Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:19:53 (2132851): wrapper (7.7.26015): starting
04:19:53 (2132851): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 04:19:53] Arguments: --nthreads 2
[2025-10-12 04:19:53] Threads: 2
[2025-10-12 04:19:53] Checking for CVMFS
[2025-10-12 04:19:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 04:19:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 04:19:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 04:19:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 04:19:53] 2.9.2.0 1554424 2311 58900 151604 2 56 29876703 36864000 0 130560 0 1376087 99.989 78547 988 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 04:19:53] CVMFS is ok
[2025-10-12 04:19:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 04:19:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 04:19:53] Further information can be found at the LHC@home message board.
[2025-10-12 04:19:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 04:19:53] Checking for apptainer binary...
[2025-10-12 04:19:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 04:19:53] Running /usr/bin/apptainer --version
[2025-10-12 04:19:53] apptainer version 1.4.1-1.1
[2025-10-12 04:19:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 04:19:53] thA310
[2025-10-12 04:19:53] apptainer works
[2025-10-12 04:19:53] Set ATHENA_PROC_NUMBER=2
[2025-10-12 04:19:53] Set ATHENA_CORE_NUMBER=2
[2025-10-12 04:19:53] Starting ATLAS job with PandaID=6838452917
[2025-10-12 04:19:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:26:44]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:26:44] 2025-10-12 04:26:11,896 | INFO     | job 6838452917 has completed (purged errors)
[2025-10-12 06:26:44] 2025-10-12 04:26:11,896 | INFO     | overall cleanup function is called
[2025-10-12 06:26:44] 2025-10-12 04:26:12,902 | INFO     | --- collectZombieJob: --- 10, [2142971]
[2025-10-12 06:26:44] 2025-10-12 04:26:12,902 | INFO     | zombie collector waiting for pid 2142971
[2025-10-12 06:26:44] 2025-10-12 04:26:12,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:26:44] 2025-10-12 04:26:12,903 | INFO     | collected zombie processes
[2025-10-12 06:26:44] 2025-10-12 04:26:12,903 | INFO     | will attempt to kill all subprocesses of pid=2142971
[2025-10-12 06:26:44] 2025-10-12 04:26:12,944 | INFO     | process IDs to be killed: [2142971] (in reverse order)
[2025-10-12 06:26:44] 2025-10-12 04:26:12,967 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:26:44] 2025-10-12 04:26:12,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:26:44] 2025-10-12 04:26:12,968 | INFO     | did not find any defunct processes belonging to 2142971
[2025-10-12 06:26:44] 2025-10-12 04:26:12,969 | INFO     | did not find any defunct processes belonging to 2142971
[2025-10-12 06:26:44] 2025-10-12 04:26:12,969 | INFO     | ready for new job
[2025-10-12 06:26:44] 2025-10-12 04:26:12,969 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:26:44] 2025-10-12 04:26:12,969 | INFO     | ***************************************
[2025-10-12 06:26:44] 2025-10-12 04:26:12,969 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:26:44] 2025-10-12 04:26:12,969 | INFO     | ***************************************
[2025-10-12 06:26:44] 2025-10-12 04:26:12,969 | INFO     | 
[2025-10-12 06:26:44] 2025-10-12 04:26:12,970 | INFO     | architecture information:
[2025-10-12 06:26:44] 2025-10-12 04:26:12,970 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:26:44] 2025-10-12 04:26:12,979 | INFO     | cat /etc/os-release:
[2025-10-12 06:26:44] NAME="CentOS Linux"
[2025-10-12 06:26:44] VERSION="7 (Core)"
[2025-10-12 06:26:44] ID="centos"
[2025-10-12 06:26:44] ID_LIKE="rhel fedora"
[2025-10-12 06:26:44] VERSION_ID="7"
[2025-10-12 06:26:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:26:44] ANSI_COLOR="0;31"
[2025-10-12 06:26:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:26:44] HOME_URL="https://www.centos.org/"
[2025-10-12 06:26:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:26:44] 
[2025-10-12 06:26:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:26:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:26:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:26:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:26:44] 
[2025-10-12 06:26:44] 2025-10-12 04:26:12,979 | INFO     | ***************************************
