Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:58:10 (3081368): wrapper (7.7.26015): starting
15:58:10 (3081368): wrapper: running run_atlas (--nthreads 11)
[2025-10-11 15:58:10] Arguments: --nthreads 11
[2025-10-11 15:58:10] Threads: 11
[2025-10-11 15:58:10] Checking for CVMFS
[2025-10-11 15:58:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 15:58:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 15:58:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 15:58:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 15:58:10] 2.13.2.0 4499 49278 137776 151594 1 65 40927190 40960001 8910 16776704 0 41758687 99.787 24782450 38434 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 15:58:10] CVMFS is ok
[2025-10-11 15:58:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 15:58:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 15:58:10] Further information can be found at the LHC@home message board.
[2025-10-11 15:58:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 15:58:10] Checking for apptainer binary...
[2025-10-11 15:58:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 15:58:10] Running /usr/bin/apptainer --version
[2025-10-11 15:58:10] apptainer version 1.4.3-1.el9
[2025-10-11 15:58:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 15:58:11] c-211-8.aglt2.org
[2025-10-11 15:58:11] apptainer works
[2025-10-11 15:58:11] Set ATHENA_PROC_NUMBER=11
[2025-10-11 15:58:11] Set ATHENA_CORE_NUMBER=11
[2025-10-11 15:58:11] Starting ATLAS job with PandaID=6838452350
[2025-10-11 15:58:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 21:34:42]  *** The last 200 lines of the pilot log: ***
[2025-10-11 21:34:42] 2025-10-12 01:34:07,029 | INFO     | current chi2=2.2951105099994344 (change=-0.028690244251353532 %)
[2025-10-11 21:34:42] 2025-10-12 01:34:07,029 | INFO     | right removable region: 322
[2025-10-11 21:34:42] 2025-10-12 01:34:07,029 | INFO     | sum of square deviations: 10449877542.303324
[2025-10-11 21:34:42] 2025-10-12 01:34:07,041 | INFO     | sum of deviations: 3937313794.1145515
[2025-10-11 21:34:42] 2025-10-12 01:34:07,041 | INFO     | mean x: 1760222955.0464396
[2025-10-11 21:34:42] 2025-10-12 01:34:07,041 | INFO     | mean y: 2646861.9256965946
[2025-10-11 21:34:42] 2025-10-12 01:34:07,041 | INFO     | -- intersect: -660571447.9123935
[2025-10-11 21:34:42] 2025-10-12 01:34:07,046 | INFO     | intersect: -660571447.9123935
[2025-10-11 21:34:42] 2025-10-12 01:34:07,046 | INFO     | chi2: 0.11283233166310791
[2025-10-11 21:34:42] 2025-10-12 01:34:07,047 | INFO     | current chi2=0.11283233166310791 (change=95.08238478962461 %)
[2025-10-11 21:34:42] 2025-10-12 01:34:07,047 | INFO     | sum of square deviations: 9972028396.481113
[2025-10-11 21:34:42] 2025-10-12 01:34:07,059 | INFO     | sum of deviations: -5022252642.915094
[2025-10-11 21:34:42] 2025-10-12 01:34:07,059 | INFO     | mean x: 1760223107.5566037
[2025-10-11 21:34:42] 2025-10-12 01:34:07,059 | INFO     | mean y: 2649707.4119496853
[2025-10-11 21:34:42] 2025-10-12 01:34:07,059 | INFO     | -- intersect: 889157928.4641374
[2025-10-11 21:34:42] 2025-10-12 01:34:07,059 | INFO     | intersect: 889157928.4641374
[2025-10-11 21:34:42] 2025-10-12 01:34:07,064 | INFO     | chi2: 0.07954596608968278
[2025-10-11 21:34:42] 2025-10-12 01:34:07,064 | INFO     | current chi2=0.07954596608968278 (change=29.500733595411965 %)
