Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:24:34 (1788873): wrapper (7.7.26015): starting
14:24:34 (1788873): wrapper: running run_atlas (--nthreads 9)
[2025-10-11 14:24:34] Arguments: --nthreads 9
[2025-10-11 14:24:34] Threads: 9
[2025-10-11 14:24:34] Checking for CVMFS
[2025-10-11 14:24:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 14:24:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 14:24:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 14:24:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 14:24:34] 2.13.2.0 3269412 34643 382356 151593 1 724 21350635 40960001 40821 16776704 0 440193807 99.841 182381673 36840 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 14:24:34] CVMFS is ok
[2025-10-11 14:24:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 14:24:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 14:24:34] Further information can be found at the LHC@home message board.
[2025-10-11 14:24:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 14:24:34] Checking for apptainer binary...
[2025-10-11 14:24:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 14:24:34] Running /usr/bin/apptainer --version
[2025-10-11 14:24:34] apptainer version 1.4.3-1.el9
[2025-10-11 14:24:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 14:24:34] c8-16-2.aglt2.org
[2025-10-11 14:24:34] apptainer works
[2025-10-11 14:24:34] Set ATHENA_PROC_NUMBER=9
[2025-10-11 14:24:34] Set ATHENA_CORE_NUMBER=9
[2025-10-11 14:24:34] Starting ATLAS job with PandaID=6838118501
[2025-10-11 14:24:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 15:20:18]  *** The last 200 lines of the pilot log: ***
[2025-10-11 15:20:18] 2025-10-11 19:19:28,665 | INFO     | job 6838118501 has state=finished
[2025-10-11 15:20:18] 2025-10-11 19:19:28,665 | INFO     | preparing for final server update for job 6838118501 in state='finished'
[2025-10-11 15:20:18] 2025-10-11 19:19:28,665 | INFO     | this job has now completed (state=finished)
[2025-10-11 15:20:18] 2025-10-11 19:19:28,665 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 15:20:18] 2025-10-11 19:19:28,666 | INFO     | log transfer has been attempted: DONE
[2025-10-11 15:20:18] 2025-10-11 19:19:28,666 | INFO     | job 6838118501 has finished - writing final server update
[2025-10-11 15:20:18] 2025-10-11 19:19:28,666 | INFO     | total number of processed events: 400 (read)
[2025-10-11 15:20:18] 2025-10-11 19:19:28,666 | INFO     | executing command: lscpu
[2025-10-11 15:20:18] 2025-10-11 19:19:28,768 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 15:20:18] 2025-10-11 19:19:28,910 | INFO     | time since job start (3281s) is within the limit (172800.0s)
[2025-10-11 15:20:18] 2025-10-11 19:19:29,002 | INFO     | monitor loop #202: job 0:6838118501 is in state 'finished'
[2025-10-11 15:20:18] 2025-10-11 19:19:29,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:20:18] 2025-10-11 19:19:30,919 | INFO     | time since job start (3283s) is within the limit (172800.0s)
[2025-10-11 15:20:18] 2025-10-11 19:19:31,509 | INFO     | monitor loop #203: job 0:6838118501 is in state 'finished'
[2025-10-11 15:20:18] 2025-10-11 19:19:31,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:20:18] 2025-10-11 19:19:32,926 | INFO     | time since job start (3285s) is within the limit (172800.0s)
[2025-10-11 15:20:18] 2025-10-11 19:19:34,016 | INFO     | monitor loop #204: job 0:6838118501 is in state 'finished'
[2025-10-11 15:20:18] 2025-10-11 19:19:34,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:20:18] 2025-10-11 19:19:34,942 | INFO     | time since job start (3287s) is within the limit (172800.0s)
[2025-10-11 15:20:18] 2025-10-11 19:19:36,521 | INFO     | monitor loop #205: job 0:6838118501 is in state 'finished'
[2025-10-11 15:20:18] 2025-10-11 19:19:36,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:20:18] 2025-10-11 19:19:36,948 | INFO     | time since job start (3289s) is within the limit (172800.0s)
