Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:45:52 (3995509): wrapper (7.7.26015): starting
19:45:52 (3995509): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 19:45:52] Arguments: --nthreads 8
[2025-10-11 19:45:52] Threads: 8
[2025-10-11 19:45:52] Checking for CVMFS
[2025-10-11 19:45:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 19:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 19:46:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 19:46:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 19:46:15] 2.13.2.0 116703 137348 311324 151600 1 429 32744164 32935936 29866 16776704 0 90669653 99.670 84338731 30465 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 19:46:15] CVMFS is ok
[2025-10-11 19:46:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 19:46:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 19:46:15] Further information can be found at the LHC@home message board.
[2025-10-11 19:46:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 19:46:15] Checking for apptainer binary...
[2025-10-11 19:46:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 19:46:15] Running /usr/bin/apptainer --version
[2025-10-11 19:46:15] apptainer version 1.4.3-1.el9
[2025-10-11 19:46:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 19:46:16] c-5-3.aglt2.org
[2025-10-11 19:46:16] apptainer works
[2025-10-11 19:46:16] Set ATHENA_PROC_NUMBER=8
[2025-10-11 19:46:16] Set ATHENA_CORE_NUMBER=8
[2025-10-11 19:46:16] Starting ATLAS job with PandaID=6838451438
[2025-10-11 19:46:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:27:14 (6011): wrapper (7.7.26015): starting
20:27:14 (6011): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 20:27:14] Arguments: --nthreads 8
[2025-10-11 20:27:14] Threads: 8
[2025-10-11 20:27:14] This job has been restarted, cleaning up previous attempt
[2025-10-11 20:27:14] Checking for CVMFS
[2025-10-11 20:27:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 20:27:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 20:27:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 20:27:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 20:27:15] 2.13.2.0 116703 137389 312516 151601 0 457 17339059 32935937 29689 16776704 0 90953998 99.670 84740629 30461 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 20:27:15] CVMFS is ok
[2025-10-11 20:27:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 20:27:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 20:27:15] Further information can be found at the LHC@home message board.
[2025-10-11 20:27:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 20:27:15] Checking for apptainer binary...
[2025-10-11 20:27:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 20:27:15] Running /usr/bin/apptainer --version
[2025-10-11 20:27:15] apptainer version 1.4.3-1.el9
[2025-10-11 20:27:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 20:27:15] c-5-3.aglt2.org
[2025-10-11 20:27:15] apptainer works
[2025-10-11 20:27:15] Set ATHENA_PROC_NUMBER=8
[2025-10-11 20:27:15] Set ATHENA_CORE_NUMBER=8
[2025-10-11 20:27:15] Starting ATLAS job with PandaID=6838451438
[2025-10-11 20:27:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:28:27]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:28:27] 2025-10-12 11:27:47,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:28:27] 2025-10-12 11:27:48,268 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 07:28:27] 2025-10-12 11:27:48,413 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.956000000001
[2025-10-12 07:28:27] 2025-10-12 11:27:48,431 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838451438/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:28:27] 2025-10-12 11:27:48,432 | INFO     | extracted standard info from prmon json
[2025-10-12 07:28:27] 2025-10-12 11:27:48,432 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 07:28:27] 2025-10-12 11:27:48,436 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:28:27] 2025-10-12 11:27:48,437 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:28:27] 2025-10-12 11:27:48,437 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:28:27] 2025-10-12 11:27:48,460 | INFO     | fitting pss+swap vs Time