[2025-10-11 21:34:42] 2025-10-12 01:34:07,065 | INFO     | sum of square deviations: 9508950460.453672
[2025-10-11 21:34:42] 2025-10-12 01:34:07,076 | INFO     | sum of deviations: 10325790505.753998
[2025-10-11 21:34:42] 2025-10-12 01:34:07,077 | INFO     | mean x: 1760223260.0702875
[2025-10-11 21:34:42] 2025-10-12 01:34:07,077 | INFO     | mean y: 2644649.5111821084
[2025-10-11 21:34:42] 2025-10-12 01:34:07,077 | INFO     | -- intersect: -1908785713.1172884
[2025-10-11 21:34:42] 2025-10-12 01:34:07,077 | INFO     | intersect: -1908785713.1172884
[2025-10-11 21:34:42] 2025-10-12 01:34:07,078 | INFO     | chi2: 0.0058258915435921215
[2025-10-11 21:34:42] 2025-10-12 01:34:07,078 | INFO     | current chi2=0.0058258915435921215 (change=92.67606915852426 %)
[2025-10-11 21:34:42] 2025-10-12 01:34:07,078 | INFO     | sum of square deviations: 9060507435.428589
[2025-10-11 21:34:42] 2025-10-12 01:34:07,090 | INFO     | sum of deviations: 7540325667.857144
[2025-10-11 21:34:42] 2025-10-12 01:34:07,090 | INFO     | mean x: 1760223412.5714285
[2025-10-11 21:34:42] 2025-10-12 01:34:07,090 | INFO     | mean y: 2645595.0064935065
[2025-10-11 21:34:42] 2025-10-12 01:34:07,090 | INFO     | -- intersect: -1462245623.6769557
[2025-10-11 21:34:42] 2025-10-12 01:34:07,090 | INFO     | intersect: -1462245623.6769557
[2025-10-11 21:34:42] 2025-10-12 01:34:07,091 | INFO     | chi2: 0.003917520410474491
[2025-10-11 21:34:42] 2025-10-12 01:34:07,091 | INFO     | current chi2=0.003917520410474491 (change=32.756722620705865 %)
[2025-10-11 21:34:42] 2025-10-12 01:34:07,101 | INFO     | sum of square deviations: 8626315347.768993
[2025-10-11 21:34:42] 2025-10-12 01:34:07,104 | INFO     | sum of deviations: 6158649270.155116
[2025-10-11 21:34:42] 2025-10-12 01:34:07,113 | INFO     | mean x: 1760223565.0858085
[2025-10-11 21:34:42] 2025-10-12 01:34:07,113 | INFO     | mean y: 2646078.570957096
[2025-10-11 21:34:42] 2025-10-12 01:34:07,113 | INFO     | -- intersect: -1254043381.225946
[2025-10-11 21:34:42] 2025-10-12 01:34:07,113 | INFO     | intersect: -1254043381.225946
[2025-10-11 21:34:42] 2025-10-12 01:34:07,114 | INFO     | chi2: 0.003450541713788134
[2025-10-11 21:34:42] 2025-10-12 01:34:07,114 | INFO     | current chi2=0.003450541713788134 (change=11.920261996281376 %)
[2025-10-11 21:34:42] 2025-10-12 01:34:07,114 | INFO     | left removable region: 50
[2025-10-11 21:34:42] 2025-10-12 01:34:07,115 | INFO     | sum of square deviations: 6240082845.1727915
[2025-10-11 21:34:42] 2025-10-12 01:34:07,126 | INFO     | sum of deviations: 4595801212.827207
[2025-10-11 21:34:42] 2025-10-12 01:34:07,127 | INFO     | mean x: 1760224144.6801472
[2025-10-11 21:34:42] 2025-10-12 01:34:07,127 | INFO     | mean y: 2646711.319852941
[2025-10-11 21:34:42] 2025-10-12 01:34:07,127 | INFO     | -- intersect: -1293752785.2391942
[2025-10-11 21:34:42] 2025-10-12 01:34:07,127 | INFO     | intersect: -1293752785.2391942
[2025-10-11 21:34:42] 2025-10-12 01:34:07,128 | INFO     | chi2: 0.0032878099865422013
[2025-10-11 21:34:42] 2025-10-12 01:34:07,128 | INFO     | -- intersect: -1293752785.2391942
[2025-10-11 21:34:42] 2025-10-12 01:34:07,128 | INFO     | current memory leak: 0.74 B/s (using 272 data points, chi2=0.00)
[2025-10-11 21:34:42] 2025-10-12 01:34:07,130 | INFO     | could have reported an average CPU frequency of 2453 MHz (14 samples)
[2025-10-11 21:34:42] 2025-10-12 01:34:07,130 | INFO     | ..............................