[2025-10-11 15:20:18] 2025-10-11 19:19:39,014 | INFO     | PID=1796033 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 15:20:18] 2025-10-11 19:19:39,014 | INFO     | .. there are 66 such processes running
[2025-10-11 15:20:18] 2025-10-11 19:19:39,032 | INFO     | monitor loop #206: job 0:6838118501 is in state 'finished'
[2025-10-11 15:20:18] 2025-10-11 19:19:39,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:20:18] 2025-10-11 19:19:40,015 | INFO     | time since job start (3293s) is within the limit (172800.0s)
[2025-10-11 15:20:18] 2025-10-11 19:19:41,537 | INFO     | monitor loop #207: job 0:6838118501 is in state 'finished'
[2025-10-11 15:20:18] 2025-10-11 19:19:41,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:20:18] 2025-10-11 19:19:42,022 | INFO     | time since job start (3295s) is within the limit (172800.0s)
[2025-10-11 15:20:18] 2025-10-11 19:19:44,029 | INFO     | time since job start (3297s) is within the limit (172800.0s)
[2025-10-11 15:20:18] 2025-10-11 19:19:44,050 | INFO     | monitor loop #208: job 0:6838118501 is in state 'finished'
[2025-10-11 15:20:18] 2025-10-11 19:19:44,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:20:18] 2025-10-11 19:19:45,678 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 15:20:18] 2025-10-11 19:19:45,682 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9895546874973
[2025-10-11 15:20:18] 2025-10-11 19:19:45,699 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6838118501/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 15:20:18] 2025-10-11 19:19:45,700 | INFO     | extracted standard info from prmon json
[2025-10-11 15:20:18] 2025-10-11 19:19:45,700 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 15:20:18] 2025-10-11 19:19:45,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 15:20:18] 2025-10-11 19:19:45,701 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 15:20:18] 2025-10-11 19:19:45,701 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 15:20:18] 2025-10-11 19:19:45,701 | INFO     | fitting pss+swap vs Time
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | sum of square deviations: 32181160.978723403
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | sum of deviations: -374645300.34042555
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | mean x: 1760208828.0212767
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | mean y: 2289568.340425532
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | -- intersect: 20494215433.659523
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | intersect: 20494215433.659523
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | chi2: 0.006426391446048963
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | -- intersect: 20494215433.659523
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | current memory leak: -11.64 B/s (using 47 data points, chi2=0.01)
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | could have reported an average CPU frequency of 3791 MHz (5 samples)
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | ..............................
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | . Timing measurements:
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | . get job = 0 s
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | . initial setup = 2 s
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | . payload setup = 7 s
[2025-10-11 15:20:18] 2025-10-11 19:19:45,702 | INFO     | . stage-in = 0 s
[2025-10-11 15:20:18] 2025-10-11 19:19:45,703 | INFO     | . payload execution = 3250 s
[2025-10-11 15:20:18] 2025-10-11 19:19:45,703 | INFO     | . stage-out = 1 s
[2025-10-11 15:20:18] 2025-10-11 19:19:45,703 | INFO     | . log creation = 0 s
[2025-10-11 15:20:18] 2025-10-11 19:19:45,703 | INFO     | ..............................