[2025-10-12 07:28:27] 2025-10-12 11:27:48,461 | INFO     | sum of square deviations: 83985303398.27803
[2025-10-12 07:28:27] 2025-10-12 11:27:48,482 | INFO     | sum of deviations: -62864299423.28124
[2025-10-12 07:28:27] 2025-10-12 11:27:48,482 | INFO     | mean x: 1760248672.4080372
[2025-10-12 07:28:27] 2025-10-12 11:27:48,483 | INFO     | mean y: 2088114.0540958268
[2025-10-12 07:28:27] 2025-10-12 11:27:48,483 | INFO     | -- intersect: 1319661488.4923782
[2025-10-12 07:28:27] 2025-10-12 11:27:48,483 | INFO     | intersect: 1319661488.4923782
[2025-10-12 07:28:27] 2025-10-12 11:27:48,484 | INFO     | chi2: 3.5825832116482648
[2025-10-12 07:28:27] 2025-10-12 11:27:48,485 | INFO     | sum of square deviations: 82053338995.93922
[2025-10-12 07:28:27] 2025-10-12 11:27:48,504 | INFO     | sum of deviations: -29085301681.378464
[2025-10-12 07:28:27] 2025-10-12 11:27:48,505 | INFO     | mean x: 1760248519.911215
[2025-10-12 07:28:27] 2025-10-12 11:27:48,505 | INFO     | mean y: 2090764.6775700934
[2025-10-12 07:28:27] 2025-10-12 11:27:48,505 | INFO     | -- intersect: 626042938.4989346
[2025-10-12 07:28:27] 2025-10-12 11:27:48,505 | INFO     | intersect: 626042938.4989346
[2025-10-12 07:28:27] 2025-10-12 11:27:48,506 | INFO     | chi2: 2.9291512143587206
[2025-10-12 07:28:27] 2025-10-12 11:27:48,506 | INFO     | current chi2=2.9291512143587206 (change=18.239129663897323 %)
[2025-10-12 07:28:27] 2025-10-12 11:27:48,506 | INFO     | right removable region: 641
[2025-10-12 07:28:27] 2025-10-12 11:27:48,507 | INFO     | sum of square deviations: 82052980005.78828
[2025-10-12 07:28:27] 2025-10-12 11:27:48,531 | INFO     | sum of deviations: -181104992104.9471
[2025-10-12 07:28:27] 2025-10-12 11:27:48,531 | INFO     | mean x: 1760248824.919003
[2025-10-12 07:28:27] 2025-10-12 11:27:48,531 | INFO     | mean y: 2097429.020249221
[2025-10-12 07:28:27] 2025-10-12 11:27:48,532 | INFO     | -- intersect: 3887268321.2560954
[2025-10-12 07:28:27] 2025-10-12 11:27:48,532 | INFO     | intersect: 3887268321.2560954
[2025-10-12 07:28:27] 2025-10-12 11:27:48,533 | INFO     | chi2: 1.5451992699632549
[2025-10-12 07:28:27] 2025-10-12 11:27:48,533 | INFO     | current chi2=1.5451992699632549 (change=56.86913105216212 %)
[2025-10-12 07:28:27] 2025-10-12 11:27:48,534 | INFO     | sum of square deviations: 80150517638.1414
[2025-10-12 07:28:27] 2025-10-12 11:27:48,555 | INFO     | sum of deviations: -203316801894.98282
[2025-10-12 07:28:27] 2025-10-12 11:27:48,555 | INFO     | mean x: 1760248977.4301412
[2025-10-12 07:28:27] 2025-10-12 11:27:48,556 | INFO     | mean y: 2099202.6970172683
[2025-10-12 07:28:27] 2025-10-12 11:27:48,556 | INFO     | -- intersect: 4467300466.221996
[2025-10-12 07:28:27] 2025-10-12 11:27:48,556 | INFO     | intersect: 4467300466.221996
[2025-10-12 07:28:27] 2025-10-12 11:27:48,557 | INFO     | chi2: 1.4157080832919005
[2025-10-12 07:28:27] 2025-10-12 11:27:48,557 | INFO     | current chi2=1.4157080832919005 (change=8.380225721594712 %)
[2025-10-12 07:28:27] 2025-10-12 11:27:48,557 | INFO     | left removable region: 20
[2025-10-12 07:28:27] 2025-10-12 11:27:48,562 | INFO     | sum of square deviations: 74261339959.54906
[2025-10-12 07:28:27] 2025-10-12 11:27:48,595 | INFO     | sum of deviations: -146581696540.8583
[2025-10-12 07:28:27] 2025-10-12 11:27:48,596 | INFO     | mean x: 1760249099.447665
[2025-10-12 07:28:27] 2025-10-12 11:27:48,596 | INFO     | mean y: 2100230.3735909825
[2025-10-12 07:28:27] 2025-10-12 11:27:48,596 | INFO     | -- intersect: 3476590449.269495
[2025-10-12 07:28:27] 2025-10-12 11:27:48,596 | INFO     | intersect: 3476590449.269495
[2025-10-12 07:28:27] 2025-10-12 11:27:48,597 | INFO     | chi2: 0.7305127445390704
[2025-10-12 07:28:27] 2025-10-12 11:27:48,597 | INFO     | -- intersect: 3476590449.269495
