Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
07:41:14 (3555304): wrapper (7.7.26015): starting
07:41:14 (3555304): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 07:41:14] Arguments: --nthreads 4
[2025-10-13 07:41:14] Threads: 4
[2025-10-13 07:41:14] Checking for CVMFS
[2025-10-13 07:41:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:41:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:41:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:41:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:41:14] 2.13.2.0 15963 45645 46364 151649 0 57 23076739 33554432 0 130560 3 23771102 99.990 1423698 282 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2025-10-13 07:41:14] CVMFS is ok
[2025-10-13 07:41:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:41:14] Checking for apptainer binary...
[2025-10-13 07:41:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:41:14] Running /usr/bin/apptainer --version
[2025-10-13 07:41:14] apptainer version 1.4.0
[2025-10-13 07:41:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:41:14] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2025-10-13 07:41:14] apptainer works
[2025-10-13 07:41:14] Set ATHENA_PROC_NUMBER=4
[2025-10-13 07:41:14] Set ATHENA_CORE_NUMBER=4
[2025-10-13 07:41:14] Starting ATLAS job with PandaID=6838199260
[2025-10-13 07:41:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:47:49]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:47:49]  lfn=log.46676269._053340.job.log.tgz.1
[2025-10-13 08:47:49]  mtime=0
[2025-10-13 08:47:49]  protocol_id=None
[2025-10-13 08:47:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 08:47:49]  replicas=None
[2025-10-13 08:47:49]  scope=mc23_13p6TeV
[2025-10-13 08:47:49]  status=None
[2025-10-13 08:47:49]  status_code=0
[2025-10-13 08:47:49]  storage_token=
[2025-10-13 08:47:49]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-6838199260/log.46676269._053340.job.log.tgz.1
[2025-10-13 08:47:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/26/log.46676269._053340.job.log.tgz.1
[2025-10-13 08:47:49]  workdir=None
[2025-10-13 08:47:49] ]
[2025-10-13 08:47:49] 2025-10-13 05:47:14,042 | INFO     | transferring file log.46676269._053340.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-6838199260/log.46676269._053340.job.log.tgz.1 to /home/ek/BOINC/slots/
[2025-10-13 08:47:49] 2025-10-13 05:47:14,042 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-6838199260/log.46676269._053340.job.log.tgz.1 /home/ek/BOINC/slots/0/log.46676269._053340.job
[2025-10-13 08:47:49] 2025-10-13 05:47:14,052 | INFO     | adding to output.list: log.46676269._053340.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/26/log.46676269._053340.job.log.tg
[2025-10-13 08:47:49] 2025-10-13 05:47:14,052 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 08:47:49] 2025-10-13 05:47:14,052 | INFO     | summary of transferred files:
[2025-10-13 08:47:49] 2025-10-13 05:47:14,052 | INFO     |  -- lfn=log.46676269._053340.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 08:47:49] 2025-10-13 05:47:14,052 | INFO     | stage-out finished correctly
[2025-10-13 08:47:49] 2025-10-13 05:47:14,265 | INFO     | monitor loop #302: job 0:6838199260 is in state 'finished'
[2025-10-13 08:47:49] 2025-10-13 05:47:14,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:47:49] 2025-10-13 05:47:14,417 | INFO     | time since job start (3954s) is within the limit (172800.0s)
[2025-10-13 08:47:49] 2025-10-13 05:47:16,136 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 08:47:49] 2025-10-13 05:47:16,166 | INFO     | job 6838199260 has state=finished
[2025-10-13 08:47:49] 2025-10-13 05:47:16,167 | INFO     | preparing for final server update for job 6838199260 in state='finished'
[2025-10-13 08:47:49] 2025-10-13 05:47:16,167 | INFO     | this job has now completed (state=finished)
[2025-10-13 08:47:49] 2025-10-13 05:47:16,167 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 08:47:49] 2025-10-13 05:47:16,167 | INFO     | log transfer has been attempted: DONE
[2025-10-13 08:47:49] 2025-10-13 05:47:16,167 | INFO     | job 6838199260 has finished - writing final server update
[2025-10-13 08:47:49] 2025-10-13 05:47:16,167 | INFO     | total number of processed events: 400 (read)
[2025-10-13 08:47:49] 2025-10-13 05:47:16,167 | INFO     | executing command: lscpu
[2025-10-13 08:47:49] 2025-10-13 05:47:16,182 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 08:47:49] 2025-10-13 05:47:16,423 | INFO     | time since job start (3956s) is within the limit (172800.0s)
[2025-10-13 08:47:49] 2025-10-13 05:47:16,768 | INFO     | monitor loop #303: job 0:6838199260 is in state 'finished'
[2025-10-13 08:47:49] 2025-10-13 05:47:16,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:47:49] 2025-10-13 05:47:18,006 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 08:47:49] 2025-10-13 05:47:18,008 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3875.1424583333333
[2025-10-13 08:47:49] 2025-10-13 05:47:18,011 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-6838199260/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:47:49] 2025-10-13 05:47:18,011 | INFO     | extracted standard info from prmon json
