Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
22:59:47 (2805386): wrapper (7.7.26015): starting
22:59:47 (2805386): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 22:59:47] Arguments: --nthreads 12
[2025-10-11 22:59:47] Threads: 12
[2025-10-11 22:59:47] Checking for CVMFS
[2025-10-11 22:59:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 22:59:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 22:59:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 22:59:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 22:59:47] 2.13.2.0 2686496 85 48416 151599 3 188 2236505 4096001 94 130560 0 333716 99.994 5384 783 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-11 22:59:47] CVMFS is ok
[2025-10-11 22:59:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 22:59:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 22:59:47] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-11 22:59:47] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-11 22:59:47] Further information can be found at the LHC@home message board.
[2025-10-11 22:59:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 22:59:47] Checking for apptainer binary...
[2025-10-11 22:59:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 22:59:47] Running /usr/bin/apptainer --version
[2025-10-11 22:59:47] apptainer version 1.4.3
[2025-10-11 22:59:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 22:59:47] test-run
[2025-10-11 22:59:47] apptainer works
[2025-10-11 22:59:47] Set ATHENA_PROC_NUMBER=12
[2025-10-11 22:59:47] Set ATHENA_CORE_NUMBER=12
[2025-10-11 22:59:47] Starting ATLAS job with PandaID=6836606929
[2025-10-11 22:59:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:25:00]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:25:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/0d/log.46676269._011546.job.log.tgz.1
[2025-10-11 23:25:00]  workdir=None
[2025-10-11 23:25:00] ]
[2025-10-11 23:25:00] 2025-10-11 23:23:48,318 | INFO     | transferring file log.46676269._011546.job.log.tgz.1 from /var/lib/boinc-client/slots/4/PanDA_Pilot-6836606929/log.46676269._011546.job.log.tgz.1 to /var/lib/boinc
[2025-10-11 23:25:00] 2025-10-11 23:23:48,318 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-6836606929/log.46676269._011546.job.log.tgz.1 /var/lib/boinc-client/slots/4/log.466762
[2025-10-11 23:25:00] 2025-10-11 23:23:48,323 | INFO     | adding to output.list: log.46676269._011546.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/0d/log.46676269._011546.job.log.tg
[2025-10-11 23:25:00] 2025-10-11 23:23:48,323 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 23:25:00] 2025-10-11 23:23:48,323 | INFO     | summary of transferred files:
[2025-10-11 23:25:00] 2025-10-11 23:23:48,323 | INFO     |  -- lfn=log.46676269._011546.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 23:25:00] 2025-10-11 23:23:48,323 | INFO     | stage-out finished correctly
[2025-10-11 23:25:00] 2025-10-11 23:23:48,820 | INFO     | time since job start (1436s) is within the limit (172800.0s)
[2025-10-11 23:25:00] 2025-10-11 23:23:50,144 | WARNING  | process 2821917 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 23:25:00] 2025-10-11 23:23:50,144 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6836606929/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 23:25:00] 2025-10-11 23:23:50,156 | INFO     | number of running child processes to parent process 2821917: 1
[2025-10-11 23:25:00] 2025-10-11 23:23:50,156 | INFO     | maximum number of monitored processes: 6
[2025-10-11 23:25:00] 2025-10-11 23:23:50,825 | INFO     | time since job start (1438s) is within the limit (172800.0s)
[2025-10-11 23:25:00] 2025-10-11 23:23:51,221 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 23:25:00] 2025-10-11 23:23:52,659 | INFO     | monitor loop #113: job 0:6836606929 is in state 'finished'
[2025-10-11 23:25:00] 2025-10-11 23:23:52,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:25:00] 2025-10-11 23:23:52,787 | INFO     | job 6836606929 has state=finished
[2025-10-11 23:25:00] 2025-10-11 23:23:52,787 | INFO     | preparing for final server update for job 6836606929 in state='finished'
[2025-10-11 23:25:00] 2025-10-11 23:23:52,787 | INFO     | this job has now completed (state=finished)
[2025-10-11 23:25:00] 2025-10-11 23:23:52,787 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 23:25:00] 2025-10-11 23:23:52,787 | INFO     | log transfer has been attempted: DONE
[2025-10-11 23:25:00] 2025-10-11 23:23:52,787 | INFO     | job 6836606929 has finished - writing final server update
[2025-10-11 23:25:00] 2025-10-11 23:23:52,787 | INFO     | total number of processed events: 400 (read)
[2025-10-11 23:25:00] 2025-10-11 23:23:52,788 | INFO     | executing command: lscpu
[2025-10-11 23:25:00] 2025-10-11 23:23:52,794 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 23:25:00] 2025-10-11 23:23:52,831 | INFO     | time since job start (1440s) is within the limit (172800.0s)
[2025-10-11 23:25:00] 2025-10-11 23:23:54,836 | INFO     | time since job start (1442s) is within the limit (172800.0s)
[2025-10-11 23:25:00] 2025-10-11 23:23:55,162 | INFO     | monitor loop #114: job 0:6836606929 is in state 'finished'
[2025-10-11 23:25:00] 2025-10-11 23:23:55,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:25:00] 2025-10-11 23:23:56,841 | INFO     | time since job start (1444s) is within the limit (172800.0s)