[2025-10-12 07:28:27] 2025-10-12 11:27:48,597 | INFO     | current memory leak: -1.97 B/s (using 621 data points, chi2=0.73)
[2025-10-12 07:28:27] 2025-10-12 11:27:48,619 | INFO     | could have reported an average CPU frequency of 2599 MHz (25 samples)
[2025-10-12 07:28:27] 2025-10-12 11:27:48,619 | INFO     | ..............................
[2025-10-12 07:28:27] 2025-10-12 11:27:48,619 | INFO     | . Timing measurements:
[2025-10-12 07:28:27] 2025-10-12 11:27:48,619 | INFO     | . get job = 0 s
[2025-10-12 07:28:27] 2025-10-12 11:27:48,619 | INFO     | . initial setup = 3 s
[2025-10-12 07:28:27] 2025-10-12 11:27:48,619 | INFO     | . payload setup = 23 s
[2025-10-12 07:28:27] 2025-10-12 11:27:48,619 | INFO     | . stage-in = 0 s
[2025-10-12 07:28:27] 2025-10-12 11:27:48,620 | INFO     | . payload execution = 39461 s
[2025-10-12 07:28:27] 2025-10-12 11:27:48,620 | INFO     | . stage-out = 11 s
[2025-10-12 07:28:27] 2025-10-12 11:27:48,620 | INFO     | . log creation = 1 s
[2025-10-12 07:28:27] 2025-10-12 11:27:48,620 | INFO     | ..............................
[2025-10-12 07:28:27] 2025-10-12 11:27:49,296 | INFO     | 
[2025-10-12 07:28:27] 2025-10-12 11:27:49,296 | INFO     | job summary report
[2025-10-12 07:28:27] 2025-10-12 11:27:49,296 | INFO     | --------------------------------------------------
[2025-10-12 07:28:27] 2025-10-12 11:27:49,297 | INFO     | PanDA job id: 6838451438
[2025-10-12 07:28:27] 2025-10-12 11:27:49,297 | INFO     | task id: 46676269
[2025-10-12 07:28:27] 2025-10-12 11:27:49,297 | INFO     | errors: (none)
[2025-10-12 07:28:27] 2025-10-12 11:27:49,297 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:28:27] 2025-10-12 11:27:49,297 | INFO     | pilot state: finished 
[2025-10-12 07:28:27] 2025-10-12 11:27:49,297 | INFO     | transexitcode: 0
[2025-10-12 07:28:27] 2025-10-12 11:27:49,297 | INFO     | exeerrorcode: 0
[2025-10-12 07:28:27] 2025-10-12 11:27:49,297 | INFO     | exeerrordiag: 
[2025-10-12 07:28:27] 2025-10-12 11:27:49,297 | INFO     | exitcode: 0
[2025-10-12 07:28:27] 2025-10-12 11:27:49,297 | INFO     | exitmsg: OK
[2025-10-12 07:28:27] 2025-10-12 11:27:49,298 | INFO     | cpuconsumptiontime: 48374 s
[2025-10-12 07:28:27] 2025-10-12 11:27:49,298 | INFO     | nevents: 400
[2025-10-12 07:28:27] 2025-10-12 11:27:49,298 | INFO     | neventsw: 0
[2025-10-12 07:28:27] 2025-10-12 11:27:49,298 | INFO     | pid: 27699
[2025-10-12 07:28:27] 2025-10-12 11:27:49,298 | INFO     | pgrp: 27699
[2025-10-12 07:28:27] 2025-10-12 11:27:49,298 | INFO     | corecount: 8
[2025-10-12 07:28:27] 2025-10-12 11:27:49,298 | INFO     | event service: False
[2025-10-12 07:28:27] 2025-10-12 11:27:49,298 | INFO     | sizes: {0: 2348628, 1: 2348883, 12: 2348883, 17: 2349173, 23: 2349201, 39490: 2390207, 39503: 2399205, 39506: 2399261, 39554: 2399519}
[2025-10-12 07:28:27] 2025-10-12 11:27:49,298 | INFO     | --------------------------------------------------
[2025-10-12 07:28:27] 2025-10-12 11:27:49,298 | INFO     | 
[2025-10-12 07:28:27] 2025-10-12 11:27:49,299 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 07:28:27] 2025-10-12 11:27:49,695 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,695 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,695 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,695 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,695 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,695 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,696 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,696 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,696 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,696 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,696 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,696 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,696 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,696 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,696 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,696 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,697 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,697 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:28:27] 2025-10-12 11:27:49,697 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,697 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:28:27] 2025-10-12 11:27:49,697 | INFO     | job 6838451438 has completed (purged errors)