[2025-10-12 06:26:44] 2025-10-12 04:26:13,482 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 06:26:44] 2025-10-12 04:26:13,494 | INFO     | sufficient remaining disk space (494328086528 B)
[2025-10-12 06:26:44] 2025-10-12 04:26:13,495 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:26:44] 2025-10-12 04:26:13,495 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:26:44] 2025-10-12 04:26:13,495 | INFO     | update_server=False
[2025-10-12 06:26:44] 2025-10-12 04:26:13,495 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:26:44] 2025-10-12 04:26:13,495 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:26:44] 2025-10-12 04:26:13,498 | INFO     | all job control threads have been joined
[2025-10-12 06:26:44] 2025-10-12 04:26:13,603 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:26:44] 2025-10-12 04:26:13,603 | INFO     | aborting loop
[2025-10-12 06:26:44] 2025-10-12 04:26:14,501 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:14,504 | INFO     | [job] control thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:14,505 | INFO     | all data control threads have been joined
[2025-10-12 06:26:44] 2025-10-12 04:26:14,511 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:14,529 | INFO     | [job] validate thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:14,609 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:14,706 | INFO     | all payload control threads have been joined
[2025-10-12 06:26:44] 2025-10-12 04:26:14,820 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:14,974 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:15,288 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:15,445 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:15,501 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:15,510 | INFO     | [data] control thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:15,712 | INFO     | [payload] control thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:15,853 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:16,457 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:26:44] 2025-10-12 04:26:16,608 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:26:44] 2025-10-12 04:26:17,458 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:18,196 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:26:44] 2025-10-12 04:26:20,615 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:24,139 | INFO     | job.realtimelogging is not enabled
[2025-10-12 06:26:44] 2025-10-12 04:26:25,145 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:26:44] 2025-10-12 04:26:25,619 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140456633145152)>', '<ExcThread(monitor, started 140455622731520)>']
[2025-10-12 06:26:44] 2025-10-12 04:26:30,645 | INFO     | all workflow threads have been joined
[2025-10-12 06:26:44] 2025-10-12 04:26:30,646 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:26:44] 2025-10-12 04:26:30,646 | INFO     | traces error code: 0
[2025-10-12 06:26:44] 2025-10-12 04:26:30,646 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:26:44] 2025-10-12 04:26:44,054 | INFO     | PID=2136558 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 06:26:44] 2025-10-12 04:26:44,054 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:26:44] 2025-10-12 04:26:44,054 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:26:44] 2025-10-12 04:26:44,054 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:26:44] 2025-10-12 04:26:44,054 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:26:44] 2025-10-12 04:26:44,054 | INFO     | [monitor] control thread has ended
[2025-10-12 06:26:44] 2025-10-12 04:26:44,093 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:26:44] 2025-10-12 04:26:44,096 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:26:44] 2025-10-12 04:26:44,099 [wrapper] pilotpid: 2136558
[2025-10-12 06:26:44] 2025-10-12 04:26:44,101 [wrapper] Pilot exit status: 0
[2025-10-12 06:26:44] 2025-10-12 04:26:44,107 [wrapper] pandaids: 6838452917
[2025-10-12 06:26:44] 2025-10-12 04:26:44,119 [wrapper] cleanup supervisor_pilot 2157483 2136559
[2025-10-12 06:26:44] 2025-10-12 04:26:44,121 [wrapper] Test setup, not cleaning
[2025-10-12 06:26:44] 2025-10-12 04:26:44,123 [wrapper] apfmon messages muted