[2025-10-13 08:47:49] 2025-10-13 05:47:18,011 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 08:47:49] 2025-10-13 05:47:18,011 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 08:47:49] 2025-10-13 05:47:18,011 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:47:49] 2025-10-13 05:47:18,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:47:49] 2025-10-13 05:47:18,012 | INFO     | fitting pss+swap vs Time
[2025-10-13 08:47:49] 2025-10-13 05:47:18,012 | INFO     | sum of square deviations: 60482812.4827586
[2025-10-13 08:47:49] 2025-10-13 05:47:18,012 | INFO     | sum of deviations: -10184083568.24138
[2025-10-13 08:47:49] 2025-10-13 05:47:18,012 | INFO     | mean x: 1760332541.5172415
[2025-10-13 08:47:49] 2025-10-13 05:47:18,012 | INFO     | mean y: 2560637.7413793104
[2025-10-13 08:47:49] 2025-10-13 05:47:18,012 | INFO     | -- intersect: 296406993150.1474
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | intersect: 296406993150.1474
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | chi2: 0.10585317084623401
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | -- intersect: 296406993150.1474
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | current memory leak: -168.38 B/s (using 58 data points, chi2=0.11)
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | could have reported an average CPU frequency of 3962 MHz (6 samples)
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | ..............................
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | . Timing measurements:
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | . get job = 0 s
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | . initial setup = 2 s
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | . payload setup = 2 s
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | . stage-in = 0 s
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | . payload execution = 3934 s
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | . stage-out = 0 s
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | . log creation = 0 s
[2025-10-13 08:47:49] 2025-10-13 05:47:18,013 | INFO     | ..............................
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | 
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | job summary report
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | --------------------------------------------------
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | PanDA job id: 6838199260
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | task id: 46676269
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | errors: (none)
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | pilot state: finished 
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | transexitcode: 0
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | exeerrorcode: 0
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | exeerrordiag: 
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | exitcode: 0
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | exitmsg: OK
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | cpuconsumptiontime: 14553 s
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | nevents: 400
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | neventsw: 0
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | pid: 3565770
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | pgrp: 3565770
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | corecount: 4
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | event service: False
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | sizes: {0: 2348805, 2: 2349067, 10: 2349095, 3940: 2375085, 3941: 2384138, 3943: 2384138, 3945: 2384460}
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | --------------------------------------------------
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | 
[2025-10-13 08:47:49] 2025-10-13 05:47:18,264 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,273 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,274 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,274 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,274 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,274 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,274 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,274 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:47:49] 2025-10-13 05:47:18,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,274 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:47:49] 2025-10-13 05:47:18,274 | INFO     | job 6838199260 has completed (purged errors)
[2025-10-13 08:47:49] 2025-10-13 05:47:18,274 | INFO     | overall cleanup function is called
[2025-10-13 08:47:49] 2025-10-13 05:47:19,280 | INFO     | --- collectZombieJob: --- 10, [3565770]
[2025-10-13 08:47:49] 2025-10-13 05:47:19,281 | INFO     | zombie collector waiting for pid 3565770
[2025-10-13 08:47:49] 2025-10-13 05:47:19,281 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:47:49] 2025-10-13 05:47:19,281 | INFO     | collected zombie processes
[2025-10-13 08:47:49] 2025-10-13 05:47:19,281 | INFO     | will attempt to kill all subprocesses of pid=3565770
[2025-10-13 08:47:49] 2025-10-13 05:47:19,384 | INFO     | process IDs to be killed: [3565770] (in reverse order)