[2025-10-12 07:28:27] 2025-10-12 11:27:49,697 | INFO     | overall cleanup function is called
[2025-10-12 07:28:27] 2025-10-12 11:27:50,726 | INFO     | --- collectZombieJob: --- 10, [27699]
[2025-10-12 07:28:27] 2025-10-12 11:27:50,726 | INFO     | zombie collector waiting for pid 27699
[2025-10-12 07:28:27] 2025-10-12 11:27:50,726 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:28:27] 2025-10-12 11:27:50,726 | INFO     | collected zombie processes
[2025-10-12 07:28:27] 2025-10-12 11:27:50,727 | INFO     | will attempt to kill all subprocesses of pid=27699
[2025-10-12 07:28:27] 2025-10-12 11:27:51,745 | INFO     | process IDs to be killed: [27699] (in reverse order)
[2025-10-12 07:28:27] 2025-10-12 11:27:52,181 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:28:27] 2025-10-12 11:27:52,182 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:28:27] 2025-10-12 11:27:52,514 | INFO     | did not find any defunct processes belonging to 27699
[2025-10-12 07:28:27] 2025-10-12 11:27:52,921 | INFO     | did not find any defunct processes belonging to 27699
[2025-10-12 07:28:27] 2025-10-12 11:27:52,922 | INFO     | ready for new job
[2025-10-12 07:28:27] 2025-10-12 11:27:52,922 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:28:27] 2025-10-12 11:27:52,978 | INFO     | ***************************************
[2025-10-12 07:28:27] 2025-10-12 11:27:52,978 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:28:27] 2025-10-12 11:27:52,979 | INFO     | ***************************************
[2025-10-12 07:28:27] 2025-10-12 11:27:52,979 | INFO     | 
[2025-10-12 07:28:27] 2025-10-12 11:27:52,981 | INFO     | architecture information:
[2025-10-12 07:28:27] 2025-10-12 11:27:53,099 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:28:27] 2025-10-12 11:27:53,418 | INFO     | cat /etc/os-release:
[2025-10-12 07:28:27] NAME="CentOS Linux"
[2025-10-12 07:28:27] VERSION="7 (Core)"
[2025-10-12 07:28:27] ID="centos"
[2025-10-12 07:28:27] ID_LIKE="rhel fedora"
[2025-10-12 07:28:27] VERSION_ID="7"
[2025-10-12 07:28:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:28:27] ANSI_COLOR="0;31"
[2025-10-12 07:28:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:28:27] HOME_URL="https://www.centos.org/"
[2025-10-12 07:28:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:28:27] 
[2025-10-12 07:28:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:28:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:28:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:28:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:28:27] 
[2025-10-12 07:28:27] 2025-10-12 11:27:53,419 | INFO     | ***************************************
[2025-10-12 07:28:27] 2025-10-12 11:27:53,922 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 07:28:27] 2025-10-12 11:27:54,074 | INFO     | sufficient remaining disk space (74584162304 B)
[2025-10-12 07:28:27] 2025-10-12 11:27:54,075 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:28:27] 2025-10-12 11:27:54,075 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:28:27] 2025-10-12 11:27:54,075 | INFO     | update_server=False
[2025-10-12 07:28:27] 2025-10-12 11:27:54,075 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:28:27] 2025-10-12 11:27:54,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:28:27] 2025-10-12 11:27:54,076 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:28:27] 2025-10-12 11:27:54,076 | INFO     | aborting loop
[2025-10-12 07:28:27] 2025-10-12 11:27:54,223 | INFO     | all payload control threads have been joined