[2025-10-12 06:26:44] 2025-10-12 04:26:44,125 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:26:44] 2025-10-12 04:26:44,127 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:26:44]  *** Error codes and diagnostics ***
[2025-10-12 06:26:44]     "exeErrorCode": 0,
[2025-10-12 06:26:44]     "exeErrorDiag": "",
[2025-10-12 06:26:44]     "pilotErrorCode": 0,
[2025-10-12 06:26:44]     "pilotErrorDiag": "",
[2025-10-12 06:26:44]  *** Listing of results directory ***
[2025-10-12 06:26:44] total 412068
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc    557409 Oct 11 15:56 pilot3.tar.gz
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc      5112 Oct 11 15:58 queuedata.json
[2025-10-12 06:26:44] -rwx------ 1 boinc boinc     36292 Oct 11 15:59 runpilot2-wrapper.sh
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc       100 Oct 12 04:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:26:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 04:19 run_atlas
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc       105 Oct 12 04:19 job.xml
[2025-10-12 06:26:44] -rw-r--r-- 2 boinc boinc 220543418 Oct 12 04:19 EVNT.46676267._002360.pool.root.1
[2025-10-12 06:26:44] -rw-r--r-- 2 boinc boinc    569675 Oct 12 04:19 input.tar.gz
[2025-10-12 06:26:44] -rw-r--r-- 2 boinc boinc     15120 Oct 12 04:19 start_atlas.sh
[2025-10-12 06:26:44] drwxrwx--x 2 boinc boinc      4096 Oct 12 04:19 shared
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc         0 Oct 12 04:19 boinc_setup_complete
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc      6206 Oct 12 04:19 init_data.xml
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc         0 Oct 12 04:19 boinc_lockfile
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc      2550 Oct 12 04:19 pandaJob.out
[2025-10-12 06:26:44] -rw------- 1 boinc boinc    975496 Oct 12 04:20 agis_schedconf.cvmfs.json
[2025-10-12 06:26:44] -rw------- 1 boinc boinc   1560580 Oct 12 04:20 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:26:44] drwx------ 5 boinc boinc      4096 Oct 12 04:20 pilot3
[2025-10-12 06:26:44] -rw------- 1 boinc boinc 194794591 Oct 12 06:25 HITS.46676269._058861.pool.root.1
[2025-10-12 06:26:44] -rw------- 1 boinc boinc        95 Oct 12 06:25 pilot_heartbeat.json
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc       530 Oct 12 06:25 boinc_task_state.xml
[2025-10-12 06:26:44] -rw------- 1 boinc boinc      1017 Oct 12 06:25 memory_monitor_summary.json
[2025-10-12 06:26:44] -rw------- 1 boinc boinc    276600 Oct 12 06:25 log.46676269._058861.job.log.tgz.1
[2025-10-12 06:26:44] -rw------- 1 boinc boinc      7758 Oct 12 06:26 heartbeat.json
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc        27 Oct 12 06:26 wrapper_checkpoint.txt
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc      8192 Oct 12 06:26 boinc_mmap_file
[2025-10-12 06:26:44] -rw------- 1 boinc boinc       747 Oct 12 06:26 pilotlog.txt
[2025-10-12 06:26:44] -rw------- 1 boinc boinc   1089314 Oct 12 06:26 log.46676269._058861.job.log.1
[2025-10-12 06:26:44] -rw------- 1 boinc boinc       357 Oct 12 06:26 output.list
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc       620 Oct 12 06:26 runtime_log
[2025-10-12 06:26:44] -rw------- 1 boinc boinc   1382400 Oct 12 06:26 result.tar.gz
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc      8777 Oct 12 06:26 runtime_log.err
[2025-10-12 06:26:44] -rw------- 1 boinc boinc       659 Oct 12 06:26 E2lLDm2IpR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDbgNDmud7DOn.diag
[2025-10-12 06:26:44] -rw-r--r-- 1 boinc boinc     10904 Oct 12 06:26 stderr.txt
[2025-10-12 06:26:44] HITS file was successfully produced:
[2025-10-12 06:26:44] -rw------- 1 boinc boinc 194794591 Oct 12 06:25 shared/HITS.pool.root.1
[2025-10-12 06:26:44]  *** Contents of shared directory: ***
[2025-10-12 06:26:44] total 407544
[2025-10-12 06:26:44] -rw-r--r-- 2 boinc boinc 220543418 Oct 12 04:19 ATLAS.root_0
[2025-10-12 06:26:44] -rw-r--r-- 2 boinc boinc    569675 Oct 12 04:19 input.tar.gz
[2025-10-12 06:26:44] -rw-r--r-- 2 boinc boinc     15120 Oct 12 04:19 start_atlas.sh
[2025-10-12 06:26:44] -rw------- 1 boinc boinc 194794591 Oct 12 06:25 HITS.pool.root.1
[2025-10-12 06:26:44] -rw------- 1 boinc boinc   1382400 Oct 12 06:26 result.tar.gz
06:26:45 (2132851): run_atlas exited; CPU time 14689.611857
06:26:45 (2132851): called boinc_finish(0)

</stderr_txt>
]]>

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