | INFO     | update_server=False
[2025-10-11 16:51:09] 2025-10-11 20:50:18,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 16:51:09] 2025-10-11 20:50:18,722 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:51:09] 2025-10-11 20:50:18,722 | INFO     | aborting loop
[2025-10-11 16:51:09] 2025-10-11 20:50:18,793 | INFO     | all data control threads have been joined
[2025-10-11 16:51:09] 2025-10-11 20:50:18,802 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 16:51:09] 2025-10-11 20:50:19,000 | INFO     | all job control threads have been joined
[2025-10-11 16:51:09] 2025-10-11 20:50:19,300 | INFO     | all payload control threads have been joined
[2025-10-11 16:51:09] 2025-10-11 20:50:19,724 | INFO     | [job] retrieve thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:19,728 | INFO     | [job] job monitor thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:19,757 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:19,798 | INFO     | [data] control thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:19,893 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:20,005 | INFO     | [job] control thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:20,126 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:20,305 | INFO     | [payload] control thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:20,432 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:20,471 | INFO     | [payload] failed_post thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:20,693 | INFO     | [data] copytool_in thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:20,698 | INFO     | [job] validate thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:20,807 | INFO     | [data] copytool_out thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:21,172 | INFO     | [payload] validate_post thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:21,618 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 16:51:09] 2025-10-11 20:50:21,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:51:09] 2025-10-11 20:50:22,683 | INFO     | [job] queue monitor thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:25,623 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 16:51:09] 2025-10-11 20:50:49,054 | INFO     | PID=2759210 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 16:51:09] 2025-10-11 20:50:49,055 | INFO     | .. there are 5 such processes running
[2025-10-11 16:51:09] 2025-10-11 20:50:49,055 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 16:51:09] 2025-10-11 20:50:49,056 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 16:51:09] 2025-10-11 20:50:49,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 16:51:09] 2025-10-11 20:51:04,359 | INFO     | [monitor] cgroup control has ended
[2025-10-11 16:51:09] 2025-10-11 20:51:04,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139951714039616)>', '<ExcThread(monitor, started 139951215724288)>']
[2025-10-11 16:51:09] 2025-10-11 20:51:05,138 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 16:51:09] 2025-10-11 20:51:05,138 | INFO     | [monitor] control thread has ended
[2025-10-11 16:51:09] 2025-10-11 20:51:09,652 | INFO     | all workflow threads have been joined
[2025-10-11 16:51:09] 2025-10-11 20:51:09,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 16:51:09] 2025-10-11 20:51:09,653 | INFO     | traces error code: 0
[2025-10-11 16:51:09] 2025-10-11 20:51:09,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 16:51:09] 2025-10-11 20:51:09,760 [wrapper] ==== pilot stdout END ====
[2025-10-11 16:51:09] 2025-10-11 20:51:09,762 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 16:51:09] 2025-10-11 20:51:09,764 [wrapper] pilotpid: 2759210
[2025-10-11 16:51:09] 2025-10-11 20:51:09,767 [wrapper] Pilot exit status: 0
[2025-10-11 16:51:09] 2025-10-11 20:51:09,777 [wrapper] pandaids: 6838453147
[2025-10-11 16:51:09] 2025-10-11 20:51:09,820 [wrapper] cleanup supervisor_pilot 2950085 2759211
[2025-10-11 16:51:09] 2025-10-11 20:51:09,823 [wrapper] Test setup, not cleaning
[2025-10-11 16:51:09] 2025-10-11 20:51:09,826 [wrapper] apfmon messages muted
[2025-10-11 16:51:09] 2025-10-11 20:51:09,828 [wrapper] ==== wrapper stdout END ====
[2025-10-11 16:51:09] 2025-10-11 20:51:09,831 [wrapper] ==== wrapper stderr END ====
[2025-10-11 16:51:09]  *** Error codes and diagnostics ***
[2025-10-11 16:51:09]     "exeErrorCode": 0,
[2025-10-11 16:51:09]     "exeErrorDiag": "",
[2025-10-11 16:51:09]     "pilotErrorCode": 0,
[2025-10-11 16:51:09]     "pilotErrorDiag": "",
[2025-10-11 16:51:09]  *** Listing of results directory ***
[2025-10-11 16:51:09] total 407068
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 10:01 pilot3.tar.gz
[2025-10-11 16:51:09] -rwx------. 1 boincer umatlas     36292 Oct 11 10:08 runpilot2-wrapper.sh
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 10:08 queuedata.json
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas       100 Oct 11 15:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 16:51:09] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 15:11 run_atlas
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas       105 Oct 11 15:11 job.xml
[2025-10-11 16:51:09] -rw-r--r--. 2 boincer umatlas 218434547 Oct 11 15:11 EVNT.46676267._002368.pool.root.1
[2025-10-11 16:51:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 15:11 start_atlas.sh
[2025-10-11 16:51:09] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 15:11 shared
[2025-10-11 16:51:09] -rw-r--r--. 2 boincer umatlas    569675 Oct 11 15:11 input.tar.gz
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas         0 Oct 11 15:11 boinc_lockfile
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 15:11 pandaJob.out
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas    975520 Oct 11 15:11 agis_schedconf.cvmfs.json
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas   1560580 Oct 11 15:11 agis_ddmendpoints.agis.ALL.json
[2025-10-11 16:51:09] drwx------. 5 boincer umatlas      4096 Oct 11 15:11 pilot3
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas      6659 Oct 11 16:47 init_data.xml
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas 192074898 Oct 11 16:49 HITS.46676269._059011.pool.root.1
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas       529 Oct 11 16:49 boinc_task_state.xml
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas      1034 Oct 11 16:50 memory_monitor_summary.json
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas    348714 Oct 11 16:50 log.46676269._059011.job.log.tgz.1
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas      7818 Oct 11 16:50 heartbeat.json
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas        95 Oct 11 16:50 pilot_heartbeat.json
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas        27 Oct 11 16:51 wrapper_checkpoint.txt
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 16:51 boinc_mmap_file
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas      4823 Oct 11 16:51 pilotlog.txt
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas    861823 Oct 11 16:51 log.46676269._059011.job.log.1
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas       357 Oct 11 16:51 output.list
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas       620 Oct 11 16:51 runtime_log
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas   1228800 Oct 11 16:51 result.tar.gz
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas      8703 Oct 11 16:51 runtime_log.err
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas       652 Oct 11 16:51 guyNDmzRpR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmd2RMDm7jnV1m.diag
[2025-10-11 16:51:09] -rw-r--r--. 1 boincer umatlas     21856 Oct 11 16:51 stderr.txt
[2025-10-11 16:51:09] HITS file was successfully produced:
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas 192074898 Oct 11 16:49 shared/HITS.pool.root.1
[2025-10-11 16:51:09]  *** Contents of shared directory: ***
[2025-10-11 16:51:09] total 402676
[2025-10-11 16:51:09] -rw-r--r--. 2 boincer umatlas 218434547 Oct 11 15:11 ATLAS.root_0
[2025-10-11 16:51:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 15:11 start_atlas.sh
[2025-10-11 16:51:09] -rw-r--r--. 2 boincer umatlas    569675 Oct 11 15:11 input.tar.gz
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas 192074898 Oct 11 16:49 HITS.pool.root.1
[2025-10-11 16:51:09] -rw-------. 1 boincer umatlas   1228800 Oct 11 16:51 result.tar.gz
16:51:11 (2755007): run_atlas exited; CPU time 43424.506632
16:51:11 (2755007): called boinc_finish(0)

</stderr_txt>
]]>

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