[2025-10-11 21:34:42] 2025-10-12 01:34:07,130 | INFO     | . Timing measurements:
[2025-10-11 21:34:42] 2025-10-12 01:34:07,131 | INFO     | . get job = 0 s
[2025-10-11 21:34:42] 2025-10-12 01:34:07,131 | INFO     | . initial setup = 5 s
[2025-10-11 21:34:42] 2025-10-12 01:34:07,131 | INFO     | . payload setup = 29 s
[2025-10-11 21:34:42] 2025-10-12 01:34:07,131 | INFO     | . stage-in = 0 s
[2025-10-11 21:34:42] 2025-10-12 01:34:07,131 | INFO     | . payload execution = 20026 s
[2025-10-11 21:34:42] 2025-10-12 01:34:07,131 | INFO     | . stage-out = 3 s
[2025-10-11 21:34:42] 2025-10-12 01:34:07,131 | INFO     | . log creation = 0 s
[2025-10-11 21:34:42] 2025-10-12 01:34:07,131 | INFO     | ..............................
[2025-10-11 21:34:42] 2025-10-12 01:34:07,360 | INFO     | 
[2025-10-11 21:34:42] 2025-10-12 01:34:07,361 | INFO     | job summary report
[2025-10-11 21:34:42] 2025-10-12 01:34:07,361 | INFO     | --------------------------------------------------
[2025-10-11 21:34:42] 2025-10-12 01:34:07,361 | INFO     | PanDA job id: 6838452350
[2025-10-11 21:34:42] 2025-10-12 01:34:07,361 | INFO     | task id: 46676269
[2025-10-11 21:34:42] 2025-10-12 01:34:07,361 | INFO     | errors: (none)
[2025-10-11 21:34:42] 2025-10-12 01:34:07,361 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 21:34:42] 2025-10-12 01:34:07,361 | INFO     | pilot state: finished 
[2025-10-11 21:34:42] 2025-10-12 01:34:07,362 | INFO     | transexitcode: 0
[2025-10-11 21:34:42] 2025-10-12 01:34:07,362 | INFO     | exeerrorcode: 0
[2025-10-11 21:34:42] 2025-10-12 01:34:07,362 | INFO     | exeerrordiag: 
[2025-10-11 21:34:42] 2025-10-12 01:34:07,362 | INFO     | exitcode: 0
[2025-10-11 21:34:42] 2025-10-12 01:34:07,362 | INFO     | exitmsg: OK
[2025-10-11 21:34:42] 2025-10-12 01:34:07,362 | INFO     | cpuconsumptiontime: 63541 s
[2025-10-11 21:34:42] 2025-10-12 01:34:07,362 | INFO     | nevents: 400
[2025-10-11 21:34:42] 2025-10-12 01:34:07,362 | INFO     | neventsw: 0
[2025-10-11 21:34:42] 2025-10-12 01:34:07,363 | INFO     | pid: 3094840
[2025-10-11 21:34:42] 2025-10-12 01:34:07,363 | INFO     | pgrp: 3094840
[2025-10-11 21:34:42] 2025-10-12 01:34:07,363 | INFO     | corecount: 11
[2025-10-11 21:34:42] 2025-10-12 01:34:07,363 | INFO     | event service: False
[2025-10-11 21:34:42] 2025-10-12 01:34:07,363 | INFO     | sizes: {0: 2348685, 1: 2348884, 2: 2348884, 13: 2348912, 15: 2349230, 23: 2349258, 20056: 2382958, 20057: 2382957, 20061: 2392011, 20063: 2392067, 20071: 2392261}
[2025-10-11 21:34:42] 2025-10-12 01:34:07,363 | INFO     | --------------------------------------------------
[2025-10-11 21:34:42] 2025-10-12 01:34:07,363 | INFO     | 
[2025-10-11 21:34:42] 2025-10-12 01:34:07,363 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 21:34:42] 2025-10-12 01:34:07,423 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,424 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,424 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,424 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,424 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,424 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,424 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,425 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,425 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,426 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,426 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,426 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,427 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,427 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,427 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 21:34:42] 2025-10-12 01:34:07,427 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,427 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 21:34:42] 2025-10-12 01:34:07,427 | INFO     | job 6838452350 has completed (purged errors)
[2025-10-11 21:34:42] 2025-10-12 01:34:07,432 | INFO     | overall cleanup function is called