[2025-10-12 07:28:27] 2025-10-12 11:27:54,223 | INFO     | all job control threads have been joined
[2025-10-12 07:28:27] 2025-10-12 11:27:54,531 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:28:27] 2025-10-12 11:27:55,084 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,085 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,194 | INFO     | all data control threads have been joined
[2025-10-12 07:28:27] 2025-10-12 11:27:55,229 | INFO     | [payload] control thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,251 | INFO     | [job] control thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:28:27] 2025-10-12 11:27:55,363 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,369 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,376 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,392 | INFO     | [job] validate thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,393 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,441 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,442 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,537 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:55,594 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:56,206 | INFO     | [data] control thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:57,319 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:27:58,111 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:28:27] 2025-10-12 11:28:00,255 [wrapper] supervise_pilot (15 min periods counter: 45)
[2025-10-12 07:28:27] 2025-10-12 11:28:15,578 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:28:27] 2025-10-12 11:28:16,773 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140355967100736)>', '<ExcThread(monitor, started 140355588560640)>']
[2025-10-12 07:28:27] 2025-10-12 11:28:21,874 | INFO     | all workflow threads have been joined
[2025-10-12 07:28:27] 2025-10-12 11:28:21,874 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:28:27] 2025-10-12 11:28:21,874 | INFO     | traces error code: 0
[2025-10-12 07:28:27] 2025-10-12 11:28:21,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:28:27] 2025-10-12 11:28:25,090 | INFO     | PID=14093 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 07:28:27] 2025-10-12 11:28:25,090 | INFO     | .. there are 42 such processes running
[2025-10-12 07:28:27] 2025-10-12 11:28:25,092 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:28:27] 2025-10-12 11:28:25,093 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:28:27] 2025-10-12 11:28:25,093 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:28:27] 2025-10-12 11:28:25,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:28:27] 2025-10-12 11:28:25,093 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 07:28:27] 2025-10-12 11:28:25,093 | INFO     | [monitor] control thread has ended
[2025-10-12 07:28:27] 2025-10-12 11:28:25,341 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:28:27] 2025-10-12 11:28:25,360 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:28:27] 2025-10-12 11:28:25,363 [wrapper] pilotpid: 14093
[2025-10-12 07:28:27] 2025-10-12 11:28:25,367 [wrapper] Pilot exit status: 0
[2025-10-12 07:28:27] 2025-10-12 11:28:25,827 [wrapper] pandaids: 6838451438 6838451438
[2025-10-12 07:28:27] 2025-10-12 11:28:26,104 [wrapper] cleanup supervisor_pilot 2232715 14094
[2025-10-12 07:28:27] 2025-10-12 11:28:26,108 [wrapper] Test setup, not cleaning
[2025-10-12 07:28:27] 2025-10-12 11:28:26,111 [wrapper] apfmon messages muted
[2025-10-12 07:28:27] 2025-10-12 11:28:26,114 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:28:27] 2025-10-12 11:28:26,117 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:28:27]  *** Error codes and diagnostics ***
[2025-10-12 07:28:27]     "exeErrorCode": 0,
[2025-10-12 07:28:27]     "exeErrorDiag": "",
[2025-10-12 07:28:27]     "pilotErrorCode": 0,
[2025-10-12 07:28:27]     "pilotErrorDiag": "",
[2025-10-12 07:28:27]  *** Listing of results directory ***
[2025-10-12 07:28:27] total 625636