[2025-10-11 23:25:00] 2025-10-11 23:23:57,380 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 23:25:00] 2025-10-11 23:23:57,380 | INFO     | found 32 cores (32 cores per socket, 1 socket) , CPU MHz: 4299.979999999998
[2025-10-11 23:25:00] 2025-10-11 23:23:57,381 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6836606929/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 23:25:00] 2025-10-11 23:23:57,381 | INFO     | extracted standard info from prmon json
[2025-10-11 23:25:00] 2025-10-11 23:23:57,381 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 23:25:00] 2025-10-11 23:23:57,381 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 23:25:00] 2025-10-11 23:23:57,381 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 23:25:00] 2025-10-11 23:23:57,381 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | fitting pss+swap vs Time
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | sum of square deviations: 1518168.0
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | sum of deviations: -111748767.0
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | mean x: 1760224401.0
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | mean y: 2771082.0588235296
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | -- intersect: 129568739048.09656
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | intersect: 129568739048.09656
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | chi2: 0.04117642391775623
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | -- intersect: 129568739048.09656
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | current memory leak: -73.61 B/s (using 17 data points, chi2=0.04)
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | ..............................
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | . Timing measurements:
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | . get job = 0 s
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | . initial setup = 2 s
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | . payload setup = 1 s
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | . stage-in = 0 s
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | . payload execution = 1419 s
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | . stage-out = 0 s
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | . log creation = 0 s
[2025-10-11 23:25:00] 2025-10-11 23:23:57,382 | INFO     | ..............................
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | 
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | job summary report
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | --------------------------------------------------
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | PanDA job id: 6836606929
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | task id: 46676269
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | errors: (none)
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | pilot state: finished 
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | transexitcode: 0
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | exeerrorcode: 0
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | exeerrordiag: 
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | exitcode: 0
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | exitmsg: OK
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | cpuconsumptiontime: 12856 s
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | nevents: 400
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | neventsw: 0
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | pid: 2821917
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | pgrp: 2821917
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | corecount: 12
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | event service: False
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | sizes: {0: 2348689, 1: 2348888, 2: 2349150, 11: 2349178, 1424: 2382958, 1427: 2382958, 1433: 2383280}
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | --------------------------------------------------
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | 
[2025-10-11 23:25:00] 2025-10-11 23:23:57,400 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | job 6836606929 has completed (purged errors)
[2025-10-11 23:25:00] 2025-10-11 23:23:57,406 | INFO     | overall cleanup function is called
[2025-10-11 23:25:00] 2025-10-11 23:23:58,412 | INFO     | --- collectZombieJob: --- 10, [2821917]
[2025-10-11 23:25:00] 2025-10-11 23:23:58,412 | INFO     | zombie collector waiting for pid 2821917
[2025-10-11 23:25:00] 2025-10-11 23:23:58,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:25:00] 2025-10-11 23:23:58,412 | INFO     | collected zombie processes
[2025-10-11 23:25:00] 2025-10-11 23:23:58,412 | INFO     | will attempt to kill all subprocesses of pid=2821917
[2025-10-11 23:25:00] 2025-10-11 23:23:58,425 | INFO     | process IDs to be killed: [2821917] (in reverse order)
[2025-10-11 23:25:00] 2025-10-11 23:23:58,435 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:25:00] 2025-10-11 23:23:58,435 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:25:00] 2025-10-11 23:23:58,436 | INFO     | did not find any defunct processes belonging to 2821917