[2025-10-11 21:34:42] 2025-10-12 01:34:08,333 | INFO     | PID=3086359 has CPU usage=12.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 21:34:42] 2025-10-12 01:34:08,334 | INFO     | .. there are 9 such processes running
[2025-10-11 21:34:42] 2025-10-12 01:34:08,446 | INFO     | --- collectZombieJob: --- 10, [3094840]
[2025-10-11 21:34:42] 2025-10-12 01:34:08,446 | INFO     | zombie collector waiting for pid 3094840
[2025-10-11 21:34:42] 2025-10-12 01:34:08,446 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 21:34:42] 2025-10-12 01:34:08,446 | INFO     | collected zombie processes
[2025-10-11 21:34:42] 2025-10-12 01:34:08,446 | INFO     | will attempt to kill all subprocesses of pid=3094840
[2025-10-11 21:34:42] 2025-10-12 01:34:09,040 | INFO     | process IDs to be killed: [3094840] (in reverse order)
[2025-10-11 21:34:42] 2025-10-12 01:34:09,163 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 21:34:42] 2025-10-12 01:34:09,164 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 21:34:42] 2025-10-12 01:34:09,176 | INFO     | did not find any defunct processes belonging to 3094840
[2025-10-11 21:34:42] 2025-10-12 01:34:09,187 | INFO     | did not find any defunct processes belonging to 3094840
[2025-10-11 21:34:42] 2025-10-12 01:34:09,188 | INFO     | ready for new job
[2025-10-11 21:34:42] 2025-10-12 01:34:09,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 21:34:42] 2025-10-12 01:34:09,192 | INFO     | ***************************************
[2025-10-11 21:34:42] 2025-10-12 01:34:09,192 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 21:34:42] 2025-10-12 01:34:09,192 | INFO     | ***************************************
[2025-10-11 21:34:42] 2025-10-12 01:34:09,192 | INFO     | 
[2025-10-11 21:34:42] 2025-10-12 01:34:09,196 | INFO     | architecture information:
[2025-10-11 21:34:42] 2025-10-12 01:34:09,197 | INFO     | executing command: cat /etc/os-release
[2025-10-11 21:34:42] 2025-10-12 01:34:09,224 | INFO     | cat /etc/os-release:
[2025-10-11 21:34:42] NAME="CentOS Linux"
[2025-10-11 21:34:42] VERSION="7 (Core)"
[2025-10-11 21:34:42] ID="centos"
[2025-10-11 21:34:42] ID_LIKE="rhel fedora"
[2025-10-11 21:34:42] VERSION_ID="7"
[2025-10-11 21:34:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 21:34:42] ANSI_COLOR="0;31"
[2025-10-11 21:34:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 21:34:42] HOME_URL="https://www.centos.org/"
[2025-10-11 21:34:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 21:34:42] 
[2025-10-11 21:34:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 21:34:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 21:34:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 21:34:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 21:34:42] 
[2025-10-11 21:34:42] 2025-10-12 01:34:09,224 | INFO     | ***************************************
[2025-10-11 21:34:42] 2025-10-12 01:34:09,728 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 21:34:42] 2025-10-12 01:34:09,756 | INFO     | sufficient remaining disk space (63314067456 B)
[2025-10-11 21:34:42] 2025-10-12 01:34:09,757 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 21:34:42] 2025-10-12 01:34:09,757 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 21:34:42] 2025-10-12 01:34:09,757 | INFO     | update_server=False
[2025-10-11 21:34:42] 2025-10-12 01:34:09,758 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 21:34:42] 2025-10-12 01:34:09,759 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:34:42] 2025-10-12 01:34:09,759 | INFO     | aborting loop
[2025-10-11 21:34:42] 2025-10-12 01:34:09,845 | INFO     | all data control threads have been joined
[2025-10-11 21:34:42] 2025-10-12 01:34:10,004 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 21:34:42] 2025-10-12 01:34:10,030 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 21:34:42] 2025-10-12 01:34:10,764 | INFO     | [job] retrieve thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:10,769 | INFO     | [job] job monitor thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:10,776 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:10,851 | INFO     | [data] control thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:11,196 | INFO     | all payload control threads have been joined