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | 
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | job summary report
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | --------------------------------------------------
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | PanDA job id: 6838118501
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | task id: 46676269
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | errors: (none)
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | pilot state: finished 
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | transexitcode: 0
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | exeerrorcode: 0
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | exeerrordiag: 
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | exitcode: 0
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | exitmsg: OK
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | cpuconsumptiontime: 21513 s
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | nevents: 400
[2025-10-11 15:20:18] 2025-10-11 19:19:45,759 | INFO     | neventsw: 0
[2025-10-11 15:20:18] 2025-10-11 19:19:45,760 | INFO     | pid: 1809098
[2025-10-11 15:20:18] 2025-10-11 19:19:45,760 | INFO     | pgrp: 1809098
[2025-10-11 15:20:18] 2025-10-11 19:19:45,760 | INFO     | corecount: 9
[2025-10-11 15:20:18] 2025-10-11 19:19:45,760 | INFO     | event service: False
[2025-10-11 15:20:18] 2025-10-11 19:19:45,760 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 3261: 2374614, 3262: 2374613, 3263: 2383667, 3264: 2383851, 3281: 2384077}
[2025-10-11 15:20:18] 2025-10-11 19:19:45,760 | INFO     | --------------------------------------------------
[2025-10-11 15:20:18] 2025-10-11 19:19:45,760 | INFO     | 
[2025-10-11 15:20:18] 2025-10-11 19:19:45,760 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,794 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,794 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,794 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,794 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,794 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,794 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 15:20:18] 2025-10-11 19:19:45,794 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,794 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 15:20:18] 2025-10-11 19:19:45,794 | INFO     | job 6838118501 has completed (purged errors)
[2025-10-11 15:20:18] 2025-10-11 19:19:45,794 | INFO     | overall cleanup function is called
[2025-10-11 15:20:18] 2025-10-11 19:19:46,819 | INFO     | --- collectZombieJob: --- 10, [1809098]
[2025-10-11 15:20:18] 2025-10-11 19:19:46,819 | INFO     | zombie collector waiting for pid 1809098
[2025-10-11 15:20:18] 2025-10-11 19:19:46,819 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 15:20:18] 2025-10-11 19:19:46,819 | INFO     | collected zombie processes
[2025-10-11 15:20:18] 2025-10-11 19:19:46,819 | INFO     | will attempt to kill all subprocesses of pid=1809098
[2025-10-11 15:20:18] 2025-10-11 19:19:47,676 | INFO     | process IDs to be killed: [1809098] (in reverse order)
[2025-10-11 15:20:18] 2025-10-11 19:19:47,967 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 15:20:18] 2025-10-11 19:19:47,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 15:20:18] 2025-10-11 19:19:48,002 | INFO     | did not find any defunct processes belonging to 1809098
[2025-10-11 15:20:18] 2025-10-11 19:19:48,039 | INFO     | did not find any defunct processes belonging to 1809098
[2025-10-11 15:20:18] 2025-10-11 19:19:48,039 | INFO     | ready for new job
[2025-10-11 15:20:18] 2025-10-11 19:19:48,039 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 15:20:18] 2025-10-11 19:19:48,040 | INFO     | ***************************************
[2025-10-11 15:20:18] 2025-10-11 19:19:48,040 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 15:20:18] 2025-10-11 19:19:48,040 | INFO     | ***************************************
[2025-10-11 15:20:18] 2025-10-11 19:19:48,040 | INFO     | 
[2025-10-11 15:20:18] 2025-10-11 19:19:48,045 | INFO     | architecture information:
[2025-10-11 15:20:18] 2025-10-11 19:19:48,048 | INFO     | executing command: cat /etc/os-release
[2025-10-11 15:20:18] 2025-10-11 19:19:48,064 | INFO     | cat /etc/os-release:
[2025-10-11 15:20:18] NAME="CentOS Linux"
[2025-10-11 15:20:18] VERSION="7 (Core)"
[2025-10-11 15:20:18] ID="centos"
[2025-10-11 15:20:18] ID_LIKE="rhel fedora"
[2025-10-11 15:20:18] VERSION_ID="7"
[2025-10-11 15:20:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 15:20:18] ANSI_COLOR="0;31"
[2025-10-11 15:20:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 15:20:18] HOME_URL="https://www.centos.org/"
[2025-10-11 15:20:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 15:20:18] 