[2025-10-11 23:25:00] 2025-10-11 23:23:58,436 | INFO     | did not find any defunct processes belonging to 2821917
[2025-10-11 23:25:00] 2025-10-11 23:23:58,436 | INFO     | ready for new job
[2025-10-11 23:25:00] 2025-10-11 23:23:58,436 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:25:00] 2025-10-11 23:23:58,436 | INFO     | ***************************************
[2025-10-11 23:25:00] 2025-10-11 23:23:58,436 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 23:25:00] 2025-10-11 23:23:58,436 | INFO     | ***************************************
[2025-10-11 23:25:00] 2025-10-11 23:23:58,436 | INFO     | 
[2025-10-11 23:25:00] 2025-10-11 23:23:58,437 | INFO     | pilot is running in a VM
[2025-10-11 23:25:00] 2025-10-11 23:23:58,437 | INFO     | architecture information:
[2025-10-11 23:25:00] 2025-10-11 23:23:58,437 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:25:00] 2025-10-11 23:23:58,439 | INFO     | cat /etc/os-release:
[2025-10-11 23:25:00] NAME="CentOS Linux"
[2025-10-11 23:25:00] VERSION="7 (Core)"
[2025-10-11 23:25:00] ID="centos"
[2025-10-11 23:25:00] ID_LIKE="rhel fedora"
[2025-10-11 23:25:00] VERSION_ID="7"
[2025-10-11 23:25:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:25:00] ANSI_COLOR="0;31"
[2025-10-11 23:25:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:25:00] HOME_URL="https://www.centos.org/"
[2025-10-11 23:25:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:25:00] 
[2025-10-11 23:25:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:25:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:25:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:25:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:25:00] 
[2025-10-11 23:25:00] 2025-10-11 23:23:58,439 | INFO     | ***************************************
[2025-10-11 23:25:00] 2025-10-11 23:23:58,942 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-10-11 23:25:00] 2025-10-11 23:23:58,946 | INFO     | sufficient remaining disk space (25619857408 B)
[2025-10-11 23:25:00] 2025-10-11 23:23:58,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:25:00] 2025-10-11 23:23:58,946 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:25:00] 2025-10-11 23:23:58,946 | INFO     | update_server=False
[2025-10-11 23:25:00] 2025-10-11 23:23:58,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:25:00] 2025-10-11 23:23:58,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:25:00] 2025-10-11 23:23:58,947 | INFO     | aborting loop
[2025-10-11 23:25:00] 2025-10-11 23:23:58,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:25:00] 2025-10-11 23:23:58,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:25:00] 2025-10-11 23:23:59,002 | INFO     | all data control threads have been joined
[2025-10-11 23:25:00] 2025-10-11 23:23:59,571 | INFO     | all job control threads have been joined
[2025-10-11 23:25:00] 2025-10-11 23:23:59,951 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:23:59,952 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:23:59,952 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:00,007 | INFO     | [data] control thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:00,384 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:00,425 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:00,429 | INFO     | all payload control threads have been joined
[2025-10-11 23:25:00] 2025-10-11 23:24:00,576 | INFO     | [job] control thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:00,714 | INFO     | [job] validate thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:00,750 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:00,861 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:00,890 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:00,952 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:01,165 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:01,434 | INFO     | [payload] control thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:01,746 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:25:00] 2025-10-11 23:24:05,752 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:09,704 | INFO     | job.realtimelogging is not enabled
[2025-10-11 23:25:00] 2025-10-11 23:24:10,709 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:25:00] 2025-10-11 23:24:28,918 | INFO     | 1448s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-11 23:25:00] 2025-10-11 23:24:29,940 | INFO     | PID=2809237 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 23:25:00] 2025-10-11 23:24:29,940 | INFO     | .. there are 2 such processes running
[2025-10-11 23:25:00] 2025-10-11 23:24:29,940 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:25:00] 2025-10-11 23:24:29,940 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:25:00] 2025-10-11 23:24:29,940 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:25:00] 2025-10-11 23:24:54,091 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:25:00] 2025-10-11 23:24:54,933 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139432155465536)>', '<ExcThread(monitor, started 139431642113792)>']
[2025-10-11 23:25:00] 2025-10-11 23:24:55,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:25:00] 2025-10-11 23:24:55,066 | INFO     | [monitor] control thread has ended
[2025-10-11 23:25:00] 2025-10-11 23:24:59,958 | INFO     | all workflow threads have been joined