[2025-10-11 21:34:42] 2025-10-12 01:34:11,253 | INFO     | all job control threads have been joined
[2025-10-11 21:34:42] 2025-10-12 01:34:11,340 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:11,363 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:11,674 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:11,721 | INFO     | [job] validate thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:11,762 | INFO     | [payload] validate_post thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:11,854 | INFO     | [data] copytool_in thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:12,040 | INFO     | [data] copytool_out thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:12,193 | INFO     | [payload] failed_post thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:12,202 | INFO     | [payload] control thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:12,259 | INFO     | [job] control thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:12,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:34:42] 2025-10-12 01:34:13,397 | INFO     | [job] queue monitor thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:14,013 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 21:34:42] 2025-10-12 01:34:29,581 | INFO     | [monitor] cgroup control has ended
[2025-10-11 21:34:42] 2025-10-12 01:34:30,936 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140585145833280)>', '<ExcThread(monitor, started 140584035526400)>']
[2025-10-11 21:34:42] 2025-10-12 01:34:35,963 | INFO     | all workflow threads have been joined
[2025-10-11 21:34:42] 2025-10-12 01:34:35,963 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 21:34:42] 2025-10-12 01:34:35,963 | INFO     | traces error code: 0
[2025-10-11 21:34:42] 2025-10-12 01:34:35,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 21:34:42] 2025-10-12 01:34:41,032 | INFO     | PID=3086359 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 21:34:42] 2025-10-12 01:34:41,033 | INFO     | .. there are 9 such processes running
[2025-10-11 21:34:42] 2025-10-12 01:34:41,033 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 21:34:42] 2025-10-12 01:34:41,033 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 21:34:42] 2025-10-12 01:34:41,033 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 21:34:42] 2025-10-12 01:34:41,033 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 21:34:42] 2025-10-12 01:34:41,033 | INFO     | [monitor] control thread has ended
[2025-10-11 21:34:42] 2025-10-12 01:34:41,597 [wrapper] ==== pilot stdout END ====
[2025-10-11 21:34:42] 2025-10-12 01:34:41,613 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 21:34:42] 2025-10-12 01:34:41,628 [wrapper] pilotpid: 3086359
[2025-10-11 21:34:42] 2025-10-12 01:34:41,633 [wrapper] Pilot exit status: 0
[2025-10-11 21:34:42] 2025-10-12 01:34:41,659 [wrapper] pandaids: 6838452350
[2025-10-11 21:34:42] 2025-10-12 01:34:41,744 [wrapper] cleanup supervisor_pilot 3573837 3086360
[2025-10-11 21:34:42] 2025-10-12 01:34:41,778 [wrapper] Test setup, not cleaning
[2025-10-11 21:34:42] 2025-10-12 01:34:41,782 [wrapper] apfmon messages muted
[2025-10-11 21:34:42] 2025-10-12 01:34:41,799 [wrapper] ==== wrapper stdout END ====
[2025-10-11 21:34:42] 2025-10-12 01:34:41,804 [wrapper] ==== wrapper stderr END ====
[2025-10-11 21:34:42]  *** Error codes and diagnostics ***
[2025-10-11 21:34:42]     "exeErrorCode": 0,
[2025-10-11 21:34:42]     "exeErrorDiag": "",
[2025-10-11 21:34:42]     "pilotErrorCode": 0,
[2025-10-11 21:34:42]     "pilotErrorDiag": "",
[2025-10-11 21:34:42]  *** Listing of results directory ***
[2025-10-11 21:34:42] total 411916
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 08:51 pilot3.tar.gz