[2025-10-11 15:20:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 15:20:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 15:20:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 15:20:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 15:20:18] 
[2025-10-11 15:20:18] 2025-10-11 19:19:48,064 | INFO     | ***************************************
[2025-10-11 15:20:18] 2025-10-11 19:19:48,567 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-11 15:20:18] 2025-10-11 19:19:48,642 | INFO     | sufficient remaining disk space (166240190464 B)
[2025-10-11 15:20:18] 2025-10-11 19:19:48,643 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 15:20:18] 2025-10-11 19:19:48,646 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 15:20:18] 2025-10-11 19:19:48,646 | INFO     | update_server=False
[2025-10-11 15:20:18] 2025-10-11 19:19:48,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 15:20:18] 2025-10-11 19:19:48,646 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 15:20:18] 2025-10-11 19:19:48,647 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 15:20:18] 2025-10-11 19:19:48,987 | INFO     | all job control threads have been joined
[2025-10-11 15:20:18] 2025-10-11 19:19:49,063 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 15:20:18] 2025-10-11 19:19:49,063 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 15:20:18] 2025-10-11 19:19:49,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 15:20:18] 2025-10-11 19:19:49,063 | INFO     | will abort loop
[2025-10-11 15:20:18] 2025-10-11 19:19:49,448 | INFO     | all payload control threads have been joined
[2025-10-11 15:20:18] 2025-10-11 19:19:49,652 | INFO     | [job] retrieve thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:49,665 | INFO     | all data control threads have been joined
[2025-10-11 15:20:18] 2025-10-11 19:19:49,870 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:49,992 | INFO     | [job] control thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:50,069 | INFO     | [job] job monitor thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:50,191 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:50,212 | INFO     | [job] validate thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:50,372 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:50,453 | INFO     | [payload] control thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:50,477 | INFO     | [payload] validate_post thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:50,640 | INFO     | [payload] failed_post thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:50,653 | INFO     | [data] copytool_out thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:50,671 | INFO     | [data] control thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:50,777 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 15:20:18] 2025-10-11 19:19:51,003 | INFO     | [data] copytool_in thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:51,783 | INFO     | [job] queue monitor thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:52,544 | INFO     | [monitor] cgroup control has ended
[2025-10-11 15:20:18] 2025-10-11 19:19:52,654 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:19:59,553 | INFO     | job.realtimelogging is not enabled
[2025-10-11 15:20:18] 2025-10-11 19:20:00,560 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 15:20:18] 2025-10-11 19:20:01,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140163401869120)>', '<ExcThread(monitor, started 140162591860480)>']
[2025-10-11 15:20:18] 2025-10-11 19:20:06,907 | INFO     | all workflow threads have been joined
[2025-10-11 15:20:18] 2025-10-11 19:20:06,907 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 15:20:18] 2025-10-11 19:20:06,907 | INFO     | traces error code: 0
[2025-10-11 15:20:18] 2025-10-11 19:20:06,907 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 15:20:18] 2025-10-11 19:20:17,928 | INFO     | PID=1796033 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 15:20:18] 2025-10-11 19:20:17,928 | INFO     | .. there are 66 such processes running
[2025-10-11 15:20:18] 2025-10-11 19:20:17,929 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 15:20:18] 2025-10-11 19:20:17,929 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 15:20:18] 2025-10-11 19:20:17,929 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 15:20:18] 2025-10-11 19:20:17,929 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 15:20:18] 2025-10-11 19:20:17,929 | INFO     | [monitor] control thread has ended
[2025-10-11 15:20:18] 2025-10-11 19:20:18,180 [wrapper] ==== pilot stdout END ====
[2025-10-11 15:20:18] 2025-10-11 19:20:18,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 15:20:18] 2025-10-11 19:20:18,247 [wrapper] pilotpid: 1796033
[2025-10-11 15:20:18] 2025-10-11 19:20:18,266 [wrapper] Pilot exit status: 0