[2025-10-12 07:28:27] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 08:51 pilot3.tar.gz
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 08:58 queuedata.json
[2025-10-12 07:28:27] -rwx------. 1 boincer umatlas     36292 Oct 11 08:59 runpilot2-wrapper.sh
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas       100 Oct 11 19:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:28:27] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 19:45 run_atlas
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas       105 Oct 11 19:45 job.xml
[2025-10-12 07:28:27] -rw-r--r--. 3 boincer umatlas 219214881 Oct 11 19:45 EVNT.46676267._002331.pool.root.1
[2025-10-12 07:28:27] -rw-r--r--. 3 boincer umatlas 219214881 Oct 11 19:45 ATLAS.root_0
[2025-10-12 07:28:27] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 19:45 shared
[2025-10-12 07:28:27] -rw-r--r--. 2 boincer umatlas    569676 Oct 11 19:45 input.tar.gz
[2025-10-12 07:28:27] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 19:45 start_atlas.sh
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas         0 Oct 11 19:45 boinc_lockfile
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas      2549 Oct 11 20:27 pandaJob.out
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas    975496 Oct 11 20:27 agis_schedconf.cvmfs.json
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas      6704 Oct 12 07:21 init_data.xml
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas 188337099 Oct 12 07:25 HITS.46676269._058118.pool.root.1
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas       531 Oct 12 07:25 boinc_task_state.xml
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas      1051 Oct 12 07:26 memory_monitor_summary.json
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas   1560580 Oct 12 07:26 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas    721397 Oct 12 07:26 log.46676269._058118.job.log.tgz.1
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas        96 Oct 12 07:27 pilot_heartbeat.json
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas      7836 Oct 12 07:27 heartbeat.json
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas       891 Oct 12 07:28 pilotlog.txt
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas   4270227 Oct 12 07:28 log.46676269._058118.job.log.1
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas       357 Oct 12 07:28 output.list
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas       620 Oct 12 07:28 runtime_log
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas   5007360 Oct 12 07:28 result.tar.gz
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas      8774 Oct 12 07:28 runtime_log.err
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas       783 Oct 12 07:28 FMzLDmrMoR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6UgNDmwR3XUm.diag
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas        28 Oct 12 07:28 wrapper_checkpoint.txt
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 07:28 boinc_mmap_file
[2025-10-12 07:28:27] -rw-r--r--. 1 boincer umatlas     23308 Oct 12 07:28 stderr.txt
[2025-10-12 07:28:27] HITS file was successfully produced:
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas 188337099 Oct 12 07:25 shared/HITS.pool.root.1
[2025-10-12 07:28:27]  *** Contents of shared directory: ***
[2025-10-12 07:28:27] total 403476
[2025-10-12 07:28:27] -rw-r--r--. 3 boincer umatlas 219214881 Oct 11 19:45 ATLAS.root_0
[2025-10-12 07:28:27] -rw-r--r--. 2 boincer umatlas    569676 Oct 11 19:45 input.tar.gz
[2025-10-12 07:28:27] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 19:45 start_atlas.sh
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas 188337099 Oct 12 07:25 HITS.pool.root.1
[2025-10-12 07:28:27] -rw-------. 1 boincer umatlas   5007360 Oct 12 07:28 result.tar.gz
07:28:29 (6011): run_atlas exited; CPU time 49913.774853
07:28:29 (6011): called boinc_finish(0)

</stderr_txt>
]]>

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