[2025-10-11 23:25:00] 2025-10-11 23:24:59,958 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:25:00] 2025-10-11 23:24:59,958 | INFO     | traces error code: 0
[2025-10-11 23:25:00] 2025-10-11 23:24:59,958 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:25:00] 2025-10-11 23:24:59,985 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:25:00] 2025-10-11 23:24:59,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:25:00] 2025-10-11 23:24:59,986 [wrapper] pilotpid: 2809237
[2025-10-11 23:25:00] 2025-10-11 23:24:59,987 [wrapper] Pilot exit status: 0
[2025-10-11 23:25:00] 2025-10-11 23:24:59,989 [wrapper] pandaids: 6836606929
[2025-10-11 23:25:00] 2025-10-11 23:24:59,996 [wrapper] cleanup supervisor_pilot 2840141 2809238
[2025-10-11 23:25:00] 2025-10-11 23:24:59,996 [wrapper] Test setup, not cleaning
[2025-10-11 23:25:00] 2025-10-11 23:24:59,997 [wrapper] apfmon messages muted
[2025-10-11 23:25:00] 2025-10-11 23:24:59,998 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:25:00] 2025-10-11 23:24:59,998 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:25:00]  *** Error codes and diagnostics ***
[2025-10-11 23:25:00]     "exeErrorCode": 0,
[2025-10-11 23:25:00]     "exeErrorDiag": "",
[2025-10-11 23:25:00]     "pilotErrorCode": 0,
[2025-10-11 23:25:00]     "pilotErrorDiag": "",
[2025-10-11 23:25:00]  *** Listing of results directory ***
[2025-10-11 23:25:00] total 408872
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc    557409 Oct  8 23:22 pilot3.tar.gz
[2025-10-11 23:25:00] -rwx------ 1 boinc boinc     36292 Oct  8 23:48 runpilot2-wrapper.sh
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc      5112 Oct  8 23:48 queuedata.json
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc       100 Oct 11 22:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:25:00] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 22:59 run_atlas
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc       105 Oct 11 22:59 job.xml
[2025-10-11 23:25:00] -rw-r--r-- 2 boinc boinc 221016702 Oct 11 22:59 EVNT.46676267._000472.pool.root.1
[2025-10-11 23:25:00] -rw-r--r-- 2 boinc boinc     15120 Oct 11 22:59 start_atlas.sh
[2025-10-11 23:25:00] drwxrwx--x 2 boinc boinc      4096 Oct 11 22:59 shared
[2025-10-11 23:25:00] -rw-r--r-- 2 boinc boinc    569673 Oct 11 22:59 input.tar.gz
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc      6938 Oct 11 22:59 init_data.xml
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc         0 Oct 11 22:59 boinc_lockfile
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc      2548 Oct 11 22:59 pandaJob.out
[2025-10-11 23:25:00] -rw------- 1 boinc boinc    975520 Oct 11 22:59 agis_schedconf.cvmfs.json
[2025-10-11 23:25:00] -rw------- 1 boinc boinc   1560580 Oct 11 22:59 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:25:00] drwx------ 5 boinc boinc      4096 Oct 11 22:59 pilot3
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc       529 Oct 11 23:23 boinc_task_state.xml
[2025-10-11 23:25:00] -rw------- 1 boinc boinc 192607123 Oct 11 23:23 HITS.46676269._011546.pool.root.1
[2025-10-11 23:25:00] -rw------- 1 boinc boinc      1022 Oct 11 23:23 memory_monitor_summary.json
[2025-10-11 23:25:00] -rw------- 1 boinc boinc    323327 Oct 11 23:23 log.46676269._011546.job.log.tgz.1
[2025-10-11 23:25:00] -rw------- 1 boinc boinc        95 Oct 11 23:23 pilot_heartbeat.json
[2025-10-11 23:25:00] -rw------- 1 boinc boinc      7731 Oct 11 23:23 heartbeat.json
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc      8192 Oct 11 23:24 boinc_mmap_file
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc        27 Oct 11 23:24 wrapper_checkpoint.txt
[2025-10-11 23:25:00] -rw------- 1 boinc boinc      5079 Oct 11 23:24 pilotlog.txt
[2025-10-11 23:25:00] -rw------- 1 boinc boinc    255945 Oct 11 23:24 log.46676269._011546.job.log.1
[2025-10-11 23:25:00] -rw------- 1 boinc boinc       357 Oct 11 23:25 output.list
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc       620 Oct 11 23:25 runtime_log
[2025-10-11 23:25:00] -rw------- 1 boinc boinc    593920 Oct 11 23:25 result.tar.gz
[2025-10-11 23:25:00] -rw------- 1 boinc boinc       641 Oct 11 23:25 UAtMDmV4sQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmWFNMDmrnzcim.diag
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc      8762 Oct 11 23:25 runtime_log.err
[2025-10-11 23:25:00] -rw-r--r-- 1 boinc boinc     22441 Oct 11 23:25 stderr.txt
[2025-10-11 23:25:00] HITS file was successfully produced:
[2025-10-11 23:25:00] -rw------- 1 boinc boinc 192607123 Oct 11 23:23 shared/HITS.pool.root.1
[2025-10-11 23:25:00]  *** Contents of shared directory: ***
[2025-10-11 23:25:00] total 405100
[2025-10-11 23:25:00] -rw-r--r-- 2 boinc boinc 221016702 Oct 11 22:59 ATLAS.root_0
[2025-10-11 23:25:00] -rw-r--r-- 2 boinc boinc     15120 Oct 11 22:59 start_atlas.sh
[2025-10-11 23:25:00] -rw-r--r-- 2 boinc boinc    569673 Oct 11 22:59 input.tar.gz
[2025-10-11 23:25:00] -rw------- 1 boinc boinc 192607123 Oct 11 23:23 HITS.pool.root.1
[2025-10-11 23:25:00] -rw------- 1 boinc boinc    593920 Oct 11 23:25 result.tar.gz
23:25:01 (2805386): run_atlas exited; CPU time 12859.209351
23:25:01 (2805386): called boinc_finish(0)

</stderr_txt>
]]>

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