[2025-10-11 15:20:18] 2025-10-11 19:20:18,305 [wrapper] pandaids: 6838118501
[2025-10-11 15:20:18] 2025-10-11 19:20:18,499 [wrapper] cleanup supervisor_pilot 2414412 1796034
[2025-10-11 15:20:18] 2025-10-11 19:20:18,510 [wrapper] Test setup, not cleaning
[2025-10-11 15:20:18] 2025-10-11 19:20:18,515 [wrapper] apfmon messages muted
[2025-10-11 15:20:18] 2025-10-11 19:20:18,526 [wrapper] ==== wrapper stdout END ====
[2025-10-11 15:20:18] 2025-10-11 19:20:18,529 [wrapper] ==== wrapper stderr END ====
[2025-10-11 15:20:18]  *** Error codes and diagnostics ***
[2025-10-11 15:20:18]     "exeErrorCode": 0,
[2025-10-11 15:20:18]     "exeErrorDiag": "",
[2025-10-11 15:20:18]     "pilotErrorCode": 0,
[2025-10-11 15:20:18]     "pilotErrorDiag": "",
[2025-10-11 15:20:18]  *** Listing of results directory ***
[2025-10-11 15:20:18] total 407132
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 02:01 pilot3.tar.gz
[2025-10-11 15:20:18] -rwx------. 1 boincer umatlas     36292 Oct 11 02:11 runpilot2-wrapper.sh
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 02:11 queuedata.json
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas       100 Oct 11 14:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 15:20:18] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 14:24 run_atlas
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas       105 Oct 11 14:24 job.xml
[2025-10-11 15:20:18] -rw-r--r--. 2 boincer umatlas 219165520 Oct 11 14:24 EVNT.46676267._002105.pool.root.1
[2025-10-11 15:20:18] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 14:24 start_atlas.sh
[2025-10-11 15:20:18] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 14:24 shared
[2025-10-11 15:20:18] -rw-r--r--. 2 boincer umatlas    569673 Oct 11 14:24 input.tar.gz
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas         0 Oct 11 14:24 boinc_lockfile
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 14:24 pandaJob.out
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas    975520 Oct 11 14:24 agis_schedconf.cvmfs.json
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas   1560580 Oct 11 14:24 agis_ddmendpoints.agis.ALL.json
[2025-10-11 15:20:18] drwx------. 5 boincer umatlas      4096 Oct 11 14:24 pilot3
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas      7161 Oct 11 15:12 init_data.xml
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas 192260935 Oct 11 15:18 HITS.46676269._052388.pool.root.1
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas       529 Oct 11 15:18 boinc_task_state.xml
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas      1034 Oct 11 15:19 memory_monitor_summary.json
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas    331104 Oct 11 15:19 log.46676269._052388.job.log.tgz.1
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas      7779 Oct 11 15:19 heartbeat.json
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 15:20 boinc_mmap_file
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas        27 Oct 11 15:20 wrapper_checkpoint.txt
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas       823 Oct 11 15:20 pilotlog.txt
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas        95 Oct 11 15:20 pilot_heartbeat.json
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas    456009 Oct 11 15:20 log.46676269._052388.job.log.1
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas       357 Oct 11 15:20 output.list
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas       620 Oct 11 15:20 runtime_log
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas    808960 Oct 11 15:20 result.tar.gz
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas      8698 Oct 11 15:20 runtime_log.err
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas       651 Oct 11 15:20 0n2NDmq0hR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlZfNDmBxeoDo.diag
[2025-10-11 15:20:18] -rw-r--r--. 1 boincer umatlas     22250 Oct 11 15:20 stderr.txt
[2025-10-11 15:20:18] HITS file was successfully produced:
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas 192260935 Oct 11 15:18 shared/HITS.pool.root.1
[2025-10-11 15:20:18]  *** Contents of shared directory: ***
[2025-10-11 15:20:18] total 403160
[2025-10-11 15:20:18] -rw-r--r--. 2 boincer umatlas 219165520 Oct 11 14:24 ATLAS.root_0
[2025-10-11 15:20:18] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 14:24 start_atlas.sh
[2025-10-11 15:20:18] -rw-r--r--. 2 boincer umatlas    569673 Oct 11 14:24 input.tar.gz
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas 192260935 Oct 11 15:18 HITS.pool.root.1
[2025-10-11 15:20:18] -rw-------. 1 boincer umatlas    808960 Oct 11 15:20 result.tar.gz
15:20:20 (1788873): run_atlas exited; CPU time 21649.966924
15:20:20 (1788873): called boinc_finish(0)

</stderr_txt>
]]>

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