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 09:37 queuedata.json
[2025-10-11 21:34:42] -rwx------. 1 boincer umatlas     36292 Oct 11 09:37 runpilot2-wrapper.sh
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas       100 Oct 11 15:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 21:34:42] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 15:58 run_atlas
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas       105 Oct 11 15:58 job.xml
[2025-10-11 21:34:42] -rw-r--r--. 2 boincer umatlas 220016993 Oct 11 15:58 EVNT.46676267._002341.pool.root.1
[2025-10-11 21:34:42] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 15:58 start_atlas.sh
[2025-10-11 21:34:42] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 15:58 shared
[2025-10-11 21:34:42] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 15:58 input.tar.gz
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas         0 Oct 11 15:58 boinc_lockfile
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas      2549 Oct 11 15:58 pandaJob.out
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas    975512 Oct 11 15:58 agis_schedconf.cvmfs.json
[2025-10-11 21:34:42] drwx------. 5 boincer umatlas      4096 Oct 11 15:58 pilot3
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas      6612 Oct 11 21:27 init_data.xml
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas 191390362 Oct 11 21:33 HITS.46676269._058378.pool.root.1
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas       531 Oct 11 21:33 boinc_task_state.xml
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas      1043 Oct 11 21:33 memory_monitor_summary.json
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas   1560580 Oct 11 21:33 agis_ddmendpoints.agis.ALL.json
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas    577371 Oct 11 21:33 log.46676269._058378.job.log.tgz.1
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas        95 Oct 11 21:33 pilot_heartbeat.json
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas      7827 Oct 11 21:34 heartbeat.json
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 21:34 boinc_mmap_file
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas        28 Oct 11 21:34 wrapper_checkpoint.txt
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas       822 Oct 11 21:34 pilotlog.txt
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas   2670439 Oct 11 21:34 log.46676269._058378.job.log.1
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas       357 Oct 11 21:34 output.list
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas       620 Oct 11 21:34 runtime_log
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas   3266560 Oct 11 21:34 result.tar.gz
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas      8701 Oct 11 21:34 runtime_log.err
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas       656 Oct 11 21:34 AIBLDm9xoR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhWgNDman3cDn.diag
[2025-10-11 21:34:42] -rw-r--r--. 1 boincer umatlas     21235 Oct 11 21:34 stderr.txt
[2025-10-11 21:34:42] HITS file was successfully produced:
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas 191390362 Oct 11 21:33 shared/HITS.pool.root.1
[2025-10-11 21:34:42]  *** Contents of shared directory: ***
[2025-10-11 21:34:42] total 405544
[2025-10-11 21:34:42] -rw-r--r--. 2 boincer umatlas 220016993 Oct 11 15:58 ATLAS.root_0
[2025-10-11 21:34:42] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 15:58 start_atlas.sh
[2025-10-11 21:34:42] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 15:58 input.tar.gz
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas 191390362 Oct 11 21:33 HITS.pool.root.1
[2025-10-11 21:34:42] -rw-------. 1 boincer umatlas   3266560 Oct 11 21:34 result.tar.gz
21:34:44 (3081368): run_atlas exited; CPU time 64208.570558
21:34:44 (3081368): called boinc_finish(0)

</stderr_txt>
]]>

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