[2025-10-13 08:47:49] 2025-10-13 05:47:19,418 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:47:49] 2025-10-13 05:47:19,419 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:47:49] 2025-10-13 05:47:19,422 | INFO     | did not find any defunct processes belonging to 3565770
[2025-10-13 08:47:49] 2025-10-13 05:47:19,424 | INFO     | did not find any defunct processes belonging to 3565770
[2025-10-13 08:47:49] 2025-10-13 05:47:19,424 | INFO     | ready for new job
[2025-10-13 08:47:49] 2025-10-13 05:47:19,424 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:47:49] 2025-10-13 05:47:19,425 | INFO     | ***************************************
[2025-10-13 08:47:49] 2025-10-13 05:47:19,425 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:47:49] 2025-10-13 05:47:19,425 | INFO     | ***************************************
[2025-10-13 08:47:49] 2025-10-13 05:47:19,425 | INFO     | 
[2025-10-13 08:47:49] 2025-10-13 05:47:19,425 | INFO     | architecture information:
[2025-10-13 08:47:49] 2025-10-13 05:47:19,425 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:47:49] 2025-10-13 05:47:19,431 | INFO     | cat /etc/os-release:
[2025-10-13 08:47:49] NAME="CentOS Linux"
[2025-10-13 08:47:49] VERSION="7 (Core)"
[2025-10-13 08:47:49] ID="centos"
[2025-10-13 08:47:49] ID_LIKE="rhel fedora"
[2025-10-13 08:47:49] VERSION_ID="7"
[2025-10-13 08:47:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:47:49] ANSI_COLOR="0;31"
[2025-10-13 08:47:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:47:49] HOME_URL="https://www.centos.org/"
[2025-10-13 08:47:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:47:49] 
[2025-10-13 08:47:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:47:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:47:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:47:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:47:49] 
[2025-10-13 08:47:49] 2025-10-13 05:47:19,432 | INFO     | ***************************************
[2025-10-13 08:47:49] 2025-10-13 05:47:19,934 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2025-10-13 08:47:49] 2025-10-13 05:47:19,942 | INFO     | sufficient remaining disk space (131139108864 B)
[2025-10-13 08:47:49] 2025-10-13 05:47:19,942 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:47:49] 2025-10-13 05:47:19,942 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:47:49] 2025-10-13 05:47:19,942 | INFO     | update_server=False
[2025-10-13 08:47:49] 2025-10-13 05:47:19,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:47:49] 2025-10-13 05:47:19,942 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:47:49] 2025-10-13 05:47:19,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:47:49] 2025-10-13 05:47:20,276 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:47:49] 2025-10-13 05:47:20,276 | INFO     | aborting loop
[2025-10-13 08:47:49] 2025-10-13 05:47:20,602 | INFO     | all job control threads have been joined
[2025-10-13 08:47:49] 2025-10-13 05:47:20,644 | INFO     | all payload control threads have been joined
[2025-10-13 08:47:49] 2025-10-13 05:47:20,690 | INFO     | all data control threads have been joined
[2025-10-13 08:47:49] 2025-10-13 05:47:20,948 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:20,948 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:20,987 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:21,163 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:21,281 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:21,459 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:21,607 | INFO     | [job] control thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:21,649 | INFO     | [payload] control thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:21,695 | INFO     | [data] control thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:21,948 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:22,098 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:22,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:47:49] 2025-10-13 05:47:22,235 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:22,322 | INFO     | [job] validate thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:22,406 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:26,178 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:26,567 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:47:49] 2025-10-13 05:47:30,478 | INFO     | job.realtimelogging is not enabled
[2025-10-13 08:47:49] 2025-10-13 05:47:31,478 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:47:49] 2025-10-13 05:47:31,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139802577721152)>', '<ExcThread(monitor, started 139802091435776)>']
[2025-10-13 08:47:49] 2025-10-13 05:47:36,517 | INFO     | all workflow threads have been joined
[2025-10-13 08:47:49] 2025-10-13 05:47:36,517 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:47:49] 2025-10-13 05:47:36,517 | INFO     | traces error code: 0
[2025-10-13 08:47:49] 2025-10-13 05:47:36,517 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:47:49] 2025-10-13 05:47:49,605 | INFO     | PID=3559114 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 08:47:49] 2025-10-13 05:47:49,605 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:47:49] 2025-10-13 05:47:49,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:47:49] 2025-10-13 05:47:49,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:47:49] 2025-10-13 05:47:49,605 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:47:49] 2025-10-13 05:47:49,605 | INFO     | [monitor] control thread has ended
[2025-10-13 08:47:49] 2025-10-13 05:47:49,672 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:47:49] 2025-10-13 05:47:49,674 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:47:49] 2025-10-13 05:47:49,675 [wrapper] pilotpid: 3559114
[2025-10-13 08:47:49] 2025-10-13 05:47:49,677 [wrapper] Pilot exit status: 0
[2025-10-13 08:47:49] 2025-10-13 05:47:49,683 [wrapper] pandaids: 6838199260
[2025-10-13 08:47:49] 2025-10-13 05:47:49,707 [wrapper] cleanup supervisor_pilot 3613363 3559115
[2025-10-13 08:47:49] 2025-10-13 05:47:49,709 [wrapper] Test setup, not cleaning
[2025-10-13 08:47:49] 2025-10-13 05:47:49,711 [wrapper] apfmon messages muted
[2025-10-13 08:47:49] 2025-10-13 05:47:49,712 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:47:49] 2025-10-13 05:47:49,714 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:47:49]  *** Error codes and diagnostics ***
[2025-10-13 08:47:49]     "exeErrorCode": 0,
[2025-10-13 08:47:49]     "exeErrorDiag": "",
[2025-10-13 08:47:49]     "pilotErrorCode": 0,
[2025-10-13 08:47:49]     "pilotErrorDiag": "",
[2025-10-13 08:47:49]  *** Listing of results directory ***
[2025-10-13 08:47:49] total 412116
[2025-10-13 08:47:49] -rw-r--r-- 1 ek ek    557409 Oct 11 09:35 pilot3.tar.gz
[2025-10-13 08:47:49] -rw-r--r-- 1 ek ek      5112 Oct 11 10:01 queuedata.json
[2025-10-13 08:47:49] -rwx------ 1 ek ek     36292 Oct 11 10:01 runpilot2-wrapper.sh
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek       100 Oct 13 07:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:47:49] -rwxr-xr-x 1 ek ek      7986 Oct 13 07:41 run_atlas
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek       105 Oct 13 07:41 job.xml
[2025-10-13 08:47:49] -rw-r--r-- 2 ek ek 222394011 Oct 13 07:41 EVNT.46676267._000620.pool.root.1
[2025-10-13 08:47:49] drwxrwx--x 2 ek ek      4096 Oct 13 07:41 shared
[2025-10-13 08:47:49] -rw-r--r-- 2 ek ek    569685 Oct 13 07:41 input.tar.gz
[2025-10-13 08:47:49] -rw-r--r-- 2 ek ek     15120 Oct 13 07:41 start_atlas.sh
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek         0 Oct 13 07:41 boinc_setup_complete
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek      9843 Oct 13 07:41 init_data.xml
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek         0 Oct 13 07:41 boinc_lockfile
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek      2549 Oct 13 07:41 pandaJob.out
[2025-10-13 08:47:49] -rw------- 1 ek ek    974365 Oct 13 07:41 agis_schedconf.cvmfs.json
[2025-10-13 08:47:49] -rw------- 1 ek ek   1560580 Oct 13 07:41 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:47:49] drwx------ 5 ek ek      4096 Oct 13 07:41 pilot3
[2025-10-13 08:47:49] -rw------- 1 ek ek 194027501 Oct 13 08:46 HITS.46676269._053340.pool.root.1
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek       529 Oct 13 08:47 boinc_task_state.xml
[2025-10-13 08:47:49] -rw------- 1 ek ek      1036 Oct 13 08:47 memory_monitor_summary.json
[2025-10-13 08:47:49] -rw------- 1 ek ek    253687 Oct 13 08:47 log.46676269._053340.job.log.tgz.1
[2025-10-13 08:47:49] -rw------- 1 ek ek      7791 Oct 13 08:47 heartbeat.json
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek      8192 Oct 13 08:47 boinc_mmap_file
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek        27 Oct 13 08:47 wrapper_checkpoint.txt
[2025-10-13 08:47:49] -rw------- 1 ek ek       747 Oct 13 08:47 pilotlog.txt
[2025-10-13 08:47:49] -rw------- 1 ek ek        95 Oct 13 08:47 pilot_heartbeat.json
[2025-10-13 08:47:49] -rw------- 1 ek ek    590628 Oct 13 08:47 log.46676269._053340.job.log.1
[2025-10-13 08:47:49] -rw------- 1 ek ek       357 Oct 13 08:47 output.list
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek       620 Oct 13 08:47 runtime_log
[2025-10-13 08:47:49] -rw------- 1 ek ek    860160 Oct 13 08:47 result.tar.gz
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek      8898 Oct 13 08:47 runtime_log.err
[2025-10-13 08:47:49] -rw------- 1 ek ek       665 Oct 13 08:47 N1pKDmmmiR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmPRRMDmFfvs3n.diag
[2025-10-13 08:47:49] -rw-rw-r-- 1 ek ek     21478 Oct 13 08:47 stderr.txt
[2025-10-13 08:47:49] HITS file was successfully produced:
[2025-10-13 08:47:49] -rw------- 1 ek ek 194027501 Oct 13 08:46 shared/HITS.pool.root.1
[2025-10-13 08:47:49]  *** Contents of shared directory: ***
[2025-10-13 08:47:49] total 408088
[2025-10-13 08:47:49] -rw-r--r-- 2 ek ek 222394011 Oct 13 07:41 ATLAS.root_0
[2025-10-13 08:47:49] -rw-r--r-- 2 ek ek    569685 Oct 13 07:41 input.tar.gz
[2025-10-13 08:47:49] -rw-r--r-- 2 ek ek     15120 Oct 13 07:41 start_atlas.sh
[2025-10-13 08:47:49] -rw------- 1 ek ek 194027501 Oct 13 08:46 HITS.pool.root.1
[2025-10-13 08:47:49] -rw------- 1 ek ek    860160 Oct 13 08:47 result.tar.gz
08:47:51 (3555304): run_atlas exited; CPU time 14584.190302
08:47:51 (3555304): called boinc_finish(0)

</stderr_txt>
]]>

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